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Port details
tinker General purpose molecular modelling package
6.2.6_6 biology on this many watch lists=1 search for ports that depend on this port
Restricted RESTRICTED: author requests no distribution except from his FTP site

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: tinker


Tinker is a set of small programs for doing general purpose molecular
modeling calculations. Tools are included for energy minimizations,
geometry calculations, simulated annealing, molecular dynamics, and
molecular analysis calculations. Tools for converting coordinate sets
are also provided.  Tinker employs several force fields and minimization
techniques.

This port sets the maxatm value to 2500 atoms.  This should be
sufficient for most molecular systems.  Should you need to work with
larger systems you can set the maxatm parameter in the sizes.i file
located in the tinker/source directory and recompile.  Note that if it
is set too large that tinker programs will abort and core dump.

For more information about Tinker see:

WWW: http://dasher.wustl.edu/tinker/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Build:
  1. lang/gcc
  2. devel/binutils
Required To Run:
  1. lang/gcc
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/tinker/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


Configuration Options
===> The following configuration options are available for tinker-6.2.6_6:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
     OPTIMIZED_FFLAGS=off: compilation optimizations
===> Use 'make config' to modify these settings

Master Sites:
  1. http://dasher.wustl.edu/tinker/downloads/
  2. http://distcache.FreeBSD.org/ports-distfiles/

Number of commits found: 56

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
20 Oct 2014 07:10:48
Original commit files touched by this commit  6.2.6_6
Revision:371237
bapt search for other commits by this committer
Cleanup plist
10 Sep 2014 20:50:37
Original commit files touched by this commit  6.2.6_6
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
22 Apr 2014 19:28:18
Original commit files touched by this commit  6.2.6_5
Revision:351875
riggs search for other commits by this committer
- Un-break fetch stage: the name scheme of the source tarballs has changed
- Add LICENSE*
- Remove conflict with hunspell:
  - Rename the 'analyze' binary to 'analyze_t'
  - put a note in pkg-message.in
- Pet portlint

PR:		ports/187569
Submitted by:	Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
Approved by:	thierry (mentor)
MFH:	2014Q2
10 Mar 2014 20:55:22
Original commit files touched by this commit  6.2.06_4
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
18 Dec 2013 18:27:05
Original commit files touched by this commit  6.2.06_3
Revision:336854
tijl search for other commits by this committer
- biology/tinker: USES=fortran, staging.
- Add CONFLICTS_INSTALL between hunspell and tinker.
  Both install bin/analyze.
26 Oct 2013 00:52:36
Original commit files touched by this commit  6.2.06_2
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 15:55:44
Original commit files touched by this commit  6.2.06_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
18 Aug 2013 11:38:35
Original commit files touched by this commit  6.2.06_1
Revision:324901
marino search for other commits by this committer
biology/tinker: Regenerate distinfo to unbreak fetch

Apparently the distfile was rerolled.  The sizes of the file are only a few
bytes apart.  Since the master site never changed, it's reasonable just to
regenerate the distinfo and bump the PORTREVISION.

PR:		180664
Approved by:	bapt/culot (mentors, implicit)
14 Aug 2013 22:35:54
Refresh Original commit files touched by this commit
Revision:324744  Sanity Test Failure
ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
15 Jul 2013 14:50:22
Original commit files touched by this commit  6.2.06
Revision:323046
miwi search for other commits by this committer
- Update to 6.2.06

PR:		180518
Submitted by:	Ports Fury
29 May 2013 05:25:49
Original commit files touched by this commit  6.2.05
Revision:319343
miwi search for other commits by this committer
- Update to 6.2.05

PR:		179061
Submitted by:	Ports Fury
21 May 2013 08:19:03
Original commit files touched by this commit  6.2.04
Revision:318658
miwi search for other commits by this committer
- Update to 6.2.04

PR:		178590
Submitted by:	Ports Fury
29 Apr 2013 14:23:03
Original commit files touched by this commit  6.2.02
Revision:316821
miwi search for other commits by this committer
- Update to 6.2.02

PR:		178031
Submitted by:	Ports Fury
24 Mar 2013 16:13:57
Original commit files touched by this commit  6.2.01
Revision:315140
miwi search for other commits by this committer
- Update to 6.2.01

