FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us

non port: head/biology/seqtools/pkg-plist

Number of commits found: 4

Wed, 6 May 2015
[ 20:30 pi ] Original commit 
385561 biology/seqtools/Makefile
385561 biology/seqtools/distinfo
385561 biology/seqtools/pkg-plist
biology/seqtools: 4.33 -> 4.34.1

- Added functionality to shift-select a range of coordinates,
  and copy the reference/match sequence for that range.
- DNA search now highlights the resultant range of coordinates.
- Added a splitter bar to allow the variations track to be resized.
- Dotter
  Fix a crash pressing Esc on an undocked alignment or greyramp tool.
- All
  Code reorganisation: the codebase is now in C++ rather than C,
  and a new module 'gbtools' has been created for generic
  utility functions.
Wed, 15 Oct 2014
[ 18:46 pi ] Original commit 
370943 biology/seqtools/Makefile
370943 biology/seqtools/distinfo
370943 biology/seqtools/pkg-plist
biology/seqtools: 4.28 -> 4.29

- Blixem
  o Added the facility to run Dotter on an ad-hoc sequence (RT:408836).
  o Added the facility to run Dotter against a transcript.
- Dotter
  Minimise the greyramp tool to a simple contrast slider. Use
  Ctrl-G to toggle between this and the full greyramp tool.
- Belvu
  Fix a bug with tree bootstrapping in Belvu.
Wed, 12 Feb 2014
[ 14:03 mat ] Original commit 
343923 biology/seqtools/Makefile
343923 biology/seqtools/pkg-plist
343923 databases/dbtool/Makefile
343923 databases/dbtool/pkg-plist
343923 games/gnubg/Makefile
343923 games/gnubg/pkg-plist
343923 games/pengpong/Makefile
343923 games/pengpong/pkg-plist
343923 games/seabattle/Makefile
343923 games/seabattle/pkg-plist

(Only the first 10 of 20 ports in this commit are shown above. View all ports for this commit)
Fix old makeplist bug.

Pointy hat to:	people who blindly use makeplist
Sponsored by:	Absolight
Sun, 10 Nov 2013
[ 11:01 wg ] Original commit 
333374 MOVED
333374 biology/Makefile
333374 biology/dotter
333374 biology/seqtools
333374 biology/seqtools/Makefile
333374 biology/seqtools/distinfo
333374 biology/seqtools/pkg-descr
333374 biology/seqtools/pkg-plist
biology/seqtools: Tools for visualising sequence alignments

Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.

Belvu is a multiple sequence alignment viewer and phylogenetic tool.

Dotter is a graphical dot-matrix program for detailed comparison
of two sequences.


PR:		ports/183801
Submitted by:	Kurt Jaeger <fbsd-ports>

Number of commits found: 4

User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
How big is it?
The latest upgrade!

Enter Keywords:

Latest Vulnerabilities
dnscrypt-proxyFeb 10
linux-c6-flashplugin11Feb 10
linux-f10-flashplugin11Feb 10
chromiumFeb 09
graphite2*Feb 09
php55Feb 09
php56Feb 09
py-imagingFeb 09
py-imagingFeb 09
py-pillowFeb 09
py-pillowFeb 09
py-pillowFeb 09
py-pillowFeb 09
xymon-serverFeb 09
ffmpegFeb 06

32 vulnerabilities affecting 82 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Deleted ports
Sanity Test Failures

NEW Graphs (Javascript)

Calculated hourly:
Port count 25716
Broken 361
Deprecated 147
Ignore 636
Forbidden 0
Restricted 206
Vulnerable 60
Expired 69
Set to expire 128
Interactive 0
new 24 hours 2
new 48 hours6
new 7 days25
new fortnight53
new month127

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.