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non port: head/biology/py-biopython/Makefile
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Number of commits found: 39

Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit 
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile

(Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Tue, 25 Feb 2014
[ 12:44 tota ] Original commit 
345987 biology/py-biopython/Makefile
345987 deskutils/gourmet/Makefile
345987 deskutils/griffith/Makefile
345987 games/pythonsudoku/Makefile
345987 misc/pdfmap/Makefile
345987 print/Makefile
345987 print/py-reportlab/Makefile
345987 print/py-reportlab/distinfo
345987 print/py-reportlab/files/patch-docs-genAll.py
345987 print/py-reportlab/files/patch-docs-userguide-genuserguide.py

(Only the first 10 of 22 ports in this commit are shown above. View all ports for this commit)
- Repocopy print/py-reportlab to print/py-reportlab1
  to preserve version 1.x and to update to 3.0

  print/py-reportlab:
    - Update print/py-reportlab to 3.0 based on print/py-reportlab2
    - Support STAGEDIR
    - Use PYDISTUTILS_AUTOPLIST
      * Remove pkg-plist, accordingly
    - Set CONFLICTS
    - Add PORTSCOUT
    - Replace tab with a single space after WWW: in pkg-descr

  print/py-reportlab1:
    - Support STAGEDIR
    - Add PKGNAMESUFFIX not to duplicate ports with the same name
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Mon, 13 Jan 2014
[ 21:00 rene ] Original commit 
339634 accessibility/accerciser/Makefile
339634 accessibility/at-spi/Makefile
339634 accessibility/orca/Makefile
339634 accessibility/py-atspi/Makefile
339634 accessibility/py-papi/Makefile
339634 archivers/rpm4/Makefile
339634 astro/astrometry/Makefile
339634 astro/py-metar/Makefile
339634 astro/pyephem/Makefile
339634 audio/alsa-lib/Makefile

(Only the first 10 of 702 ports in this commit are shown above. View all ports for this commit)
Python cleanup:
- USE_PYTHON* = 2.X -> USE_PYTHON* = 2
- USE_PYTHON* = 2.X+ -> USE_PYTHON* = yes
Reviewed by:	python (mva, rm)
Approved by:	portmgr-lurkers (mat)
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit 
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile

(Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Tue, 25 Sep 2012
[ 08:06 rm ] Original commit 
304822 biology/py-biopython/Makefile
304822 biology/py-biopython/distinfo
304822 biology/py-biopython/pkg-descr
304822 biology/py-biopython/pkg-plist
- update to 1.60

while here:
- convert Makefile header into two-line format
- update COMMENT (indefinite article removed)
- change USE_PYTHON to just -2.7
- remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there
- tab -> space change in pkg-descr:WWW

PR:		171115
Submitted by:	wen
Approved by:	Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
Tue, 6 Mar 2012
[ 06:40 wen ] Original commit 
1.33 biology/py-biopython/Makefile
1.23 biology/py-biopython/distinfo
1.21 biology/py-biopython/pkg-plist
- Update to 1.59

PR:             ports/165582
Submitted by:   wen@ (myself)
Approved by:    Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via
email)
Tue, 24 May 2011
[ 09:06 wen ] Original commit 
1.32 biology/py-biopython/Makefile
1.22 biology/py-biopython/distinfo
1.20 biology/py-biopython/pkg-plist
- Update to 1.57

PR:             ports/156329
Submitted by:   Wen Heping (myself)
Approved by:    maintainer
Thu, 24 Feb 2011
[ 23:25 miwi ] Original commit 
1.9 accessibility/speech-dispatcher/Makefile
1.10 astro/astrometry/Makefile
1.3 astro/astrometry/distinfo
1.8 astro/pyephem/Makefile
1.14 audio/coverhunter/Makefile
1.3 audio/coverhunter/distinfo
1.3 audio/decibel-audio-player/Makefile
1.8 audio/mma/Makefile
1.7 audio/mma/distinfo
1.48 audio/streamtuner/Makefile