PR:		177261
Submitted by:	ports fury
01 Dec 2012 00:00:43
Original commit files touched by this commit  6.1.01
Revision:308054
sperber search for other commits by this committer
- Update to version 6.1.01
- Add MAKE_JOBS_SAFE
- Convert to optionsng
- Trim Makefile header

PR:           ports/171971
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
10 Oct 2011 20:17:22
Original commit files touched by this commit  5.1.09
pav search for other commits by this committer
- ${FFLAGS} might contain commas

Reported by:    pointyhat
31 Jan 2011 11:45:44
Original commit files touched by this commit  5.1.09
miwi search for other commits by this committer
- Update to 5.1.09

PR:             154359
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Feature safe:   yes
30 Oct 2010 23:51:30
Original commit files touched by this commit  4.2.20040908_5
rene search for other commits by this committer
- Unbreak by removing some old and adding some new master sites
- Bump PORTREVISION
PR:             ports/151733
Submitted by:   Chris Petrik [c.petrik.sosa gmail.com]
30 Sep 2010 08:53:18
Original commit files touched by this commit  4.2.20040908_4
erwin search for other commits by this committer
Mark BROKEN: does not fetch.
13 Sep 2009 00:08:01
Original commit files touched by this commit  4.2.20040908_4
gerald search for other commits by this committer
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
07 Jan 2009 16:34:27
Original commit files touched by this commit  4.2.20040908_3
gerald search for other commits by this committer
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
19 Apr 2008 17:56:05
Original commit files touched by this commit  4.2.20040908_2
  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
12 Jul 2007 06:49:37
Original commit files touched by this commit  4.2.20040908_1
maho search for other commits by this committer
Now we use USE_FORTRAN=yes to use FORTRAN compiler.
25 May 2007 01:41:55
Original commit files touched by this commit  4.2.20040908_1
edwin search for other commits by this committer
swap MASTER_SITES to improve fetchiness on pointyhat which is blocked from
dasher.wustl.edu
25 May 2007 01:00:15
Original commit files touched by this commit  4.2.20040908_1
kris search for other commits by this committer
BROKEN: Unfetchable
21 Apr 2007 15:26:54
Original commit files touched by this commit  4.2.20040908_1
miwi search for other commits by this committer
- Unbreak
- Add backup MASTER_SITES

PR:             111963
Submitted by:   Jason Harris <jharris@widomaker.com>
20 Apr 2007 08:03:13
Original commit files touched by this commit  4.2.20040908_1
kris search for other commits by this committer
BROKEN: Unfetchable
16 Mar 2007 21:16:36
Original commit files touched by this commit  4.2.20040908_1
gabor search for other commits by this committer
- MASTER_SITE is back, remove BROKEN

PR:             ports/109954
Submitted by:   Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
27 Feb 2007 04:55:59
Original commit files touched by this commit  4.2.20040908_1
kris search for other commits by this committer
BROKEN: Unfetchable
12 Jan 2007 12:21:21
Original commit files touched by this commit  4.2.20040908_1
maho search for other commits by this committer
* Migrate to gfortran.
* Bump port revision.
03 May 2006 23:26:35
Original commit files touched by this commit  4.2.20040908
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
24 Nov 2005 00:04:00
Original commit files touched by this commit  4.2.20040908
pav search for other commits by this committer
- Add SHA256
25 Sep 2004 08:06:08
Original commit files touched by this commit  4.2.20040908
thierry search for other commits by this committer
Upgrade to latest revision to make fetchable again.

Approved by:    portmgr (marcus)
19 Aug 2004 22:24:21
Original commit files touched by this commit  4.2.20040819
thierry search for other commits by this committer
- Unbreak by upgrading to 4.2;

- Use DIST_SUBDIR because tarball is not versioned;

- Add sysdate to PORTVERSION to handle minor revisions;

- Do some cleaning.
23 Jul 2004 20:31:09
Original commit files touched by this commit  4.1
anholt search for other commits by this committer
Use X_IMAKE_PORT instead of dist-specific imake dependencies.  While here,
make the BROKEN message a little more informative.
03 Jul 2004 09:53:15
Original commit files touched by this commit  4.1
kris search for other commits by this committer
BROKEN: Checksum mismatch
10 Apr 2004 17:26:55
Original commit files touched by this commit  4.1
trevor search for other commits by this committer
Tidy up whitespace.
21 Nov 2003 22:28:34
Original commit files touched by this commit  4.1
pav search for other commits by this committer
- Update checksum again, seems author removes .ps version of documentation
  from tarball
- Unmark broken, it builds for me just fine

