FreshPorts -- The Place For Ports Sat, 4 Jul 2009 8:46 PM GMT
Do I have any twitter.com followers? I'd like to get control of twitter.com/pgcon, since I run pgcon...
Port details
pymol 1.0r2_3 biology on this many watch lists=2 search for ports that depend on this port
Free and Open-Source molecular modeling system
Maintained by: maho@FreeBSD.org search for ports maintained by this maintainer
Port Added: 13 Aug 2002 12:53:54
Also Listed In: python


PyMOL is a molecular graphics system with an embedded Python interpreter
designed for real-time visualization and rapid generation of
high-quality molecular graphics images and animations. It is fully extensible
and available free to everyone via the "Python" license.
PyMOL can be used to create images and animations with unprecedented ease.
It can also perform many other valuable tasks (such as editing PDB files)
to assist you in your research.

WWW: http://pymol.sourceforge.net/
CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon
Required To Build: math/py-numeric, lang/python26, devel/gmake
Required To Run: math/py-numeric, x11-toolkits/py-Pmw, lang/python26
Required Libraries: graphics/png, print/freetype2, graphics/libglut

To install the port: cd /usr/ports/biology/pymol/ && make install clean
To add the package: pkg_add -r pymol


Configuration Options
     No options to configure

Master Sites:
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/maho/pymol/
ftp://ftp.se.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/maho/pymol/
ftp://ftp.uk.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/maho/pymol/
ftp://ftp.ru.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/maho/pymol/
ftp://ftp.jp.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/maho/pymol/
ftp://ftp.tw.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/maho/pymol/
ftp://ftp.cn.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/maho/pymol/
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Number of commits found: 38

Commit History - (may be incomplete: see CVSWeb link above for full details)
DateByDescription
08 Jun 2009 23:30:55
Original commit files touched by this commit  1.0r2_3
miwi search for other commits by this committer
- Update lang/python26 and make Python 2.6.2 to the default Python version

Tested by:      3 pointyhat runs
Thanks to:      pav, gahr, lwhsu, mva, amdmi3
23 Jan 2009 16:28:36
Original commit files touched by this commit  1.0r2_2
flz search for other commits by this committer
- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).
27 Mar 2008 11:20:18
Original commit files touched by this commit  1.0r2_1
miwi search for other commits by this committer
- Add missing dependens
- Bump PORTREVISION

Submitted by:   pointyhat via pav
10 Mar 2008 00:57:15
Original commit files touched by this commit  1.0r2
maho search for other commits by this committer
Fix pkg-plist

Submitted by:   pav
07 Mar 2008 02:38:09
Original commit files touched by this commit  1.0r2
maho search for other commits by this committer
Update to 1.0r2.
02 Sep 2007 08:16:05
Original commit files touched by this commit  0.99rc6_2
rafan search for other commits by this committer
- Chase x11-toolkits/pmw renamed to x11-toolkits/py-Pmw

PR:             115302
19 May 2007 21:32:57
Original commit files touched by this commit  0.99rc6_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
09 Feb 2007 00:11:55
Original commit files touched by this commit  0.99rc6
maho search for other commits by this committer
Update to 0.99rc6.

PR:             108940
Submitted by:   CHAO Shin
17 Sep 2006 12:51:56
Original commit files touched by this commit  0.99rc1
maho search for other commits by this committer
Fix build on amd64

Submitted by:   kris
17 Sep 2006 02:32:58
Original commit files touched by this commit  0.99rc1
kris search for other commits by this committer
BROKEN on amd64 and ia64: Does not build
01 Jul 2006 06:06:21
Original commit files touched by this commit  0.99rc1
maho search for other commits by this committer
o Update to 0.99rc1
o add data dir to have working port[1]

PR:             95121[1]
Submitted by:   Sangwoo Shim <sangwoos at gmail.com>[1]

This commit is a result of hacks at the CodeFest Akihabara 2006 hosted by FSIJ.
04 May 2006 00:26:35
Original commit files touched by this commit  0.98_1
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
22 Jan 2006 08:20:34
Original commit files touched by this commit  0.98_1
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
12 Jan 2006 12:54:32
Original commit files touched by this commit  0.98_1
sem search for other commits by this committer
- Update graphics/libglut to 6.4.1.
- Shared lib version and PORTREVISION bumb for all affected ports.

While I'm here:
- Remove USE_MESA knob where it was (35 ports).
  It marked as depricated for 2 years.

PR:             ports/90247
Submitted by:   Ermal Lu?i <eri--@albabsd.org>
10 Oct 2005 10:08:23
Original commit files touched by this commit  0.98
maho search for other commits by this committer
Update to 0.9.8
26 Mar 2005 22:20:19
Original commit files touched by this commit  0.97
kris search for other commits by this committer
Try to unbreak on amd64 and ia64

Approved by:    portmgr (self)
24 Mar 2005 01:06:40
Original commit files touched by this commit  0.97
maho search for other commits by this committer
Fix build on amd64

Submitted by:   kris via pointy hat
Approved by:    portmgr (marcus)
07 Feb 2005 08:39:51
Original commit files touched by this commit  0.97
maho search for other commits by this committer
update to 0.97
24 Oct 2004 04:40:23
Original commit files touched by this commit  0.93
maho search for other commits by this committer
Forced commit
Actually this report was submitted by mharo,
and eik kindly told me how to fix.

