non port: biology/seaview/Makefile |
Number of commits found: 76 |
Friday, 12 Jan 2024
|
15:11 Baptiste Daroussin (bapt)
MANPREFIX: eliminate its usage
While here move manpages to share/man
d432922 |
Friday, 28 Jul 2023
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17:13 Daniel Engberg (diizzy)
*/*: Bump jpeg-turbo users treewide
New major version 3.0.0
664a2fa |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 20 Jul 2022
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14:20 Tobias C. Berner (tcberner)
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca>
* Johann Visagie <johann@egenetics.com>
* Johann Visagie <wjv@FreeBSD.org>
* Mauricio Herrera Cuadra <mauricio@arareko.net>
* Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
* Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@niid.go.jp>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Razi Khaja <razi@genet.sickkids.on.ca>
* Reed A. Cartwright <cartwright@asu.edu>
* Ryo MIYAMOTO
* Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Sangwoo Shim <sangwoos@gmail.com>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Tassilo Philipp <tphilipp@potion-studios.com>
* Tony Maher
* Tony Maher <tonym@biolateral.com.au>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Yonatan <onatan@gmail.com>
* Yuri Victorovich <yuri@rawbw.com>
* ballen
* barnhart@genetics.wustl.edu
* camson@bilateral.com.au
* chuynh@biolateral.com.au
* dbader@eece.unm.edu
* frankch@waru.life.nthu.edu.tw
* h2
* lentferj
* maho@FreeBSD.org
* mzaki@biol.s.u-tokyo.ac.jp
* tonym
* wen@FreeBSD.org
With hat: portmgr
37526bb |
Monday, 6 Dec 2021
|
01:02 Muhammad Moinur Rahman (bofh)
biology/seaview: Update version 5.0.4=>5.0.5
Relnotes: http://doua.prabi.fr/software/seaview_data/CHANGES
908f72f |
Saturday, 14 Aug 2021
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08:58 Alexey Dokuchaev (danfe)
biology/seaview: in preparation to FLTK update, unbreak the port
Ensure there is only one variable definition per each object, as
the C (and C++) standards mandated for years and is now enforced
by modern toolchains.
0ee21a3 |
Tuesday, 6 Apr 2021
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14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Wednesday, 17 Feb 2021
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21:59 linimon
Mark BROKEN in 13/14 (via latest llvm update).
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Monday, 22 Jun 2020
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17:34 bofh
biology/seaview: Update version 5.0.3=>5.0.4
Relnotes: http://doua.prabi.fr/software/seaview_data/CHANGES
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Sunday, 14 Jun 2020
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09:24 bofh
biology/seaview: Update version 5.0.2=>5.0.3
Relnotes: http://doua.prabi.fr/software/seaview_data/CHANGES
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Sunday, 22 Mar 2020
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16:54 bofh
biology/seaview: Update version 5.0=>5.0.2
Relnotes: http://doua.prabi.fr/software/seaview
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Wednesday, 5 Feb 2020
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18:35 bofh
biology/seaview: Update version 4.7=>5.0
Relnotes:http://doua.prabi.fr/software/seaview
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Monday, 4 Nov 2019
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21:08 zeising
Add USES=xorg USES=gl, ports categories b
Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories
starting with 'b'.
