seaview 2006.02.13_8 biology =1

Multiple DNA/protein sequence alignment editor
Maintained by: fernan@iib.unsam.edu.ar
Port Added: unknown
License: not specified in port

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SeaView is a multiple sequence alignment editor.

You can align DNA/protein sequences from several organisms, and find
out their relative postions in phylogenic tree.

Once SeaView is installed, you can open the on-line help window through
the 'Help' button to learn how to use SeaView.

Example mase files can be found at:

	ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/

WWW: http://pbil.univ-lyon1.fr/software/seaview.html

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required Libraries: x11-toolkits/fltk, print/pdflib
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/seaview/ && make install clean
To add the package: pkg_add -r seaview

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Configuration Options

     No options to configure

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Master Sites:

ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Chase pdflib.so version and bump PORTREVISION accordingly.

- unbreak

Feature safe:   yes

- Mark BROKEN: does not compile with new fltk

Reported by:    pointyhat

- Get Rid MD5 support

- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi

- Chase x11-toolkits/fltk update

- update to jpeg-8

- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin

- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)

- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:    portmgr (xorg cleanup)

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

Chase pdf library and bump PORTREVISION.

- Update to 2006.02.13

PR:             95281
Submitted by:   maintainer

Update to 2006.01.25.

PR:             ports/93051
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)

- New upstream version; two patches incorporated.

PR:             90140
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    clement (mentor)

- Update to 2005.13.07 to make fetchable again

PR:             89976
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    clement (mentor)

BROKEN: Size mismatch

- Update to 2004.12.16

PR:             ports/75205
Submitted by:   maintainer

Not a real update with the last patch.
The real update here.

- This update brings seaview to the latest release (dated 09.24.04
in the FTP site).

- While here add a modeline for vi, and fix a tab (cosmetic)

- Make portlint happy.

PR:             ports/74897
Submitted by:   maintainer

unbreak, only minor changes in the distfiles (see PR)

Since the distfile has no version number, put it in
DIST_SUBDIR=    ${PORTNAME}-${PORTVERSION}

PR:             66817
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)

BROKEN: Checksum mismatch

- Update to version 2003.11.25

- Update to new version 2003.11.17
- Unbreak this port

Mark BROKEN: distfile has changed.

Upgrade to 2003.01.21.  Appears to only add some more file export/print
options.  Additional patches were necessary since the fltk port seems
to have been upgraded and thus also broken this port (which would
been already broken due to the checksum failure).

Add back the WWW which was inexplicably deleted in a previous
revision.  Make a few organisational improvements.  However, be
too lazy to move to pkg-message a note that really shouldn't
be necessary for the end user at all.

De-pkg-comment.

unbroke by upgrade to 20021018
drop maintainership

PR:             45466
Submitted by:   old maintainer

Update WWW

Bump XForms lib. version.

BROKEN: Checksum is incorrect

Change PKGDIR from pkg/ to .  Also fix places where ${PKGDIR} is   spelled out
(many of which are ${PKGDIR}/MESSAGE -> ${PKGMESSAGE} type   fixes that
shouldn't have been necessary) and the string "/pkg/"   appear.    

Convert category biology to new layout.  

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