(Only the first 10 of 20 ports in this commit are shown above. View all ports for this commit)
- Move over to python2.5 or higher
- While here kick md5
Fri, 2 Jul 2010
[ 02:57 wen ] Original commit 
1.30 biology/py-biopython/Makefile
1.20 biology/py-biopython/distinfo
1.19 biology/py-biopython/pkg-plist
- Update to 1.54

PR:             ports/148274
Submitted by:   Ju Pengfei <jupengfei@gmail.com>
Approved by:    maintainer
Feature safe:   yes
Wed, 6 Jan 2010
[ 00:29 wen ] Original commit 
1.29 biology/py-biopython/Makefile
1.19 biology/py-biopython/distinfo
1.18 biology/py-biopython/pkg-plist
- Update to 1.53

PR:             ports/142221
Submitted by:   Wen Heping (myself)
Approved by:    maintainer
Fri, 4 Sep 2009
[ 20:41 miwi ] Original commit 
1.28 biology/py-biopython/Makefile
1.18 biology/py-biopython/distinfo
1.6 biology/py-biopython/files/patch-setup.py
1.17 biology/py-biopython/pkg-plist
- Update to 138038

PR:             138038
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Sat, 11 Oct 2008
[ 15:26 miwi ] Original commit 
1.27 biology/py-biopython/Makefile
1.17 biology/py-biopython/distinfo
1.16 biology/py-biopython/pkg-plist
- Update to 1.48

PR:             127776
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    maintainer
Mon, 11 Aug 2008
[ 22:06 miwi ] Original commit 
1.26 biology/py-biopython/Makefile
1.16 biology/py-biopython/distinfo
1.15 biology/py-biopython/pkg-plist
- Update to 1.47

PR:             125912
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    maintainer timeout
Fri, 4 Jul 2008
[ 02:53 beech ] Original commit 
1.25 biology/py-biopython/Makefile
1.15 biology/py-biopython/distinfo
1.14 biology/py-biopython/pkg-plist
- Update to 1.45

PR:             ports/125134
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer)
Thu, 31 May 2007
[ 03:49 miwi ] Original commit 
1.24 biology/py-biopython/Makefile
- Fix typos.

Reported by:    stas@
Wed, 30 May 2007
[ 06:57 miwi ] Original commit 
1.23 biology/py-biopython/Makefile
1.14 biology/py-biopython/distinfo
1.5 biology/py-biopython/files/patch-setup.py
1.13 biology/py-biopython/pkg-plist
- Update to 1.43

PR:             111817
Submitted by:   "P.BandieraPaiva" <paiva@unifesp.br>
Approved by:    maintainer
Tue, 31 Oct 2006
[ 13:25 miwi ] Original commit 
1.22 biology/py-biopython/Makefile
1.13 biology/py-biopython/distinfo
1.12 biology/py-biopython/pkg-plist
- Update to 1.42

PR:             ports/104635
Submitted by:   Thomas Abthorpe <thomas@goodking.ca>
Approved by:    maintainer
Fri, 11 Nov 2005
[ 01:15 mnag ] Original commit 
1.21 biology/py-biopython/Makefile
1.12 biology/py-biopython/distinfo
1.2 biology/py-biopython/files/patch-Bio::triemodule.c
1.4 biology/py-biopython/files/patch-setup.py
1.11 biology/py-biopython/pkg-plist
Update to 1.41
Take MAINTAINER
Add SHA256

PR:             88792
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Sat, 20 Nov 2004
[ 08:09 linimon ] Original commit 
1.3 biology/coalesce/Makefile
1.6 biology/fasta/Makefile
1.3 biology/fluctuate/Makefile
1.13 biology/hmmer/Makefile
1.3 biology/lamarc/Makefile
1.20 biology/py-biopython/Makefile
1.3 biology/recombine/Makefile
1.5 biology/t_coffee/Makefile
1.9 databases/zodb/Makefile
1.7 devel/arch/Makefile

