FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

I am looking for an LTO tape library. Do you have one to spare?
non port: head/biology/velvet/Makefile
SVNWeb

Number of commits found: 8

Thu, 13 Mar 2014
[ 07:41 miwi ] Original commit 
348042 biology/garlic/Makefile
348042 biology/mafft/Makefile
348042 biology/mopac/Makefile
348042 biology/mummer/Makefile
348042 biology/muscle/Makefile
348042 biology/paml/Makefile
348042 biology/phylip/Makefile
348042 biology/pymol/Makefile
348042 biology/velvet/Makefile
348042 biology/xmolwt/Makefile
- Convert USE_GMAKE to USES
Fri, 21 Feb 2014
[ 13:35 ehaupt ] Original commit 
345397 biology/biojava/Makefile
345397 biology/consed/Makefile
345397 biology/finchtv/Makefile
345397 biology/genpak/Makefile
345397 biology/mummer/Makefile
345397 biology/njplot/Makefile
345397 biology/p5-bioperl-run/Makefile
345397 biology/p5-bioperl/Makefile
345397 biology/paml/Makefile
345397 biology/velvet/Makefile
Remove trailing whitespaces from category biology
Mon, 10 Feb 2014
[ 13:54 ehaupt ] Original commit 
343634 archivers/aolserver-nszlib/Makefile
343634 archivers/dact/Makefile
343634 archivers/freeze/Makefile
343634 archivers/javatar/Makefile
343634 archivers/lha-ac/Makefile
343634 archivers/libpar2/Makefile
343634 archivers/lzo2/Makefile
343634 archivers/makeself/Makefile
343634 archivers/py-lzma/Makefile
343634 archivers/ruby-libarchive/Makefile

(Only the first 10 of 581 ports in this commit are shown above. View all ports for this commit)
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit 
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sat, 7 Sep 2013
[ 07:44 az ] Original commit 
326575 biology/consed/Makefile
326575 biology/p5-Bio-ASN1-EntrezGene/Makefile
326575 biology/p5-bioperl-run/Makefile
326575 biology/velvet/Makefile
326575 devel/p5-Config-YAML/Makefile
326575 devel/p5-MooseX-CompileTime-Traits/Makefile
326575 devel/p5-Sys-Cpu/Makefile
326575 sysutils/backupme/Makefile
326575 sysutils/p5-BSD-Sysctl/Makefile
326575 sysutils/p5-Filesys-DiskUsage/Makefile

(Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
- convert to the new perl5 framework

Approved by:	portmgr (bapt@, blanket)
Thu, 9 Jun 2011
[ 16:33 jlaffaye ] Original commit 
1.2 biology/velvet/Makefile
1.3 biology/velvet/distinfo
1.2 biology/velvet/files/patch-Makefile
1.2 biology/velvet/files/patch-contrib-VelvetOptimiser-VelvetOptimiser.pl
1.2 biology/velvet/files/patch-src-run.c
Update to 1.1.04

PR:             ports/157527
Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
Approved by:    bapt (mentor)
Sat, 7 Nov 2009
[ 01:23 amdmi3 ] Original commit 
1.115 biology/Makefile
1.1 biology/velvet/Makefile
1.1 biology/velvet/distinfo
1.1 biology/velvet/files/patch-Makefile
1.1 biology/velvet/files/patch-contrib-VelvetOptimiser-VelvetOptimiser.pl
1.1 biology/velvet/files/patch-src-run.c
1.1 biology/velvet/pkg-descr
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).

Citation:

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)

WWW: http://www.ebi.ac.uk/~zerbino/velvet/

PR:             140147
Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>

Number of commits found: 8

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
fileAug 21
py-djangoAug 21
py-django-develAug 21
py-django14Aug 21
py-django15Aug 21
php53Aug 18
phpmyadminAug 17
chromiumAug 13
serfAug 11
subversionAug 11
subversion17Aug 11
nginxAug 09
nginx-develAug 09
mingw32-opensslAug 06
opensslAug 06

8 vulnerabilities affecting 14 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24462
Broken 223
Deprecated 803
Ignore 567
Forbidden 36
Restricted 261
No CDROM 101
Vulnerable 23
Expired 0
Set to expire 797
Interactive 0
new 24 hours 4
new 48 hours5
new 7 days38
new fortnight145
new month217

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.