FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

non port: head/biology/pycogent/Makefile
SVNWeb

Number of commits found: 16

Fri, 1 Apr 2016
[ 13:29 mat ] Original commit 
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile

(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Sun, 19 Oct 2014
[ 07:38 mva ] Original commit 
371171 benchmarks/pybench/Makefile
371171 benchmarks/tsung/Makefile
371171 biology/py-biopython/Makefile
371171 biology/pycogent/Makefile
371171 biology/pyfasta/Makefile
371171 biology/python-nexus/Makefile
371171 biology/seqan/Makefile
371171 biology/velvet/Makefile
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
Wed, 10 Sep 2014
[ 20:50 gerald ] Original commit 
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile

(Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Fri, 2 May 2014
[ 14:00 wen ] Original commit 
352814 biology/pycogent/Makefile
352814 biology/pycogent/pkg-descr
352814 biology/pycogent/pkg-plist
- Stage support [1]
- Pet portlint [1]
- Add LICENSE
- Convert to PYDISTUTILS_AUTOPLIST

PR:		188819 [1]
Submitted by:	Bartek Rutkowski <ports@robakdesign.com> [1]
Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit 
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile

(Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit 
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile

(Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Mon, 8 Oct 2012
[ 03:17 wen ] Original commit 
305516 biology/pycogent/Makefile
305516 biology/pycogent/distinfo
305516 biology/pycogent/pkg-plist
- Update to 1.5.3
- Trim Makefile headers
Sun, 10 Jun 2012
[ 18:42 swills ] Original commit 
1.8 arabic/arabtex/Makefile
1.5 archivers/p5-Archive-SimpleExtractor/Makefile
1.20 archivers/p5-POE-Filter-Zlib/Makefile
1.7 archivers/p5-PerlIO-via-Bzip2/Makefile
1.12 audio/gigedit/Makefile
1.8 audio/p5-Filesys-Virtual-DAAP/Makefile
1.9 audio/p5-Net-DAAP-Client/Makefile
1.6 benchmarks/p5-Benchmark-Stopwatch/Makefile
1.28 biology/p5-AcePerl/Makefile
1.28 biology/p5-Bio-Das/Makefile

(Only the first 10 of 639 ports in this commit are shown above. View all ports for this commit)
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
  RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:             ports/168208
Approved by:    portmgr (miwi)
Thu, 11 Aug 2011
[ 11:37 wen ] Original commit 
1.7 biology/pycogent/Makefile
1.5 biology/pycogent/distinfo
1.5 biology/pycogent/pkg-plist
- Update to 1.5.1
Sat, 25 Jun 2011
[ 07:21 nivit ] Original commit 
1.6 biology/pycogent/Makefile
1.12 databases/py-Elixir/Makefile
1.10 games/anki/Makefile.inc
1.11 games/py-anki/Makefile
- Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy
  (This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
Wed, 10 Nov 2010
[ 08:52 wen ] Original commit 
1.5 biology/pycogent/Makefile
1.4 biology/pycogent/distinfo
1.4 biology/pycogent/pkg-plist
- Update to 1.5.0
Tue, 1 Jun 2010
[ 06:57 wen ] Original commit 
1.4 biology/pycogent/Makefile
1.3 biology/pycogent/distinfo
1.3 biology/pycogent/pkg-plist
- Update to 1.4.1
Thu, 17 Dec 2009
[ 06:51 wen ] Original commit 
1.3 biology/pycogent/Makefile
1.2 biology/pycogent/distinfo
1.2 biology/pycogent/pkg-plist
- Update to 1.4
- Update my mail address to FreeBSD
Sat, 22 Aug 2009
[ 00:15 amdmi3 ] Original commit 
1.22 benchmarks/iperf/Makefile
1.24 benchmarks/lmbench/Makefile
1.14 benchmarks/sysbench/Makefile
1.26 biology/avida/Makefile
1.2 biology/libsbml/Makefile
1.23 biology/mopac/Makefile
1.10 biology/protomol/Makefile
1.2 biology/pycogent/Makefile
1.9 cad/adms/Makefile
1.7 cad/atlc/Makefile

(Only the first 10 of 78 ports in this commit are shown above. View all ports for this commit)
- Switch SourceForge ports to the new File Release System: categories starting
with B,C
Mon, 22 Jun 2009
[ 12:46 miwi ] Original commit 
1.109 biology/Makefile
1.1 biology/pycogent/Makefile
1.1 biology/pycogent/distinfo
1.1 biology/pycogent/pkg-descr
1.1 biology/pycogent/pkg-plist
PyCogent is a software library for genomic biology. It is a fully integrated
and thoroughly tested framework for: controlling third-party applications;
devising workflows; querying databases; conducting novel probabilistic
analyses of biological sequence evolution; and generating publication quality
graphics. It is distinguished by many unique built-in capabilities (such as
true codon alignment) and the frequent addition of entirely new methods for
the analysis of genomic data.

WWW:    http://pycogent.sourceforge.net/

PR:             ports/135863
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 16

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
chromiumJul 22
krb5-114Jul 21
mariadb100-server*Jul 21
mariadb101-server*Jul 21
mariadb55-server*Jul 21
mysql55-server*Jul 21
mysql56-server*Jul 21
mysql57-server*Jul 21
openoffice-4Jul 21
openoffice-develJul 21
percona55-server*Jul 21
typo3Jul 18
typo3-ltsJul 18
atutorJul 16
atutorJul 16

18 vulnerabilities affecting 35 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 26061
Broken 80
Deprecated 122
Ignore 351
Forbidden 0
Restricted 201
No CDROM 83
Vulnerable 74
Expired 10
Set to expire 109
Interactive 0
new 24 hours 3
new 48 hours7
new 7 days22
new fortnight88
new month162

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.