(Only the first 10 of 33 ports in this commit are shown above. View all ports for this commit)
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
Wed, 27 Oct 2004
[ 20:39 pav ] Original commit 
1.19 biology/py-biopython/Makefile
1.11 biology/py-biopython/distinfo
1.10 biology/py-biopython/pkg-plist
- Update to 1.30

PR:             ports/71400
Submitted by:   Stefan Walter <sw@gegenunendlich.de>
Approved by:    maintainer timeout (2 months)
Fri, 2 Jul 2004
[ 08:20 kris ] Original commit 
1.18 biology/py-biopython/Makefile
BROKEN: Does not build
Mon, 9 Feb 2004
[ 21:40 des ] Original commit 
1.17 biology/py-biopython/Makefile
1.9 biology/py-biopython/distinfo
1.2 biology/py-biopython/files/corba.msg
1.2 biology/py-biopython/files/patch-setup.py
1.9 biology/py-biopython/pkg-plist
1.3 biology/py-biopython/pkg-req
Upgrade to 1.23.

Approved by:    maintainer timeout
Thu, 20 Nov 2003
[ 15:06 trevor ] Original commit 
1.37 biology/emboss/Makefile
1.16 biology/py-biopython/Makefile
1.22 french/staroffice52/Makefile
1.17 games/3dc/Makefile
1.14 games/alephone/Makefile
1.4 games/atr3d/Makefile
1.12 games/awele/Makefile
1.10 games/bomberinstinct/Makefile
1.23 games/doom/Makefile
1.8 games/falconseye/Makefile

(Only the first 10 of 111 ports in this commit are shown above. View all ports for this commit)
Define USE_PERL5_BUILD, not erroneous USE_PERL.

Submitted by:   Oliver Eikemeier
[ 13:51 trevor ] Original commit 
1.36 biology/emboss/Makefile
1.15 biology/py-biopython/Makefile
1.21 french/staroffice52/Makefile
1.16 games/3dc/Makefile
1.13 games/alephone/Makefile
1.3 games/atr3d/Makefile
1.11 games/awele/Makefile
1.9 games/bomberinstinct/Makefile
1.22 games/doom/Makefile
1.7 games/falconseye/Makefile

(Only the first 10 of 111 ports in this commit are shown above. View all ports for this commit)
Define USE_PERL to make Perl available for (mostly deprecated)
"perl -pi -e" construction.
Thu, 13 Nov 2003
[ 14:45 trevor ] Original commit 
1.16 biology/ncbi-toolkit/Makefile
1.14 biology/py-biopython/Makefile
1.3 biology/t_coffee/Makefile
1.12 cad/linux-eagle/Makefile
1.9 chinese/chinput/Makefile
1.9 chinese/chinput2/Makefile
1.6 comms/ghfaxviewer/Makefile
1.3 comms/tkscanfax/Makefile
1.6 comms/vpb2/Makefile
1.24 databases/libgda/Makefile

(Only the first 10 of 81 ports in this commit are shown above. View all ports for this commit)
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
Fri, 7 Mar 2003
[ 05:56 ade ] Original commit 
1.2 biology/coalesce/Makefile
1.2 biology/coalesce/pkg-comment
1.31 biology/emboss/Makefile
1.2 biology/emboss/pkg-comment
1.4 biology/fasta/Makefile
1.2 biology/fasta/pkg-comment
1.8 biology/fasta3/Makefile
1.3 biology/fasta3/pkg-comment
1.2 biology/fluctuate/Makefile
1.2 biology/fluctuate/pkg-comment

