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non port: head/biology/seqtools/pkg-plist

Number of commits found: 4

Wed, 6 May 2015
[ 20:30 pi ] Original commit 
385561 biology/seqtools/Makefile
385561 biology/seqtools/distinfo
385561 biology/seqtools/pkg-plist
biology/seqtools: 4.33 -> 4.34.1

- Added functionality to shift-select a range of coordinates,
  and copy the reference/match sequence for that range.
- DNA search now highlights the resultant range of coordinates.
- Added a splitter bar to allow the variations track to be resized.
- Dotter
  Fix a crash pressing Esc on an undocked alignment or greyramp tool.
- All
  Code reorganisation: the codebase is now in C++ rather than C,
  and a new module 'gbtools' has been created for generic
  utility functions.
Wed, 15 Oct 2014
[ 18:46 pi ] Original commit 
370943 biology/seqtools/Makefile
370943 biology/seqtools/distinfo
370943 biology/seqtools/pkg-plist
biology/seqtools: 4.28 -> 4.29

- Blixem
  o Added the facility to run Dotter on an ad-hoc sequence (RT:408836).
  o Added the facility to run Dotter against a transcript.
- Dotter
  Minimise the greyramp tool to a simple contrast slider. Use
  Ctrl-G to toggle between this and the full greyramp tool.
- Belvu
  Fix a bug with tree bootstrapping in Belvu.
Wed, 12 Feb 2014
[ 14:03 mat ] Original commit 
343923 biology/seqtools/Makefile
343923 biology/seqtools/pkg-plist
343923 databases/dbtool/Makefile
343923 databases/dbtool/pkg-plist
343923 games/gnubg/Makefile
343923 games/gnubg/pkg-plist
343923 games/pengpong/Makefile
343923 games/pengpong/pkg-plist
343923 games/seabattle/Makefile
343923 games/seabattle/pkg-plist

(Only the first 10 of 20 ports in this commit are shown above. View all ports for this commit)
Fix old makeplist bug.

Pointy hat to:	people who blindly use makeplist
Sponsored by:	Absolight
Sun, 10 Nov 2013
[ 11:01 wg ] Original commit 
333374 MOVED
333374 biology/Makefile
333374 biology/dotter
333374 biology/seqtools
333374 biology/seqtools/Makefile
333374 biology/seqtools/distinfo
333374 biology/seqtools/pkg-descr
333374 biology/seqtools/pkg-plist
biology/seqtools: Tools for visualising sequence alignments

Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.

Belvu is a multiple sequence alignment viewer and phylogenetic tool.

Dotter is a graphical dot-matrix program for detailed comparison
of two sequences.


PR:		ports/183801
Submitted by:	Kurt Jaeger <fbsd-ports>

Number of commits found: 4

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