Approved by:    adamw (mentor)
22 Oct 2003 09:29:55
Original commit files touched by this commit  4.1
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
16 Oct 2003 00:58:05
Original commit files touched by this commit  4.1
linimon search for other commits by this committer
Forced commit to add rationale.  (Note: this port was previously
broken due to a bad checksum; the initial intent of the update
was to try to fix only that.  However, the new revision fails
as well, but this led to my being sloppy with the checkin.
As Maxwell Smart said, "Sorry about that, Chief.")

New distfile 9/13.  "Changes from TINKER 4.0 include some new force
field parameter sets, improvements to rigid body dynamics, a
Nose-Hoover thermostat, and numerous minor additions and bug fixes."

However, the compilation fails in sockets.c with an undefined
ref to <jni.h>.  This is part of: "an interface between TINKER Fortran
code and FFE Java objects used for socket based communication."

Some interested party is going to have to take up this one, I'm
afraid, as I have no idea what is involved.

Reminded by: kris
15 Oct 2003 23:56:43
Original commit files touched by this commit  4.1
linimon search for other commits by this committer
Fixes the checksum problem, but doesn't fix the port; adds a BROKEN
line about how it fails.  Some other interested person will have
to take it from here.

PR:             56882
25 Jul 2003 22:30:56
Original commit files touched by this commit  4.0
maho search for other commits by this committer
Some clean-up.
a) ECHO-> ECHO_CMD
b) place of WITH_OPTIMIZED_FLAGS seems to be wrong.
c) fix errors reported from freshports.org
25 Jul 2003 21:19:09
Original commit files touched by this commit  4.0
maho search for other commits by this committer
Duplicated the `pre-extract:' and `post-build:'

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  myself
25 Jul 2003 07:19:40
Original commit files touched by this commit  4.0
maho search for other commits by this committer
a) Some corrupts with Makefile and pkg-plist.
b) forgot to notice that drop maintainership to ports@

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  myself
25 Jul 2003 02:48:05
Original commit files touched by this commit  4.0
maho search for other commits by this committer
a) Forgot to update distinfo 52498
b) added LEGAL. author requests no distribution
   except from his FTP site
c) clean-ups for compiler optimization

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  maho; partially :)
19 Jul 2003 03:48:44
Original commit files touched by this commit  4.0
maho search for other commits by this committer
Maintainer update of biology/tinker port to version 4.0.

PR:             52498
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
30 Mar 2003 06:43:14
Original commit files touched by this commit  3.9_1
edwin search for other commits by this committer
Update the biology/tinker Makefile so it builds on -current

PR:             ports/50371
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
21 Feb 2003 11:01:38
Original commit files touched by this commit  3.9_1
knu search for other commits by this committer
De-pkg-comment.
19 Jan 2002 15:15:17
files touched by this commit
ijliao search for other commits by this committer
Upgrade tinker to the latest revision    
13 Sep 2001 04:50:40
files touched by this commit
lioux search for other commits by this committer
style fix: un"echo" commands    
13 Sep 2001 02:13:52
files touched by this commit
lioux search for other commits by this committer
Update to 3.9    
08 Jul 2001 19:15:34
files touched by this commit
ijliao search for other commits by this committer
Add NOPORTDOCS support to pkg-plist    
20 Apr 2001 15:01:37
files touched by this commit
olgeni search for other commits by this committer
Update distfile checksum (PORTREVISION bumped)    
24 Jan 2001 17:58:44
files touched by this commit
ijliao search for other commits by this committer
update from 3.7 to 3.8    
08 Oct 2000 00:23:30
files touched by this commit
asami search for other commits by this committer
Convert category biology to new layout.  
09 Jun 2000 05:59:14
files touched by this commit
will search for other commits by this committer
Clean up this port so that it installs stuff in a more proper location   as per
hier(7) and Porter's Handbook.    

Number of commits found: 56

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