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Port details
ssaha Very fast matching and alignment of DNA sequences
3.1c_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 21 Jun 2008 00:02:14
License: not specified in port
SSAHA is a software tool for very fast matching and alignment of DNA
sequences. It stands for Sequence Search and Alignment by Hashing
Algorithm. It achieves its fast search speed by converting sequence
information into a `hash table' data structure, which can then be
searched very rapidly for matches.

SSAHA: a fast search method for large DNA databases (2001).
Ning Z, Cox AJ, Mullikin JC. Genome Res. 11: 1725-9.
PMID: 11591649

WWW: http://www.sanger.ac.uk/resources/software/ssaha/
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/ssaha/ && make install clean
To add the package: pkg install ssaha

PKGNAME: ssaha

distinfo:

SHA256 (ssaha_v31c.tar.gz) = 63fa38ccd2725db6ba10881f8cc94d899afd2eba9c2f6436223d9284c5abfced
SIZE (ssaha_v31c.tar.gz) = 251510


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake
  2. gcc49 : lang/gcc
  3. as : devel/binutils
Runtime dependencies:
  1. gcc49 : lang/gcc
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
gmake

Master Sites:
  1. ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha/

Number of commits found: 11

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
20 Nov 2016 09:38:09
Original commit files touched by this commit  3.1c_3
Revision:426566
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
19 May 2016 10:21:25
Original commit files touched by this commit  3.1c_2
Revision:415498
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
20 Dec 2014 17:27:09
Original commit files touched by this commit  3.1c_2
Revision:375014
bapt search for other commits by this committer
Cleanup plist
09 Mar 2014 09:39:50
Original commit files touched by this commit  3.1c_2
Revision:347560
rene search for other commits by this committer
biology/ssaha: undeprecate, this port fetches and builds fine.

Submitted by:	Kurt Jaeger via private mail.
07 Feb 2014 18:50:30
Original commit files touched by this commit  3.1c_2
Revision:343287
bapt search for other commits by this committer
Deprecate ports unmaintained for which distillator is not able to find public
distfiles

Reported by:	distilator
25 Jan 2014 16:48:06
Original commit files touched by this commit  3.1c_2
Revision:341053
miwi search for other commits by this committer
- Fix build on -current
- Update MASTER_SITES and WWW: line
- Support CXX/CXXFLAGS properly
- Support PLIST_FILES
- Stage support

PR:		184852
Submitted by:	Ports Fury
20 Sep 2013 15:55:44
Original commit files touched by this commit  3.1c_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
01 Oct 2012 14:45:17
Original commit files touched by this commit  3.1c_1
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54
Original commit files touched by this commit  3.1c_1
miwi search for other commits by this committer
- Get Rid MD5 support
21 Jun 2008 02:46:21
Original commit files touched by this commit  3.1c_1
lippe search for other commits by this committer
- Fix plist files installation.
- Bump PORTREVISION.

Reported by:    QA Tindy
Approved by:    gabor (mentor, implicit)
21 Jun 2008 00:01:57
Original commit files touched by this commit  3.1c
lippe search for other commits by this committer
SSAHA is a software tool for very fast matching and alignment of DNA
sequences. It stands for Sequence Search and Alignment by Hashing
Algorithm. It achieves its fast search speed by converting sequence
information into a `hash table' data structure, which can then be
searched very rapidly for matches.

WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/

PR:             ports/124525
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:    gabor (mentor, implicit)

Number of commits found: 11

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