PR:     71095
Submitted by:   mharo
24 Oct 2004 04:37:02
Original commit files touched by this commit  0.93
maho search for other commits by this committer
Avoid the use of != statements in ports Makefile

PR:             71095
Submitted by:   eik
06 May 2004 20:49:54
Original commit files touched by this commit  0.93
maho search for other commits by this committer
Make portlint happy by replacing space to tab

PR:             65409
Submitted by:   trevor
10 Apr 2004 17:07:10
Original commit files touched by this commit  0.93
trevor search for other commits by this committer
Trim whitespace.
20 Mar 2004 05:20:47
Original commit files touched by this commit  0.93
maho search for other commits by this committer
Do not hardcord PICFLAG
Submitted by:   ru
19 Mar 2004 04:20:12
Original commit files touched by this commit  0.93
maho search for other commits by this committer
Backout previous change of PICFLAG, since
behaviour of -fPIC and -fpic are different.
Here is the comment form obrien:

--
"-fpic" is a [minor?] optimization for machines that can handle it:

  -fpic
    Generate position-independent code (PIC) suitable for use in a shared
    library, if supported for the target machine. Such code accesses all
    constant addresses through a global offset table (GOT). The dynamic
    loader resolves the GOT entries when the program starts (the dynamic
    loader is not part of GCC; it is part of the operating system). If
    the GOT size for the linked executable exceeds a machine-specific
    maximum size, you get an error message from the linker indicating
(Only the first 15 lines of the commit message are shown above View all of this commit message)
18 Mar 2004 23:06:12
Original commit files touched by this commit  0.93
maho search for other commits by this committer
-fPIC is appropreate on all architectures.

Submitted by: kris
17 Mar 2004 10:47:29
Original commit files touched by this commit  0.93
maho search for other commits by this committer
1) update to 0.9.3
2) honor PREFIX & LOCALBASE
3) SIZEify
4) possible fix for amd64 and ia64
04 Feb 2004 05:21:48
Original commit files touched by this commit  0.90_1
marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
07 Nov 2003 20:40:50
Original commit files touched by this commit  0.90
anholt search for other commits by this committer
LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3.
20 Aug 2003 11:40:37
Original commit files touched by this commit  0.90
perky search for other commits by this committer
Fix build on python2.3
24 Jul 2003 08:06:17
Original commit files touched by this commit  0.90
maho search for other commits by this committer
Update to 0.90
03 May 2003 04:45:31
Original commit files touched by this commit  0.86
maho search for other commits by this committer
Updated to 0.8.6.

Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU>
Pkg-plist by: maho
07 Mar 2003 05:56:43
Original commit files touched by this commit  0.82_3
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
19 Nov 2002 23:01:49
Original commit files touched by this commit  0.82_3
maho search for other commits by this committer
1. add a missing dependency on png and unbreak.
2. change e-mail address of maho.
26 Aug 2002 06:13:29
Original commit files touched by this commit  0.82_3
perky search for other commits by this committer
o Fix examples directory path which is changed in last revision.

Submitted by:   Glenn Johnson <glennpj@charter.net>
25 Aug 2002 09:37:53
Original commit files touched by this commit  0.82_2
perky search for other commits by this committer
o Fix RUN_DEPENDS path (PMW -> Pmw)
o Fix DISTNAME which was broken by previous commit.
o Install example files

PR:             41977
Submitted by:   Glenn Johnson <glennpj@charter.net>
Approved by:    maintainer
22 Aug 2002 05:20:19
Original commit files touched by this commit  0.82_1
perky search for other commits by this committer
o Remove redundant dependency on py-tkinter.
o Bump PORTREVISION that I've missed on last commit.

Submitted by:   Glenn Johnson <glennpj@charter.net>
22 Aug 2002 04:35:32
Original commit files touched by this commit  0.82
perky search for other commits by this committer
Add a dependecy to x11-toolkits/pmw

PR:             41857
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Approved by:    maintainer
13 Aug 2002 12:53:44
Original commit files touched by this commit  0.82
perky search for other commits by this committer
Add pymol 0.82, Free and Open-Source molecular modeling system.

PR:             40694
Submitted by:   Nakata Maho <chat95@mbox.kyoto-inet.or.jp>

Number of commits found: 38

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet
SuperNews

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
nfsenJul 03
nagios*Jul 01
nagios-devel*Jul 01
nagios2*Jul 01
syslog-ng*Jul 01
syslog-ng2*Jul 01
phpmyadminJun 30
tor*Jun 23
tor*Jun 23
cscopeJun 16
cscopeJun 16
finchJun 16
joomla15Jun 16
libpurpleJun 16
pidginJun 16

6 vulnerabilities affecting 11 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 20376
Broken 145
Deprecated 44
Ignore 763
Forbidden 5
Restricted 387
No CDROM 139
Vulnerable 56
Expired 17
Set to expire 25
Interactive 81
new 24 hours 3
new 48 hours4
new 7 days70
new fortnight95
new month181

This site
What is FreshPorts?
About the Authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Add tab to Netscape 6

Servers and bandwidth provided by
New York Internet
SuperNews
Valid HTML, CSS, and RSS.
Copyright © 2000-2008 DVL Software Limited. All rights reserved.
This page created in 0.236 seconds.