8676 FreshPorts -- biology/primer3
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Port details
primer3 1.1.4 biology on this many watch lists=0 search for ports that depend on this port
Primer3 helps to choose primers for PCR reactions
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 17 Sep 2002 15:31:31
License: not specified in port


"Primer3 is a complete rewrite of the original PRIMER program
(Primer 0.5), written by Steve Lincoln, Mark Daly, and Eric
Lander.  See DIFFERENCES FROM EARLIER VERSIONS for a discussion
of how Primer3 differs from its predecessors, Primer 0.5 and
Primer v2.

Primer3 picks primers for PCR reactions, considering as criteria:

o oligonucleotide melting temperature, size, GC content,
  and primer-dimer possibilities,
o PCR product size,
o positional constraints within the source sequence, and
o miscellaneous other constraints.

All of these criteria are user-specifiable as constraints, and
some are specifiable as terms in an objective function that
characterizes an optimal primer pair."
- from the README file

WWW: http://www-genome.wi.mit.edu/genome_software/other/primer3.html
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:
  1. devel/gmake

This port is required by:

for Build

To install the port: cd /usr/ports/biology/primer3/ && make install clean
To add the package: pkg_add -r primer3


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://freefr.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  3. http://heanet.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  4. http://internode.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  5. http://iweb.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  6. http://jaist.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  7. http://kent.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  8. http://nchc.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  9. http://ncu.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  10. http://osdn.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  11. http://sunet.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  12. http://surfnet.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  13. http://switch.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  14. http://ufpr.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  15. http://voxel.dl.sourceforge.net/project/primer3/primer3/1.1.4/
  16. http://waix.dl.sourceforge.net/project/primer3/primer3/1.1.4/

Number of commits found: 21

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
01 Oct 2012 14:55:55
Original commit files touched by this commit  1.1.4
wen search for other commits by this committer
- Take maintainership
01 Oct 2012 14:45:17
Original commit files touched by this commit  1.1.4
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
27 Jan 2012 17:41:00
Original commit files touched by this commit  1.1.4
miwi search for other commits by this committer
- Respect CC

PR:             163172
Submitted by:   Jan Beich <jbeich@tormail.net>
Approved by:    maintainer timeout
22 Oct 2011 23:50:23
Original commit files touched by this commit  1.1.4
eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.1.4
miwi search for other commits by this committer
- Get Rid MD5 support
29 Dec 2010 20:04:42
Original commit files touched by this commit  1.1.4
pgollucci search for other commits by this committer
- DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.

PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)
18 Dec 2009 02:55:57
Original commit files touched by this commit  1.1.4
wen search for other commits by this committer
- Update to 1.1.4

Submitted by:   Wen Heping (myself)
Approved by:    maintainer (via Email)
04 Apr 2008 20:46:36
Original commit files touched by this commit  1.1.3
pav search for other commits by this committer
- Update to 1.1.3

PR:             ports/122374
Submitted by:   Wen heping <wenheping@gmail.com>
Patch revised:  Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
29 Dec 2006 23:40:53
Original commit files touched by this commit  1.0.1
miwi search for other commits by this committer
- Update to 1.0.1
- Update MASTER_SITES
- Pass maintainership to submitter

PR:             ports/107246
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
26 Dec 2006 12:46:34
Original commit files touched by this commit  1.0.0
linimon search for other commits by this committer
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.

Hat:            portmgr
03 May 2006 23:26:35
Original commit files touched by this commit  1.0.0
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.0.0
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
09 Jan 2006 03:25:03
Original commit files touched by this commit  1.0.0
edwin search for other commits by this committer
Fix maintainer address

    From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:   Tony Maher <anthony.maher@uts.edu.au>
13 Jun 2005 04:31:34
Original commit files touched by this commit  1.0.0
pat search for other commits by this committer
- Update to 1.0.0
- Make DATADIR/EXAMPLESDIR/DOCSDIR safe
- Don't hardcode ${CPIO}

PR:             ports/82154
Submitted by:   George Hartzell <hartzell@alerce.com>
Approved by:    maintainer
31 Mar 2004 03:12:58
Original commit files touched by this commit  0.9
trevor search for other commits by this committer
SIZEify (maintainer timeout)
27 Feb 2004 22:20:43
Original commit files touched by this commit  0.9
krion search for other commits by this committer
- Fix MASTER_SITES

PR:             ports/63469
Submitted by:   maintainer
20 Dec 2003 12:20:49
Original commit files touched by this commit  0.9
krion search for other commits by this committer
- Fix MASTER_SITES

PR:             60417
Submitted by:   maintainer
22 Oct 2003 09:29:55
Original commit files touched by this commit  0.9
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
21 Feb 2003 11:01:38
Original commit files touched by this commit  0.9
knu search for other commits by this committer
De-pkg-comment.
07 Nov 2002 13:45:17
Original commit files touched by this commit  0.9
edwin search for other commits by this committer
Updated to fix problems as stated in PR ports/42915

PR:             ports/42915
Submitted by:   Tony Maher <tonym@biolateral.com.au>
17 Sep 2002 15:31:10
Original commit files touched by this commit  0.9
ijliao search for other commits by this committer
add primer3 0.9
Primer3 helps to choose primers for PCR reactions

PR:             35298
Submitted by:   Tony Maher <tonym@biolateral.com.au>

Number of commits found: 21

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