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Port details
spdbv Deep View Swiss-PdbViewer is a Protein viewer and analysis tool
3.7_1 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Deprecated DEPRECATED: "is incompatible with new x11-toolkits/linux-openmotif 2.2.4"
Ignore IGNORE: is incompatible with new x11-toolkits/linux-openmotif 2.2.4
Maintainer: chuynh@biolateral.com.au search for ports maintained by this maintainer
Port Added: 02 Apr 2002 16:19:11
License: not specified in port
Swiss-PdbViewer is an application that provides a user friendly interface
allowing to analyse several proteins at the same time. The proteins can be
superimposed in order to deduce structural alignments and compare their
active sites or any other relevant parts. Amino acid mutations, H-bonds,
angles and distances between atoms are easy to obtain thanks to the
intuitive graphic and menu interface. 

Moreover, Swiss-PdbViewer is tightly linked to Swiss-Model, an automated
homology modelling server developped at Glaxo Welcome Experimental Research
in Geneva. Working with these two programs greatly reduces the amount of work
necessary to generate models, as it is possible to thread a protein primary
sequence onto a 3D template and get an immediate feedback of how well the
threaded protein will be accepted by the reference structure before
submitting a request to build missing loops and refine sidechain packing.

Swiss-PdbViewer can also read electron density maps, and provides various
tools to build into the density. In addition, various modelling tools are
integrated and command files for popular energy minimisation packages can be
generated.

Finally, as a special bonus, POV-Ray scenes can be generated from the
current view in order to make stunning ray-traced quality images.

WWW:  http://www.expasy.ch/spdbv/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Runtime dependencies:
  1. /compat/linux/nonexistentx/lib/libMesaGL.so.3 : graphics/linux_mesa3
  2. /compat/linux/nonexistentx/lib/libXm.so.3 : x11-toolkits/linux-openmotif
  3. /compat/linux/etc/redhat-release : emulators/linux_base
There are no ports dependent upon this port

No installation instructions: this port has been deleted.

The package name of this deleted port was: spdbv


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://au.expasy.org/spdbv/program/
  3. http://ca.expasy.org/spdbv/program/
  4. http://cn.expasy.org/spdbv/program/
  5. http://kr.expasy.org/spdbv/program/
  6. http://tw.expasy.org/spdbv/program/
  7. http://www.expasy.org/spdbv/program/
  8. http://www.genebee.msu.ru/spdbv/program/
  9. http://www.usm.maine.edu/spdbv/program/

Number of commits found: 12

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
18 Feb 2005 23:44:49
Original commit files touched by this commit  3.7_1
kris search for other commits by this committer
As previously announced, remove ports that have reached their expiry date,
and the handful of ports that depended on them.
18 Dec 2004 23:02:35
Original commit files touched by this commit  3.7_1
kris search for other commits by this committer
This port is scheduled to be removed on 2005-02-18 if it is still
broken at that time, and a fix has not been submitted to GNATS.
17 Dec 2004 08:01:22
Original commit files touched by this commit  3.7_1
linimon search for other commits by this committer
Clean up wording of IGNORE output.
17 Dec 2004 07:43:11
Original commit files touched by this commit  3.7_1
linimon search for other commits by this committer
Unquote the IGNORE string.
17 Dec 2004 06:43:46
Original commit files touched by this commit  3.7_1
linimon search for other commits by this committer
With portmgr hat on, switch from BROKEN to ignore.  It does indeed build.
01 Nov 2004 22:26:55
Original commit files touched by this commit  3.7_1
mezz search for other commits by this committer
Correct a typo: s/linux-opera/linux-openmotif/g.
01 Nov 2004 21:25:10
Original commit files touched by this commit  3.7_1
mezz search for other commits by this committer
Chase the linux-openmotif shared library version and mark biology/spdbv as
broke, I get no respone from the maintainer since Oct 22, 2004. The
www/linux-opera works fine with new linux-openmotif. Also, bump PORTREVISION.

To fix or update for biology/spdbv is welcome, I shall commit them if I get
patch(es) in my Inbox.
22 May 2004 13:19:02
Original commit files touched by this commit  3.7
pav search for other commits by this committer
- Remove long time unresponsive MASTER_SITE

PR:             ports/67016
Submitted by:   Roman Neuhauser <neuhauser@chello.cz>
31 Mar 2004 03:12:58
Original commit files touched by this commit  3.7
trevor search for other commits by this committer
SIZEify (maintainer timeout)
21 Feb 2003 11:01:38
Original commit files touched by this commit  3.7
knu search for other commits by this committer
De-pkg-comment.
02 Jan 2003 03:57:58
Original commit files touched by this commit  3.7
ijliao search for other commits by this committer
upgrade to 3.7

PR:             44957
Submitted by:   maintainer
02 Apr 2002 16:18:53
Original commit files touched by this commit  37b2
dinoex search for other commits by this committer
Swiss-PdbViewer is an application that provides a user friendly interface
allowing to analyse several proteins at the same time. The proteins can be
superimposed in order to deduce structural alignments and compare their
active sites or any other relevant parts. Amino acid mutations, H-bonds,
angles and distances between atoms are easy to obtain thanks to the
intuitive graphic and menu interface.

Moreover, Swiss-PdbViewer is tightly linked to Swiss-Model, an automated
homology modelling server developped at Glaxo Welcome Experimental Research
in Geneva. Working with these two programs greatly reduces the amount of work
necessary to generate models, as it is possible to thread a protein primary
sequence onto a 3D template and get an immediate feedback of how well the
threaded protein will be accepted by the reference structure before
submitting a request to build missing loops and refine sidechain packing.
(Only the first 15 lines of the commit message are shown above View all of this commit message)

Number of commits found: 12

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