FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

I am looking for an LTO tape library. Do you have one to spare?
Port details
pyfasta 0.5.2_1 biology on this many watch lists=0 search for ports that depend on this port
Fast, memory-efficient, pythonic access to fasta sequence files
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 18 Nov 2009 05:53:48
Also Listed In: python
License: MIT


pyfasta is a python module for fast, memory-efficient, pythonic
access to fasta sequence files.

WWW: http://bitbucket.org/brentp/biostuff/src/ 
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Build:
  1. math/py-numpy
  2. devel/py-setuptools27
  3. lang/python27
Required To Run:
  1. math/py-numpy
  2. devel/py-setuptools27
  3. lang/python27
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/pyfasta/ && make install clean
To add the package: pkg install biology/pyfasta


Configuration Options
     No options to configure

Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/
  2. http://pypi.crate.io/packages/source/p/pyfasta/
  3. http://pypi.python.jp/pyfasta/
  4. http://pypi.python.org/packages/source/p/pyfasta/

Number of commits found: 22

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
10 Sep 2014 20:50:37
Original commit files touched by this commit  0.5.2_1
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
06 Apr 2014 04:05:43
Original commit files touched by this commit  0.5.2
Revision:350289
wen search for other commits by this committer
- Update to 0.5.2
- Add LICENSE
10 Mar 2014 20:55:22
Original commit files touched by this commit  0.5.1_3
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
31 Jan 2014 12:31:24
Original commit files touched by this commit  0.5.1_2
Revision:341984
miwi search for other commits by this committer
- Convert to PYDISTUTILS_AUTOPLIST
- Stage support
- Bump PORTREV
13 Jan 2014 21:00:04
Original commit files touched by this commit  0.5.1_1
Revision:339634
rene search for other commits by this committer
Python cleanup:
- USE_PYTHON* = 2.X -> USE_PYTHON* = 2
- USE_PYTHON* = 2.X+ -> USE_PYTHON* = yes
Reviewed by:	python (mva, rm)
Approved by:	portmgr-lurkers (mat)
26 Oct 2013 00:52:36
Original commit files touched by this commit  0.5.1_1
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
04 Oct 2013 08:09:02
Original commit files touched by this commit  0.5.1
Revision:329270
wen search for other commits by this committer
- Update to 0.5.1
20 Sep 2013 15:55:44
Original commit files touched by this commit  0.4.5
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
01 Jun 2013 14:22:36
Original commit files touched by this commit  0.4.5
Revision:319570
wen search for other commits by this committer
- Trim Makefile headers
23 Feb 2012 13:43:25
Original commit files touched by this commit  0.4.5
wen search for other commits by this committer
- Update to 0.4.5
13 Oct 2011 06:27:34
Original commit files touched by this commit  0.4.4
wen search for other commits by this committer
- Update to 0.44
02 Jun 2011 01:38:55
Original commit files touched by this commit  0.4.3
wen search for other commits by this committer
- Update to 0.4.3
13 Apr 2011 09:11:20
Original commit files touched by this commit  0.4.2
wen search for other commits by this committer
- Update to 0.4.2
02 Dec 2010 13:42:09
Original commit files touched by this commit  0.4.1
wen search for other commits by this committer
- Update to 0.4.1
26 Oct 2010 00:34:36
Original commit files touched by this commit  0.4.0
wen search for other commits by this committer
- Update to 0.4.0
18 Aug 2010 14:09:35
Original commit files touched by this commit  0.3.9
glarkin search for other commits by this committer
- Update USE_PYTHON in Makefile to reflect upstream Python
  dependency version requirement

PR:             ports/149251
Submitted by:   glarkin
Approved by:    wen (via email)
19 Mar 2010 08:32:48
Original commit files touched by this commit  0.3.9
wen search for other commits by this committer
- Update to 0.3.9
24 Dec 2009 03:14:34
Original commit files touched by this commit  0.3.7
wen search for other commits by this committer
- Update to 0.3.7
21 Dec 2009 03:29:55
Original commit files touched by this commit  0.3.5
wen search for other commits by this committer
- Update to 0.3.5
16 Dec 2009 12:48:04
Original commit files touched by this commit  0.3.4
wen search for other commits by this committer
- Update to 0.3.4
06 Dec 2009 08:47:36
Original commit files touched by this commit  0.3.3
wen search for other commits by this committer
- Update to 0.3.3
18 Nov 2009 05:53:17
Original commit files touched by this commit  0.3.1
wen search for other commits by this committer
pyfasta is a python module for fast, memory-efficient, pythonic
access to fasta sequence files.

WWW:    http://bitbucket.org/brentp/biostuff/src/

Number of commits found: 22

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
asterisk11Sep 18
squidSep 18
squid33Sep 18
dbusSep 17
nginxSep 16
nginx-develSep 16
phpmyadminSep 13
ossec-hids-clientSep 11
ossec-hids-localSep 11
ossec-hids-serverSep 11
chromiumSep 09
trafficserverSep 05
apache22*Sep 03
apache22-event-mpm*Sep 03
apache22-itk-mpm*Sep 03

8 vulnerabilities affecting 19 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24064
Broken 118
Deprecated 49
Ignore 370
Forbidden 4
Restricted 203
No CDROM 94
Vulnerable 21
Expired 4
Set to expire 44
Interactive 0
new 24 hours 6
new 48 hours11
new 7 days21
new fortnight73
new month235

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.