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non port: biology/t_coffee/Makefile

Number of commits found: 38

Saturday, 4 Apr 2020
20:51 antoine search for other commits by this committer
Deprecate ports broken for more than 6 months
Original commitRevision:530719 
Wednesday, 6 Nov 2019
12:48 antoine search for other commits by this committer
Mark a few ports BROKEN, unfetchable
Original commitRevision:516880 
Friday, 26 Jul 2019
20:46 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Original commitRevision:507372 
Monday, 22 Apr 2019
13:16 gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
Original commitRevision:499638 
Wednesday, 12 Dec 2018
01:35 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Original commitRevision:487272 
Sunday, 29 Jul 2018
22:18 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
Original commitRevision:475857 
Saturday, 10 Mar 2018
17:46 gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Original commitRevision:464084 
Sunday, 10 Sep 2017
20:55 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
Original commitRevision:449591 
Saturday, 1 Apr 2017
15:23 gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
Original commitRevision:437439 
Wednesday, 7 Dec 2016
13:24 gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
Original commitRevision:428057 
Friday, 1 Apr 2016
13:29 mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:412344 
Thursday, 14 May 2015
10:15 mat search for other commits by this committer
MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:386312 
Wednesday, 10 Sep 2014
20:50 gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Original commitRevision:367888 
Monday, 9 Jun 2014
11:21 olgeni search for other commits by this committer
Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. Categories A-C.

CR:		D196
Approved by:	portmgr (bapt)
Original commitRevision:357139 
Monday, 10 Mar 2014
20:55 gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Original commitRevision:347809 
Wednesday, 18 Dec 2013
17:24 tijl search for other commits by this committer
USES=fortran, staging.
Original commitRevision:336851 
Saturday, 26 Oct 2013
00:52 gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)
Original commitRevision:331644 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Wednesday, 14 Aug 2013
22:35 ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
Original commitRevision:324744 
Monday, 14 Jan 2013
08:04 araujo search for other commits by this committer
- Update to 9.03.

PR:		ports/172499
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Original commitRevision:310361 
Monday, 1 Oct 2012
14:45 tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
Original commitRevision:305130 
Sunday, 10 Jun 2012
18:42 swills search for other commits by this committer
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
  RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:             ports/168208
Approved by:    portmgr (miwi)
Original commit
Tuesday, 9 Sep 2008
13:43 gahr search for other commits by this committer
- Respect PORTDOCS/PORTEXAMPLES

Reported by:    QA Tindie
Approved by:    portmgr
Original commit
Saturday, 5 Apr 2008
10:47 rafan search for other commits by this committer
- Update to 5.68
- Remove gcc version restriction

PR:             ports/122435
Submitted by:   Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
Original commit
Wednesday, 2 May 2007
07:15 edwin search for other commits by this committer
[patch] cleanup non-supported FreeBSD versions

PR:             ports/111728
Submitted by:   Edwin Groothuis <edwin@mavetju.org>
Approved by:    maintainer timeout
Original commit
Friday, 9 Mar 2007
11:26 miwi search for other commits by this committer
- Update to 4.96

PR:             110080
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Monday, 22 Jan 2007
23:22 rafan search for other commits by this committer
- Project moves to a new home. Change MASTER_SITES and WWW

PR:             ports/108214
Submitted by:   Thomas Abthorpe <thomas at goodking.ca>
Approved by:    Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
Original commit
Friday, 10 Feb 2006
09:45 lawrance search for other commits by this committer
Update to 3.27.
Use GCC 3.3 on systems with 3.4, due to an internal compiler error.

PR:             ports/93050
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Tuesday, 6 Dec 2005
15:10 tdb search for other commits by this committer
- Update to 3.18 to make fetchable again
- Mark broken on 6.x upwards

PR:             89977
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    clement (mentor)
Original commit
Friday, 28 Oct 2005
06:32 kris search for other commits by this committer
BROKEN: Unfetchable
Original commit
Tuesday, 11 Oct 2005
20:47 sem search for other commits by this committer
Forced commit to note the port was updated to 3.14 not 3.13
Original commit
20:44 sem search for other commits by this committer
- Update to 3.13. It fixes fetching.

PR:             ports/87264
Submitted by:   maintainer
Original commit
Thursday, 25 Nov 2004
23:03 sem search for other commits by this committer
- Update to 2.03
- Pass maintainership to submitter

PR:             ports/74332
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
Original commit
Saturday, 20 Nov 2004
08:09 linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
Original commit
Thursday, 22 Jan 2004
12:18 trevor search for other commits by this committer
Use the CPIO macro defined in bsd.port.mk.
Original commit
Thursday, 13 Nov 2003
14:45 trevor search for other commits by this committer
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
Original commit
Friday, 7 Mar 2003
05:56 ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Original commit
Friday, 25 Jan 2002
14:58 wjv search for other commits by this committer
Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.    
Original commit

Number of commits found: 38