FreshPorts -- biology/ssaha

2c81 FreshPorts -- biology/ssaha

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Port details

ssaha 3.1c_1 biology =0

Very fast matching and alignment of DNA sequences

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 21 Jun 2008 00:02:14
License: not specified in port

SSAHA is a software tool for very fast matching and alignment of DNA
sequences. It stands for Sequence Search and Alignment by Hashing
Algorithm. It achieves its fast search speed by converting sequence
information into a `hash table' data structure, which can then be
searched very rapidly for matches.

SSAHA: a fast search method for large DNA databases (2001).
Ning Z, Cox AJ, Mullikin JC. Genome Res. 11: 1725-9. 
PMID: 11591649

WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/

SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:

devel/gmake

There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/ssaha/ && make install clean
To add the package: pkg_add -r ssaha

Configuration Options

     No options to configure

Master Sites:

Number of commits found: 4

Commit History - (may be incomplete: see SVNWeb link above for full details)
Date	By	Description
01 Oct 2012 14:45:17 3.1c_1	tabthorpe	- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54 3.1c_1	miwi	- Get Rid MD5 support
21 Jun 2008 02:46:21 3.1c_1	lippe	- Fix plist files installation. - Bump PORTREVISION. Reported by: QA Tindy Approved by: gabor (mentor, implicit)
21 Jun 2008 00:01:57 3.1c	lippe	SSAHA is a software tool for very fast matching and alignment of DNA sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)

Number of commits found: 4

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