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Sunday, 22 Jul 2018
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03:22 bofh
biology/seaview: Updatye version 4.6.5=>4.7
Relnotes: http://doua.prabi.fr/software/seaview_data/CHANGES
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Tuesday, 24 Apr 2018
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12:31 bofh
biology/seaview: Update version 4.6.3=>4.6.5
- Pet portlint
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Friday, 5 Jan 2018
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17:40 bofh
biology/seaview: Update version 4.6.2=>4.6.3
- Added pkg-plist to pet portlint
Relnotes: http://doua.prabi.fr/software/seaview_data/CHANGES
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Friday, 21 Jul 2017
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17:33 bofh
biology/seaview: Update version 4.6.1=>4.6.2
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Tuesday, 11 Apr 2017
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18:58 bofh
biology/seaview: Update version 4.6=>4.6.1
- Add PORTSCOUT to ignore non-existent 4.6.1.3 version
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Friday, 10 Jun 2016
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11:06 bofh
biology/seaview: Update version 4.5.4.8=>4.6
- UNBREAK
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Friday, 3 Jun 2016
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16:44 antoine
Deprecate ports broken for more than 6 months
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Friday, 1 Apr 2016
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13:29 mat
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Monday, 2 Nov 2015
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08:14 marino
biology/seaview: Broken, Does not fetch (checksum mismatch)
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Tuesday, 20 Oct 2015
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11:51 bofh
biology/seaview: Update version 4.5.4.7=>4.5.4.8
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Thursday, 1 Oct 2015
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10:02 bofh
biology/seaview: Update version 4.5.4.6=>4.5.4.7
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Tuesday, 15 Sep 2015
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14:44 bofh
biology/seaview: Update version 4.5.4.4=>4.5.4.6
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Friday, 22 May 2015
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11:09 bofh
biology/seaview: Update version 4.5.4=>4.5.4.4
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Saturday, 11 Apr 2015
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15:49 marino
biology/seaview: Unbreak -- it fetches fine
The second MASTER_SITES entry worked fine, so this must have been a
transient fetch problem. I removed the first entry which is still
failing though.
Approved by: blanket
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Sunday, 5 Apr 2015
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17:55 bapt
Mark as broken unfetchable ports
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Tuesday, 24 Mar 2015
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10:15 bofh
biology/seaview: Update version 4.5.3.4=>4.5.4
- Remove dependency for libpdf as removed by upstream
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Monday, 16 Mar 2015
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12:07 bofh
biology/seaview: UNBREAK
- Update version 4.5.2=>4.5.3.4
- Add LICENSE (GPLv3)
- Remove PDFLIBS as OPTIONS as it is no loner an optional requirement
PR: 198602
Submitted by: pi
Approved by: bapt marino (implicit)
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Saturday, 21 Feb 2015
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07:35 antoine
Mark BROKEN: Fails to link, tries to use internal fltk symbols
c++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o
align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o
concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o
pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o
Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o
dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o \
-L/usr/local/lib -lfltk_images -lfltk \
-lXft -lXext -lfontconfig -ljpeg -lpng -lXinerama -L/usr/local/lib -lpdf \
-lX11 -lm -lz -pthread
seaview.o: In function `clipboard_contains_alignment(char const*)':
seaview.cxx:(.text+0x1c14): undefined reference to `fl_selection_buffer'
Reported by: pkg-fallout
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Wednesday, 24 Dec 2014
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00:14 bofh
Change my non-FreeBSD MAINTAINER mail to bofh@
Approved by: bapt
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Saturday, 20 Dec 2014
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17:27 bapt
Cleanup plist
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Wednesday, 10 Sep 2014
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20:50 gerald
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit)
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Wednesday, 4 Jun 2014
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06:28 miwi
- Update to 4.5.2
- Pass maintainership to submitter
PR: 190564
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Wednesday, 21 May 2014
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05:40 miwi
- Update to 4.5.1
PR: 187975
Submitted by: Ports Fury
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Thursday, 27 Feb 2014
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08:46 miwi
- Stage support
- Update to version 4.4.3
PR: 187041
Submitted by: ports fury
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Wednesday, 11 Dec 2013
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14:43 bapt
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
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Friday, 20 Sep 2013
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15:55 bapt
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Wednesday, 14 Aug 2013
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22:35 ak
- Remove MAKE_JOBS_SAFE variable
Approved by: portmgr (bdrewery)
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Monday, 15 Jul 2013
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14:49 miwi
- Update to 4.4.2
PR: 180515
Submitted by: Ports Fury
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Tuesday, 26 Mar 2013
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01:08 miwi
- Update to 4.4.1
PR: 177257
Submitted by: Ports Fury
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Wednesday, 23 Jan 2013
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15:00 makc
Bump PORTREVISION after DESKTOP_ENTRIES update
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Monday, 7 Jan 2013
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02:07 makc
- Update DESKTOP_ENTRIES:
* rephrase Comment field or use port ${COMMENT} if appropriate
* adjust Icon field according to the Desktop Entry Specification
* update Categories field: remove deprecated category Application;
set main category, if missing
- Remove indefinite article and/or rephrase COMMENT
- Trim Makefile header
- Other minor changes
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Tuesday, 30 Oct 2012
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20:31 pawel
- Update to version 4.4.0
- Mark MAKE_JOBS_SAFE
- Make dependency on print/pdflib optional
- Switch to PLIST_FILES
While here:
- Add missing deps
- Add desktop entry
PR: ports/172498
Submitted by: KATO Tsuguru <tkato432@yahoo.com>
Feature safe: yes
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Monday, 1 Oct 2012
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14:45 tabthorpe
- Reassign to the heap at maintainer's request
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Friday, 1 Jun 2012
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05:26 dinoex
- update png to 1.5.10
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Tuesday, 10 Jan 2012
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11:41 ale
Chase pdflib.so version and bump PORTREVISION accordingly.
