FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

non port: head/biology/pyfasta/Makefile
SVNWeb

Number of commits found: 23

Sun, 19 Oct 2014
[ 07:38 mva ] Original commit   Revision:371171
371171 benchmarks/pybench/Makefile
371171 benchmarks/tsung/Makefile
371171 biology/py-biopython/Makefile
371171 biology/pycogent/Makefile
371171 biology/pyfasta/Makefile
371171 biology/python-nexus/Makefile
371171 biology/seqan/Makefile
371171 biology/velvet/Makefile
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
Wed, 10 Sep 2014
[ 20:50 gerald ] Original commit   Revision:367888
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile

(Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Sun, 6 Apr 2014
[ 04:05 wen ] Original commit   Revision:350289
350289 biology/pyfasta/Makefile
350289 biology/pyfasta/distinfo
- Update to 0.5.2
- Add LICENSE
Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit   Revision:347809
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile

(Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Fri, 31 Jan 2014
[ 12:31 miwi ] Original commit   Revision:341984
341984 biology/pyfasta/Makefile
341984 biology/pyfasta/pkg-plist
- Convert to PYDISTUTILS_AUTOPLIST
- Stage support
- Bump PORTREV
Mon, 13 Jan 2014
[ 21:00 rene ] Original commit   Revision:339634
339634 accessibility/accerciser/Makefile
339634 accessibility/at-spi/Makefile
339634 accessibility/orca/Makefile
339634 accessibility/py-atspi/Makefile
339634 accessibility/py-papi/Makefile
339634 archivers/rpm4/Makefile
339634 astro/astrometry/Makefile
339634 astro/py-metar/Makefile
339634 astro/pyephem/Makefile
339634 audio/alsa-lib/Makefile

(Only the first 10 of 702 ports in this commit are shown above. View all ports for this commit)
Python cleanup:
- USE_PYTHON* = 2.X -> USE_PYTHON* = 2
- USE_PYTHON* = 2.X+ -> USE_PYTHON* = yes
Reviewed by:	python (mva, rm)
Approved by:	portmgr-lurkers (mat)
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit   Revision:331644
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile

(Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 4 Oct 2013
[ 08:09 wen ] Original commit   Revision:329270
329270 biology/pyfasta/Makefile
329270 biology/pyfasta/distinfo
329270 biology/pyfasta/pkg-descr
- Update to 0.5.1
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sat, 1 Jun 2013
[ 14:22 wen ] Original commit   Revision:319570
319570 astro/p5-GPS-OID/Makefile
319570 astro/p5-Starlink-AST/Makefile
319570 astro/py-aipy/Makefile
319570 astro/pyephem/Makefile
319570 audio/py-pyliblo/Makefile
319570 biology/p5-Bio-SCF/Makefile
319570 biology/paml/Makefile
319570 biology/pyfasta/Makefile
- Trim Makefile headers
Thu, 23 Feb 2012
[ 13:43 wen ] Original commit 
1.13 biology/pyfasta/Makefile
1.12 biology/pyfasta/distinfo
- Update to 0.4.5
Thu, 13 Oct 2011
[ 06:27 wen ] Original commit 
1.12 biology/pyfasta/Makefile
1.11 biology/pyfasta/distinfo
- Update to 0.44
Thu, 2 Jun 2011
[ 01:38 wen ] Original commit 
1.11 biology/pyfasta/Makefile
1.10 biology/pyfasta/distinfo
- Update to 0.4.3
Wed, 13 Apr 2011
[ 09:11 wen ] Original commit 
1.10 biology/pyfasta/Makefile
1.9 biology/pyfasta/distinfo
- Update to 0.4.2
Thu, 2 Dec 2010
[ 13:42 wen ] Original commit 
1.9 biology/pyfasta/Makefile
1.8 biology/pyfasta/distinfo
- Update to 0.4.1
Tue, 26 Oct 2010
[ 00:34 wen ] Original commit 
1.8 biology/pyfasta/Makefile
1.7 biology/pyfasta/distinfo
- Update to 0.4.0
Wed, 18 Aug 2010
[ 14:09 glarkin ] Original commit 
1.7 biology/pyfasta/Makefile
- Update USE_PYTHON in Makefile to reflect upstream Python
  dependency version requirement

PR:             ports/149251
Submitted by:   glarkin
Approved by:    wen (via email)
Fri, 19 Mar 2010
[ 08:32 wen ] Original commit 
1.6 biology/pyfasta/Makefile
1.6 biology/pyfasta/distinfo
- Update to 0.3.9
Thu, 24 Dec 2009
[ 03:14 wen ] Original commit 
1.5 biology/pyfasta/Makefile
1.5 biology/pyfasta/distinfo
- Update to 0.3.7
Mon, 21 Dec 2009
[ 03:29 wen ] Original commit 
1.4 biology/pyfasta/Makefile
1.4 biology/pyfasta/distinfo
- Update to 0.3.5
Wed, 16 Dec 2009
[ 12:48 wen ] Original commit 
1.3 biology/pyfasta/Makefile
1.3 biology/pyfasta/distinfo
- Update to 0.3.4
Sun, 6 Dec 2009
[ 08:47 wen ] Original commit 
1.2 biology/pyfasta/Makefile
1.2 biology/pyfasta/distinfo
1.2 biology/pyfasta/pkg-plist
- Update to 0.3.3
Wed, 18 Nov 2009
[ 05:53 wen ] Original commit 
1.116 biology/Makefile
1.1 biology/pyfasta/Makefile
1.1 biology/pyfasta/distinfo
1.1 biology/pyfasta/pkg-descr
1.1 biology/pyfasta/pkg-plist
pyfasta is a python module for fast, memory-efficient, pythonic
access to fasta sequence files.

WWW:    http://bitbucket.org/brentp/biostuff/src/

Number of commits found: 23

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
firefoxDec 01
firefox-esrDec 01
libxulDec 01
linux-firefoxDec 01
linux-thunderbirdDec 01
thunderbirdDec 01
tsharkDec 01
tshark-liteDec 01
wiresharkDec 01
wireshark-liteDec 01
wireshark-qt5Dec 01
expat2*Nov 30
expat2*Nov 30
gnupg1*Nov 30
libgcrypt*Nov 30

18 vulnerabilities affecting 59 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 26916
Broken 313
Deprecated 147
Ignore 576
Forbidden 1
Restricted 213
No CDROM 82
Vulnerable 56
Expired 9
Set to expire 126
Interactive 0
new 24 hours 1
new 48 hours7
new 7 days46
new fortnight104
new month262

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.