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non port: head/biology/seqtools/Makefile
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Number of commits found: 20

Sat, 8 Aug 2015
[ 11:22 pi ] Original commit 
393723 biology/seqtools/Makefile
393723 biology/seqtools/distinfo
biology/seqtools: 4.35 -> 4.36

Minor under-the-hood changes
Tue, 7 Jul 2015
[ 14:17 pi ] Original commit 
391503 biology/seqtools/Makefile
391503 biology/seqtools/distinfo
biology/seqtools: 4.34.1 -> 4.35

- Blixem bug fix in sorting features, RT 473624
- Compilation of the seqtools in parallel, RT 467905
- Fix bug with sorting by similarity/identity to first sequence (RT:473624)
- Fix an error compiling with multiple threads (RT:467905)
Wed, 6 May 2015
[ 20:30 pi ] Original commit 
385561 biology/seqtools/Makefile
385561 biology/seqtools/distinfo
385561 biology/seqtools/pkg-plist
biology/seqtools: 4.33 -> 4.34.1

Blixem
- Added functionality to shift-select a range of coordinates,
  and copy the reference/match sequence for that range.
- DNA search now highlights the resultant range of coordinates.
- Added a splitter bar to allow the variations track to be resized.
- Dotter
  Fix a crash pressing Esc on an undocked alignment or greyramp tool.
- All
  Code reorganisation: the codebase is now in C++ rather than C,
  and a new module 'gbtools' has been created for generic
  utility functions.
Tue, 31 Mar 2015
[ 18:04 pi ] Original commit 
382855 biology/seqtools/Makefile
382855 biology/seqtools/distinfo
biology/seqtools: 4.32 -> 4.33

- Blixem/Dotter
  Multi-dotter support; may now start multiple dotters from blixem
Thu, 12 Feb 2015
[ 12:04 pi ] Original commit 
378870 biology/seqtools/Makefile
378870 biology/seqtools/distinfo
biology/seqtools: 4.31 -> 4.32

- Blixem
  o Previously-unsupported GFF feature types can now be displayed
    as a new 'basic feature' type.
  o Styles are now applied to the detail view as well as the big
    picture, so feature display is more consistent across the two
    views.
  o Fix a bug where styles were not being applied to
    dynamically-loaded features.
- Dotter
  o Added a 'maximise' button for the greyramp tool.
  o Small fixes to inconsistencies in context-sensitive menus and
    keyboard shortcuts.
Sat, 13 Dec 2014
[ 18:10 pi ] Original commit 
374668 biology/seqtools/Makefile
374668 biology/seqtools/distinfo
biology/seqtools: 4.30 -> 4.31

Some changes to sqlite dependencies
Tue, 4 Nov 2014
[ 13:19 pi ] Original commit 
372142 biology/seqtools/Makefile
372142 biology/seqtools/distinfo
biology/seqtools: 4.29 -> 4.30

- Blixem
  o Fix potential crash with internal processing
  o Fix two bugs in data input
Wed, 15 Oct 2014
[ 18:46 pi ] Original commit 
370943 biology/seqtools/Makefile
370943 biology/seqtools/distinfo
370943 biology/seqtools/pkg-plist
biology/seqtools: 4.28 -> 4.29

- Blixem
  o Added the facility to run Dotter on an ad-hoc sequence (RT:408836).
  o Added the facility to run Dotter against a transcript.
- Dotter
  Minimise the greyramp tool to a simple contrast slider. Use
  Ctrl-G to toggle between this and the full greyramp tool.
- Belvu
  Fix a bug with tree bootstrapping in Belvu.
Mon, 4 Aug 2014
[ 23:06 bapt ] Original commit 
364067 biology/seqtools/Makefile
364067 biology/ugene/Makefile
USES=execinfo
Thu, 31 Jul 2014
[ 03:17 pi ] Original commit 
363530 biology/seqtools/Makefile
363530 biology/seqtools/distinfo
biology/seqtools: 4.27 -> 4.28
Tue, 15 Jul 2014
[ 23:11 adamw ] Original commit 
362014 archivers/bzip2/Makefile
362014 archivers/macutils/Makefile
362014 archivers/ruby-lha/Makefile
362014 archivers/tclmkziplib/Makefile
362014 astro/wcslib/Makefile
362014 audio/abcmidi/Makefile
362014 audio/calf/Makefile
362014 audio/chordpack/Makefile
362014 audio/eawpats/Makefile
362014 audio/espeak/Makefile

(Only the first 10 of 115 ports in this commit are shown above. View all ports for this commit)
Add OPTIONS_DEFINE=DOCS for ports with %%PORTDOCS%% in the plist.