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Thursday, 17 Nov 2011
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13:22 gahr
- unbreak
Feature safe: yes
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Friday, 4 Nov 2011
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22:14 pav
- Mark BROKEN: does not compile with new fltk
Reported by: pointyhat
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Sunday, 28 Mar 2010
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06:47 dinoex
- update to 1.4.1
Reviewed by: exp8 run on pointyhat
Supported by: miwi
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Tuesday, 23 Mar 2010
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21:14 gahr
- Chase x11-toolkits/fltk update
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Friday, 5 Feb 2010
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11:46 dinoex
- update to jpeg-8
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Friday, 31 Jul 2009
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13:57 dinoex
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by: edwin
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Sunday, 23 Mar 2008
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16:44 miwi
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION
Approved by: portmgr (xorg cleanup)
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Saturday, 19 May 2007
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20:32 flz
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
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Monday, 9 Oct 2006
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08:18 ale
Chase pdf library and bump PORTREVISION.
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Wednesday, 5 Apr 2006
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01:58 mnag
- Update to 2006.02.13
PR: 95281
Submitted by: maintainer
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Thursday, 9 Feb 2006
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10:33 lawrance
Update to 2006.01.25.
PR: ports/93051
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
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Saturday, 10 Dec 2005
|
14:04 tdb
- New upstream version; two patches incorporated.
PR: 90140
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by: clement (mentor)
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Tuesday, 6 Dec 2005
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15:13 tdb
- Update to 2005.13.07 to make fetchable again
PR: 89976
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by: clement (mentor)
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Wednesday, 16 Nov 2005
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04:36 kris
BROKEN: Size mismatch
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Saturday, 18 Dec 2004
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15:14 sem
- Update to 2004.12.16
PR: ports/75205
Submitted by: maintainer
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Saturday, 11 Dec 2004
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03:58 sem
Not a real update with the last patch.
The real update here.
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03:49 sem
- This update brings seaview to the latest release (dated 09.24.04
in the FTP site).
- While here add a modeline for vi, and fix a tab (cosmetic)
- Make portlint happy.
PR: ports/74897
Submitted by: maintainer
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Tuesday, 18 May 2004
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14:59 eik
unbreak, only minor changes in the distfiles (see PR)
Since the distfile has no version number, put it in
DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
PR: 66817
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
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Monday, 12 Apr 2004
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03:37 kris
BROKEN: Checksum mismatch
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Thursday, 29 Jan 2004
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10:09 krion
- Update to version 2003.11.25
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Monday, 17 Nov 2003
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13:36 krion
- Update to new version 2003.11.17
- Unbreak this port
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Thursday, 6 Nov 2003
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23:15 anholt
Mark BROKEN: distfile has changed.
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Thursday, 22 May 2003
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05:59 hoek
Upgrade to 2003.01.21. Appears to only add some more file export/print
options. Additional patches were necessary since the fltk port seems
to have been upgraded and thus also broken this port (which would
been already broken due to the checksum failure).
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Thursday, 20 Feb 2003
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16:51 knu
De-pkg-comment.
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Wednesday, 20 Nov 2002
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14:03 ijliao
unbroke by upgrade to 20021018
drop maintainership
PR: 45466
Submitted by: old maintainer
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Thursday, 4 Jul 2002
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09:20 mikeh
Bump XForms lib. version.
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Saturday, 18 May 2002
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02:36 kris
BROKEN: Checksum is incorrect
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Sunday, 8 Oct 2000
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11:23 asami
Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} is spelled out
(many of which are ${PKGDIR}/MESSAGE -> ${PKGMESSAGE} type fixes that
shouldn't have been necessary) and the string "/pkg/" appear.
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Number of commits found: 76 |