FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

Please give me your LTO-4 or better tape library and I'll put it to good use.
found something from the cache
non port: head/biology/pycogent/Makefile
SVNWeb

Number of commits found: 15

Sun, 19 Oct 2014
[ 07:38 mva ] Original commit 
371171 benchmarks/pybench/Makefile
371171 benchmarks/tsung/Makefile
371171 biology/py-biopython/Makefile
371171 biology/pycogent/Makefile
371171 biology/pyfasta/Makefile
371171 biology/python-nexus/Makefile
371171 biology/seqan/Makefile
371171 biology/velvet/Makefile
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
Wed, 10 Sep 2014
[ 20:50 gerald ] Original commit 
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile

(Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Fri, 2 May 2014
[ 14:00 wen ] Original commit 
352814 biology/pycogent/Makefile
352814 biology/pycogent/pkg-descr
352814 biology/pycogent/pkg-plist
- Stage support [1]
- Pet portlint [1]
- Add LICENSE
- Convert to PYDISTUTILS_AUTOPLIST

PR:		188819 [1]
Submitted by:	Bartek Rutkowski <ports@robakdesign.com> [1]
Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit 
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile

(Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit 
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile

(Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Mon, 8 Oct 2012
[ 03:17 wen ] Original commit 
305516 biology/pycogent/Makefile
305516 biology/pycogent/distinfo
305516 biology/pycogent/pkg-plist
- Update to 1.5.3
- Trim Makefile headers
Sun, 10 Jun 2012
[ 18:42 swills ] Original commit 
1.8 arabic/arabtex/Makefile
1.5 archivers/p5-Archive-SimpleExtractor/Makefile
1.20 archivers/p5-POE-Filter-Zlib/Makefile
1.7 archivers/p5-PerlIO-via-Bzip2/Makefile
1.12 audio/gigedit/Makefile
1.8 audio/p5-Filesys-Virtual-DAAP/Makefile
1.9 audio/p5-Net-DAAP-Client/Makefile
1.6 benchmarks/p5-Benchmark-Stopwatch/Makefile
1.28 biology/p5-AcePerl/Makefile
1.28 biology/p5-Bio-Das/Makefile

(Only the first 10 of 639 ports in this commit are shown above. View all ports for this commit)
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
  RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:             ports/168208
Approved by:    portmgr (miwi)
Thu, 11 Aug 2011
[ 11:37 wen ] Original commit 
1.7 biology/pycogent/Makefile
1.5 biology/pycogent/distinfo
1.5 biology/pycogent/pkg-plist
- Update to 1.5.1
Sat, 25 Jun 2011
[ 07:21 nivit ] Original commit 
1.6 biology/pycogent/Makefile
1.12 databases/py-Elixir/Makefile
1.10 games/anki/Makefile.inc
1.11 games/py-anki/Makefile
- Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy
  (This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
Wed, 10 Nov 2010
[ 08:52 wen ] Original commit 
1.5 biology/pycogent/Makefile
1.4 biology/pycogent/distinfo
1.4 biology/pycogent/pkg-plist
- Update to 1.5.0
Tue, 1 Jun 2010
[ 06:57 wen ] Original commit 
1.4 biology/pycogent/Makefile
1.3 biology/pycogent/distinfo
1.3 biology/pycogent/pkg-plist
- Update to 1.4.1
Thu, 17 Dec 2009
[ 06:51 wen ] Original commit 
1.3 biology/pycogent/Makefile
1.2 biology/pycogent/distinfo
1.2 biology/pycogent/pkg-plist
- Update to 1.4
- Update my mail address to FreeBSD
Sat, 22 Aug 2009
[ 00:15 amdmi3 ] Original commit 
1.22 benchmarks/iperf/Makefile
1.24 benchmarks/lmbench/Makefile
1.14 benchmarks/sysbench/Makefile
1.26 biology/avida/Makefile
1.2 biology/libsbml/Makefile
1.23 biology/mopac/Makefile
1.10 biology/protomol/Makefile
1.2 biology/pycogent/Makefile
1.9 cad/adms/Makefile
1.7 cad/atlc/Makefile

(Only the first 10 of 78 ports in this commit are shown above. View all ports for this commit)
- Switch SourceForge ports to the new File Release System: categories starting
with B,C
Mon, 22 Jun 2009
[ 12:46 miwi ] Original commit 
1.109 biology/Makefile
1.1 biology/pycogent/Makefile
1.1 biology/pycogent/distinfo
1.1 biology/pycogent/pkg-descr
1.1 biology/pycogent/pkg-plist
PyCogent is a software library for genomic biology. It is a fully integrated
and thoroughly tested framework for: controlling third-party applications;
devising workflows; querying databases; conducting novel probabilistic
analyses of biological sequence evolution; and generating publication quality
graphics. It is distinguished by many unique built-in capabilities (such as
true codon alignment) and the frequent addition of entirely new methods for
the analysis of genomic data.

WWW:    http://pycogent.sourceforge.net/

PR:             ports/135863
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 15

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
cups-filtersJul 03
libressl*Jul 03
linux-c6-openssl*Jul 03
mingw32-openssl*Jul 03
openssl*Jul 03
cinepaint*Jul 01
darktable*Jul 01
dcraw*Jul 01
dcraw-m*Jul 01
exact-image*Jul 01
flphoto*Jul 01
freeimage*Jul 01
kodi*Jul 01
libraw*Jul 01
libxml2Jul 01

26 vulnerabilities affecting 52 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24973
Broken 209
Deprecated 48
Ignore 506
Forbidden 1
Restricted 204
No CDROM 94
Vulnerable 31
Expired 1
Set to expire 36
Interactive 0
new 24 hours 12
new 48 hours27
new 7 days81
new fortnight112
new month191

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.