Where possible, correct a few instances where PORTDOCS was being used
to flag stuff in EXAMPLESDIR. For some ports, mostly those owned by
ruby@, PORTDOCS is applied to pretty much everything whether it's
documentation or example.
Sat, 12 Jul 2014
[ 18:56 pi ] Original commit 
361635 biology/seqtools/Makefile
361635 biology/seqtools/distinfo
biology/seqtools: 4.26 -> 4.27
Fri, 27 Jun 2014
[ 17:21 miwi ] Original commit 
359586 archivers/rpm5/Makefile
359586 astro/osmium/Makefile
359586 audio/firefly/Makefile
359586 audio/gmpc-magnatune/Makefile
359586 audio/gmpc/Makefile
359586 audio/gogglesmm/Makefile
359586 audio/musicpd/Makefile
359586 biology/seqtools/Makefile
359586 chinese/sunpinyin/Makefile
359586 comms/gnokii/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
- Chase database/sqlite3 slib bump

Approved by:	portmgr (myself)
Sun, 8 Jun 2014
[ 19:51 olgeni ] Original commit 
357070 audio/py-pylast/Makefile
357070 audio/sphinxbase/Makefile
357070 biology/seqtools/Makefile
357070 cad/brickutils/Makefile
357070 cad/kicad-devel/Makefile
357070 cad/pcb/Makefile
357070 chinese/msttf/Makefile
357070 converters/asr10/Makefile
357070 converters/bibtexconv/Makefile
357070 databases/luasql-postgres/Makefile

(Only the first 10 of 101 ports in this commit are shown above. View all ports for this commit)
Remove all space characters from Makefile assignments.

No functional changes included.

CR:		D193 (except math/sedumi)
Approved by:	portmgr (bapt)
Fri, 2 May 2014
[ 19:00 pi ] Original commit 
352838 biology/seqtools/Makefile
352838 biology/seqtools/distinfo
biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgrading

Submitted by:   pi (myself)
Approved by:    jadawin (mentor)
Thu, 1 May 2014
[ 16:50 pi ] Original commit 
352761 biology/seqtools/Makefile
352761 biology/seqtools/distinfo
biology/seqtools: 4.24 -> 4.25

PR:             ports/186299
Submitted by:   pi (myself)
Approved by:    jadawin (mentor)
Wed, 12 Feb 2014
[ 14:03 mat ] Original commit 
343923 biology/seqtools/Makefile
343923 biology/seqtools/pkg-plist
343923 databases/dbtool/Makefile
343923 databases/dbtool/pkg-plist
343923 games/gnubg/Makefile
343923 games/gnubg/pkg-plist
343923 games/pengpong/Makefile
343923 games/pengpong/pkg-plist
343923 games/seabattle/Makefile
343923 games/seabattle/pkg-plist

(Only the first 10 of 20 ports in this commit are shown above. View all ports for this commit)
Fix old makeplist bug.

Pointy hat to:	people who blindly use makeplist
Sponsored by:	Absolight
Tue, 24 Dec 2013
[ 17:23 wg ] Original commit 
337375 biology/seqtools/Makefile
337375 biology/seqtools/distinfo
biology/seqtools: update to 4.24

PR:		ports/185162
Submitted by:	maintainer
Thu, 14 Nov 2013
[ 20:09 wg ] Original commit 
333786 biology/seqtools/Makefile
333786 biology/seqtools/distinfo
biology/seqtools: update to 4.23

PR:		ports/183960
Submitted by:	maintainer
Sun, 10 Nov 2013
[ 11:01 wg ] Original commit 
333374 MOVED
333374 biology/Makefile
333374 biology/dotter
333374 biology/seqtools
333374 biology/seqtools/Makefile
333374 biology/seqtools/distinfo
333374 biology/seqtools/pkg-descr
333374 biology/seqtools/pkg-plist
biology/seqtools: Tools for visualising sequence alignments

Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.

Belvu is a multiple sequence alignment viewer and phylogenetic tool.

Dotter is a graphical dot-matrix program for detailed comparison
of two sequences.

WWW: http://www.sanger.ac.uk/resources/software/seqtools/

PR:		ports/183801
Submitted by:	Kurt Jaeger <fbsd-ports opsec.eu>

Number of commits found: 20

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