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Port details
recombine Program to fit population models across sites
1.41 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 06 Aug 2001 11:49:53
License: not specified in port
Recombine fits a model which has a single population of constant size with a
single recombination rate across all sites.  It can accomodate either plain
DNA or RNA data or SNP (single nucleotide polymorphism) data.

Recombine forms part of the Lamarc (Likelihood Analysis with Metropolis
Algorithm using Random Coalescence) suite.  See:

  http://evolution.genetics.washington.edu/lamarc.html

WWW: http://evolution.genetics.washington.edu/lamarc/recombine.html
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/recombine/ && make install clean
To add the package: pkg install recombine

PKGNAME: recombine

distinfo:

SHA256 (recombine1.41.src.doc.tar.gz) = e247810ef31414f500f9c118b6462b549c761562140519f7c57f305fcb284643
SIZE (recombine1.41.src.doc.tar.gz) = 149129

There are no ports dependent upon this port


Configuration Options
===> The following configuration options are available for recombine-1.41:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

USES:
shebangfix

Master Sites:
  1. http://evolution.gs.washington.edu/lamarc/recombine/

Number of commits found: 14

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 Jul 2016 11:04:14
Original commit files touched by this commit  1.41
Revision:418767
mat search for other commits by this committer
When there is a do-install target, do not use a post-install target, do
everything at once.  Sometime, rename post-install into a options helper
target.

I did not fix ports that were such a mess that I could not figure out
what they really wanted to do.  I also did not change ports that had
some version of an auto-plist code in post-install, for the same reason.

With hat:	portmgr
Sponsored by:	Absolight
16 Feb 2014 11:39:42
Original commit files touched by this commit  1.41
Revision:344537
ehaupt search for other commits by this committer
- Support staging
- Use shebangfix
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.41
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Jun 2013 19:15:14
Original commit files touched by this commit  1.41
Revision:321313
bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. mute mkdir;
. use PLIST_FILES and PORTDOCS at Makefile;
. remove pkg-plist;
. trim Makefile headers;
. remove article from COMMENT;
. pet portlint -- use opne space after WWW: at pkg-descr.
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.41
miwi search for other commits by this committer
- Get Rid MD5 support
21 Dec 2009 02:19:12
Original commit files touched by this commit  1.41
dougb search for other commits by this committer
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
25 Jan 2007 12:22:50
Original commit files touched by this commit  1.41
vd search for other commits by this committer
Fix master sites, un-deprecate and update biology/recombine to 1.41.
10 Dec 2006 12:36:15
Original commit files touched by this commit  1.40
gabor search for other commits by this committer
- Deprecate
- Set EXPIRATION_DATE

Approved by:    erwin (mentor)
24 Nov 2005 00:04:00
Original commit files touched by this commit  1.40
pav search for other commits by this committer
- Add SHA256
20 Nov 2004 08:09:49
Original commit files touched by this commit  1.40
linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
31 Mar 2004 03:12:58
Original commit files touched by this commit  1.40
trevor search for other commits by this committer
SIZEify (maintainer timeout)
22 Oct 2003 09:29:55
Original commit files touched by this commit  1.40
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
07 Mar 2003 05:56:43
Original commit files touched by this commit  1.40
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
06 Aug 2001 15:49:53
files touched by this commit
wjv search for other commits by this committer
Add recombine 1.40, a program to fit population models across sites.    

Number of commits found: 14

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