velvet 1.1.04 biology =0

Sequence assembler for very short reads
Maintained by: mzaki@m.u-tokyo.ac.jp
Port Added: 07 Nov 2009 01:24:24
License: not specified in port

---

---

Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).

Citation:

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)

WWW: http://www.ebi.ac.uk/~zerbino/velvet/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

---

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: lang/python27, devel/gmake
Required To Run: lang/python27, lang/perl5.8
There are no ports dependent upon this port

---

To install the port: cd /usr/ports/biology/velvet/ && make install clean
To add the package: pkg_add -r velvet

---

Configuration Options

     No options to configure

---

Master Sites:

http://www.ebi.ac.uk/~zerbino/velvet/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Update to 1.1.04

PR:             ports/157527
Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
Approved by:    bapt (mentor)

- Get Rid MD5 support

Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).

Citation:

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)

WWW: http://www.ebi.ac.uk/~zerbino/velvet/

PR:             140147
Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities