recombine 1.41 biology =0

A program to fit population models across sites

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
Port Added: 06 Aug 2001 11:49:53
License: not specified in port

---

---

Recombine fits a model which has a single population of constant size with a
single recombination rate across all sites.  It can accomodate either plain
DNA or RNA data or SNP (single nucleotide polymorphism) data.

Recombine forms part of the Lamarc (Likelihood Analysis with Metropolis
Algorithm using Random Coalescence) suite.  See:

  http://evolution.genetics.washington.edu/lamarc.html

WWW:    http://evolution.genetics.washington.edu/lamarc/recombine.html

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMonThere are no ports dependent upon this port

---

To install the port: cd /usr/ports/biology/recombine/ && make install clean
To add the package: pkg_add -r recombine

---

Configuration Options

     No options to configure

---

Master Sites:

http://evolution.gs.washington.edu/lamarc/recombine/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Get Rid MD5 support

For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.

Fix master sites, un-deprecate and update biology/recombine to 1.41.

- Deprecate
- Set EXPIRATION_DATE

Approved by:    erwin (mentor)

- Add SHA256

With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.

SIZEify (maintainer timeout)

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.

Add recombine 1.40, a program to fit population models across sites.    

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities