FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

non port: head/biology/velvet/Makefile
SVNWeb

Number of commits found: 15

Mon, 19 Jan 2015
[ 17:43 marino ] Original commit   Revision:377443
377443 biology/velvet/Makefile
377443 graphics/apngasm/Makefile
377443 graphics/xaos/Makefile
377443 news/slrn/Makefile
Designatate 4 ports as unsafe for parallel building

All had similar errors that it couldn't find something during the build,
yet built on a subsequent pass with no adjustments.  Most I've seen before
on previous bulk runs.
Wed, 26 Nov 2014
[ 13:08 mat ] Original commit   Revision:373448
373448 CHANGES
373448 Mk/Uses/perl5.mk
373448 Mk/bsd.default-versions.mk
373448 Mk/bsd.port.mk
373448 UPDATING
373448 archivers/dpkg/Makefile
373448 archivers/p5-Archive-Any-Lite/Makefile
373448 archivers/p5-Archive-Any-Lite/pkg-plist
373448 archivers/p5-Archive-Any-Plugin-Rar/Makefile
373448 archivers/p5-Archive-Any-Plugin-Rar/pkg-plist

(Only the first 10 of 10077 ports in this commit are shown above. View all ports for this commit)
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sun, 19 Oct 2014
[ 07:38 mva ] Original commit   Revision:371171
371171 benchmarks/pybench/Makefile
371171 benchmarks/tsung/Makefile
371171 biology/py-biopython/Makefile
371171 biology/pycogent/Makefile
371171 biology/pyfasta/Makefile
371171 biology/python-nexus/Makefile
371171 biology/seqan/Makefile
371171 biology/velvet/Makefile
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
Tue, 29 Jul 2014
[ 19:11 adamw ] Original commit   Revision:363374
363374 archivers/ha/Makefile
363374 archivers/unalz/Makefile
363374 astro/gpsman/Makefile
363374 audio/amrcoder/Makefile
363374 audio/chordpack/Makefile
363374 audio/cmt/Makefile
363374 audio/enscribe/Makefile
363374 audio/funktrackergold/Makefile
363374 audio/ladspa/Makefile
363374 audio/libconvolve/Makefile

(Only the first 10 of 436 ports in this commit are shown above. View all ports for this commit)
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
Fri, 20 Jun 2014
[ 12:54 rakuco ] Original commit   Revision:358567
358567 biology/velvet/Makefile
Fix shebang line in Perl and Python scripts.

PR:		191146
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
Tue, 17 Jun 2014
[ 21:39 rakuco ] Original commit   Revision:358183
358183 biology/velvet/Makefile
358183 biology/velvet/distinfo
358183 biology/velvet/files/patch-Makefile
Update to 1.2.10.

PR:		191129
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
Sun, 1 Jun 2014
[ 11:33 ohauer ] Original commit   Revision:356099
356099 biology/velvet/Makefile
- add stage support
Thu, 13 Mar 2014
[ 07:41 miwi ] Original commit   Revision:348042
348042 biology/garlic/Makefile
348042 biology/mafft/Makefile
348042 biology/mopac/Makefile
348042 biology/mummer/Makefile
348042 biology/muscle/Makefile
348042 biology/paml/Makefile
348042 biology/phylip/Makefile
348042 biology/pymol/Makefile
348042 biology/velvet/Makefile
348042 biology/xmolwt/Makefile
- Convert USE_GMAKE to USES
Fri, 21 Feb 2014
[ 13:35 ehaupt ] Original commit   Revision:345397
345397 biology/biojava/Makefile
345397 biology/consed/Makefile
345397 biology/finchtv/Makefile
345397 biology/genpak/Makefile
345397 biology/mummer/Makefile
345397 biology/njplot/Makefile
345397 biology/p5-bioperl-run/Makefile
345397 biology/p5-bioperl/Makefile
345397 biology/paml/Makefile
345397 biology/velvet/Makefile
Remove trailing whitespaces from category biology
Mon, 10 Feb 2014
[ 13:54 ehaupt ] Original commit   Revision:343634
343634 archivers/aolserver-nszlib/Makefile
343634 archivers/dact/Makefile
343634 archivers/freeze/Makefile
343634 archivers/javatar/Makefile
343634 archivers/lha-ac/Makefile
343634 archivers/libpar2/Makefile
343634 archivers/lzo2/Makefile
343634 archivers/makeself/Makefile
343634 archivers/py-lzma/Makefile
343634 archivers/ruby-libarchive/Makefile

(Only the first 10 of 581 ports in this commit are shown above. View all ports for this commit)
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit   Revision:338550
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sat, 7 Sep 2013
[ 07:44 az ] Original commit   Revision:326575
326575 biology/consed/Makefile
326575 biology/p5-Bio-ASN1-EntrezGene/Makefile
326575 biology/p5-bioperl-run/Makefile
326575 biology/velvet/Makefile
326575 devel/p5-Config-YAML/Makefile
326575 devel/p5-MooseX-CompileTime-Traits/Makefile
326575 devel/p5-Sys-Cpu/Makefile
326575 sysutils/backupme/Makefile
326575 sysutils/p5-BSD-Sysctl/Makefile
326575 sysutils/p5-Filesys-DiskUsage/Makefile

(Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
- convert to the new perl5 framework

Approved by:	portmgr (bapt@, blanket)
Thu, 9 Jun 2011
[ 16:33 jlaffaye ] Original commit 
1.2 biology/velvet/Makefile
1.3 biology/velvet/distinfo
1.2 biology/velvet/files/patch-Makefile
1.2 biology/velvet/files/patch-contrib-VelvetOptimiser-VelvetOptimiser.pl
1.2 biology/velvet/files/patch-src-run.c
Update to 1.1.04

PR:             ports/157527
Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
Approved by:    bapt (mentor)
Sat, 7 Nov 2009
[ 01:23 amdmi3 ] Original commit 
1.115 biology/Makefile
1.1 biology/velvet/Makefile
1.1 biology/velvet/distinfo
1.1 biology/velvet/files/patch-Makefile
1.1 biology/velvet/files/patch-contrib-VelvetOptimiser-VelvetOptimiser.pl
1.1 biology/velvet/files/patch-src-run.c
1.1 biology/velvet/pkg-descr
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).

Citation:

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)

WWW: http://www.ebi.ac.uk/~zerbino/velvet/

PR:             140147
Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>

Number of commits found: 15

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
apache24Dec 06
cryptoppDec 06
mod_http2-develDec 06
py-cryptography*Dec 06
qemu*Dec 06
qemu-devel*Dec 06
qemu-sbruno*Dec 06
chromiumDec 05
ImageMagickDec 04
ImageMagick-nox11Dec 04
ImageMagick7Dec 04
ImageMagick7Dec 04
ImageMagick7-nox11Dec 04
ImageMagick7-nox11Dec 04
py-pillowDec 04

35 vulnerabilities affecting 74 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 26964
Broken 313
Deprecated 177
Ignore 577
Forbidden 1
Restricted 214
No CDROM 82
Vulnerable 59
Expired 15
Set to expire 156
Interactive 0
new 24 hours 12
new 48 hours33
new 7 days82
new fortnight123
new month294

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.