FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

Please give me your LTO-4 or better tape library and I'll put it to good use.
Port details
primer3 Primer3 helps to choose primers for PCR reactions
2.3.6 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 17 Sep 2002 15:31:31
License: GPLv2
"Primer3 is a complete rewrite of the original PRIMER program
(Primer 0.5), written by Steve Lincoln, Mark Daly, and Eric
Lander.  See DIFFERENCES FROM EARLIER VERSIONS for a discussion
of how Primer3 differs from its predecessors, Primer 0.5 and
Primer v2.

Primer3 picks primers for PCR reactions, considering as criteria:

o oligonucleotide melting temperature, size, GC content,
  and primer-dimer possibilities,
o PCR product size,
o positional constraints within the source sequence, and
o miscellaneous other constraints.

All of these criteria are user-specifiable as constraints, and
some are specifiable as terms in an objective function that
characterizes an optimal primer pair."
- from the README file

WWW: http://www-genome.wi.mit.edu/genome_software/other/primer3.html
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake

This port is required by:

for Build * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

To install the port: cd /usr/ports/biology/primer3/ && make install clean
To add the package: pkg install biology/primer3


Configuration Options
     No options to configure

USES:
gmake

Master Sites:
  1. http://aarnet.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  2. http://distcache.FreeBSD.org/ports-distfiles/
  3. http://downloads.sourceforge.net/project/primer3/primer3/2.3.6/
  4. http://freefr.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  5. http://garr.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  6. http://heanet.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  7. http://hivelocity.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  8. http://ignum.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  9. http://internode.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  10. http://iweb.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  11. http://jaist.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  12. http://kaz.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  13. http://kent.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  14. http://master.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  15. http://nchc.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  16. http://ncu.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  17. http://netcologne.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  18. http://sunet.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  19. http://superb-dca3.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  20. http://switch.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  21. http://tenet.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  22. http://ufpr.dl.sourceforge.net/project/primer3/primer3/2.3.6/
  23. http://waix.dl.sourceforge.net/project/primer3/primer3/2.3.6/

Number of commits found: 27

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
20 May 2014 19:32:39
Original commit files touched by this commit  2.3.6
Revision:354670
tijl search for other commits by this committer
Quote ${CC} and similar variables in MAKE_ARGS.

Reported by:	Dominic Fandrey <kamikaze@bsdforen.de>
06 Apr 2014 03:56:03
Original commit files touched by this commit  2.3.6
Revision:350288
wen search for other commits by this committer
- Update to 2.3.6
- Reset maintainer to ports@
14 Mar 2014 12:35:03
Original commit files touched by this commit  2.3.5
Revision:348218
ehaupt search for other commits by this committer
Support staging
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.3.5
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
28 Aug 2013 06:04:51
Original commit files touched by this commit  2.3.5
Revision:325508
bapt search for other commits by this committer
Make sure to respect CC and CXX, this fixes the build on head without gcc
20 Aug 2013 14:11:56
Original commit files touched by this commit  2.3.5
Revision:325050
wen search for other commits by this committer
- Update to 2.3.5
- Add LICENSE
- Remove pkg-message since license changed upstream
- Do not install test files as example
01 Oct 2012 14:55:55
Original commit files touched by this commit  1.1.4
Revision:305131
wen search for other commits by this committer
- Take maintainership
01 Oct 2012 14:45:17
Original commit files touched by this commit  1.1.4
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
27 Jan 2012 17:41:00
Original commit files touched by this commit  1.1.4
miwi search for other commits by this committer
- Respect CC

PR:             163172
Submitted by:   Jan Beich <jbeich@tormail.net>
Approved by:    maintainer timeout
22 Oct 2011 23:50:23
Original commit files touched by this commit  1.1.4
eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.1.4
miwi search for other commits by this committer
- Get Rid MD5 support
29 Dec 2010 20:04:42
Original commit files touched by this commit  1.1.4
pgollucci search for other commits by this committer
- DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.

PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)
18 Dec 2009 02:55:57
Original commit files touched by this commit  1.1.4
wen search for other commits by this committer
- Update to 1.1.4

Submitted by:   Wen Heping (myself)
Approved by:    maintainer (via Email)
04 Apr 2008 20:46:36
Original commit files touched by this commit  1.1.3
pav search for other commits by this committer
- Update to 1.1.3

PR:             ports/122374
Submitted by:   Wen heping <wenheping@gmail.com>
Patch revised:  Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
29 Dec 2006 23:40:53
Original commit files touched by this commit  1.0.1
miwi search for other commits by this committer
- Update to 1.0.1
- Update MASTER_SITES
- Pass maintainership to submitter

PR:             ports/107246
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
26 Dec 2006 12:46:34
Original commit files touched by this commit  1.0.0
linimon search for other commits by this committer
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.

Hat:            portmgr
03 May 2006 23:26:35
Original commit files touched by this commit  1.0.0
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.0.0
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
09 Jan 2006 03:25:03
Original commit files touched by this commit  1.0.0
edwin search for other commits by this committer
Fix maintainer address

    From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:   Tony Maher <anthony.maher@uts.edu.au>
13 Jun 2005 04:31:34
Original commit files touched by this commit  1.0.0
pat search for other commits by this committer
- Update to 1.0.0
- Make DATADIR/EXAMPLESDIR/DOCSDIR safe
- Don't hardcode ${CPIO}

PR:             ports/82154
Submitted by:   George Hartzell <hartzell@alerce.com>
Approved by:    maintainer
31 Mar 2004 03:12:58
Original commit files touched by this commit  0.9
trevor search for other commits by this committer
SIZEify (maintainer timeout)
27 Feb 2004 22:20:43
Original commit files touched by this commit  0.9
krion search for other commits by this committer
- Fix MASTER_SITES

PR:             ports/63469
Submitted by:   maintainer
20 Dec 2003 12:20:49
Original commit files touched by this commit  0.9
krion search for other commits by this committer
- Fix MASTER_SITES

PR:             60417
Submitted by:   maintainer
22 Oct 2003 09:29:55
Original commit files touched by this commit  0.9
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
21 Feb 2003 11:01:38
Original commit files touched by this commit  0.9
knu search for other commits by this committer
De-pkg-comment.
07 Nov 2002 13:45:17
Original commit files touched by this commit  0.9
edwin search for other commits by this committer
Updated to fix problems as stated in PR ports/42915

PR:             ports/42915
Submitted by:   Tony Maher <tonym@biolateral.com.au>
17 Sep 2002 15:31:10
Original commit files touched by this commit  0.9
ijliao search for other commits by this committer
add primer3 0.9
Primer3 helps to choose primers for PCR reactions

PR:             35298
Submitted by:   Tony Maher <tonym@biolateral.com.au>

Number of commits found: 27

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
chromiumApr 27
php5Apr 25
php55Apr 25
php56Apr 25
wpa_supplicantApr 25
wordpress*Apr 24
wordpress*Apr 24
wordpress*Apr 24
wordpress*Apr 24
wordpress-zh_CN*Apr 24
wordpress-zh_TW*Apr 24
libtasn1Apr 22
firefoxApr 21
linux-firefoxApr 21
chronyApr 18

12 vulnerabilities affecting 36 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24694
Broken 252
Deprecated 49
Ignore 522
Forbidden 1
Restricted 204
No CDROM 95
Vulnerable 20
Expired 0
Set to expire 42
Interactive 0
new 24 hours 2
new 48 hours3
new 7 days15
new fortnight29
new month105

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.