(Only the first 10 of 28 ports in this commit are shown above. View all ports for this commit)
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Mon, 15 Jul 2002
[ 11:37 tg ] Original commit 
1.12 biology/py-biopython/Makefile
1.18 devel/py-game/Makefile
1.16 graphics/py-opengl/Makefile
1.5 math/biggles/Makefile
1.8 math/py-gnuplot/Makefile
1.13 math/py-scientific/Makefile
1.20 math/scigraphica/Makefile
1.4 print/py-fonttools/Makefile
1.51 x11-toolkits/py-gtk/Makefile
Use $PYNUMERIC in the dependencies.
Tue, 22 Jan 2002
[ 10:54 wjv ]  
unknown biology/py-biopython/Makefile
unknown biology/py-biopython/distinfo
unknown biology/py-biopython/pkg-plist
- Update to version 1.00a4    
Tue, 2 Oct 2001
[ 09:31 wjv ]  
unknown biology/py-biopython/Makefile
unknown biology/py-biopython/distinfo
unknown biology/py-biopython/files/extra-patch-build_helper.py
unknown biology/py-biopython/pkg-descr
unknown biology/py-biopython/pkg-plist
- Update the included (optional) Biopython-CORBA pacakge to version 0.3.0   - If
CORBA support is included, the default ORB has changed from omniORB to     ORBit
  - PORTREVISION bump    
Thu, 6 Sep 2001
[ 13:42 wjv ]  
unknown biology/py-biopython/Makefile
unknown biology/py-biopython/distinfo
unknown biology/py-biopython/pkg-plist
unknown biology/py-biopython/pkg-req
- Update to version 1.00.a3   - Use pkg-req to check the installed version of
Python    
Mon, 9 Jul 2001
[ 10:57 wjv ]  
unknown biology/py-biopython/Makefile
unknown biology/py-biopython/distinfo
unknown biology/py-biopython/files/extra-patch-build_helper.py
unknown biology/py-biopython/files/patch-setup.py
unknown biology/py-biopython/pkg-descr
unknown biology/py-biopython/pkg-plist
Update to version 1.00.a2    
Fri, 29 Jun 2001
[ 16:04 wjv ]  
unknown biology/py-biopython/Makefile
Use $FILESDIR rather than hard-coded path.    
Fri, 15 Jun 2001
[ 14:25 wjv ]  
unknown biology/py-biopython/Makefile
unknown biology/py-biopython/distinfo
unknown biology/py-biopython/files/corba.msg
unknown biology/py-biopython/files/extra-patch-build_helper.py
unknown biology/py-biopython/pkg-descr
unknown biology/py-biopython/pkg-plist
Update to 1.00.a1; change MAINTAINER to my new address.   Many changes to port,
including addition of CORBA functionality.    
Tue, 29 May 2001
[ 13:50 sobomax ]  
unknown biology/py-biopython/Makefile
unknown math/py-gnuplot/Makefile
math/numpy was renamed to math/py-numeric.    
Mon, 11 Sep 2000
[ 15:56 nbm ]  
unknown biology/py-biopython/Makefile
unknown biology/py-biopython/files/md5
unknown biology/py-biopython/pkg/PLIST
Update to 0.90.d03    
Fri, 8 Sep 2000
[ 13:24 tg ]  
unknown audio/pysol-sound-server/Makefile
unknown biology/py-biopython/Makefile
unknown databases/gadfly/Makefile
unknown databases/metakit/Makefile
unknown databases/py-MySQL/Makefile
unknown databases/py-MySQLdb/Makefile
unknown databases/py-PyGreSQL/Makefile
unknown devel/newt/Makefile
unknown devel/py-coro/Makefile
unknown devel/py-htmlkit/Makefile

(Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
Don't break package building on Satoshi's cluster. Explicitly depend   on
python1.5:lang/python15.    
Sat, 5 Aug 2000
[ 17:01 will ]  
unknown biology/py-biopython/Makefile
unknown biology/py-biopython/files/md5
Upgrade to 0.90.d02.    
Mon, 31 Jul 2000
[ 13:12 nbm ]  
unknown biology/py-biopython/Makefile
unknown biology/py-biopython/files/md5
unknown biology/py-biopython/pkg/COMMENT
unknown biology/py-biopython/pkg/DESCR
unknown biology/py-biopython/pkg/PLIST
Add py-biopython, is a collection of Python packages and modules created   by
the Biopython Project, intended to provide the basis for building  
bioinformatics applications in the Python language.    

Number of commits found: 39

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