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Port details
wise 2.4.1 biology on this many watch lists=0 search for ports that depend on this port
Intelligent algorithms for DNA searches

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Sep 2002 13:59:05
License: not specified in port


"Wise2 is package that is focused on comparing DNA sequences at
the level of its conceptual translation, regardless of sequencing
error and introns. This really is a rewrite of the old wisetools
package, which I wrote about 3 years ago.

It can compare a single protein or a profile HMM to a genomic DNA
sequence, and predict a gene structure. This is algorithm, called
genewise, is one of the algorithms available in Wise2. There are
other algorithms focused on EST data rather than genomic data, as
well as some other algorithm curios."
- from the web site (Ewan Birney)

WWW: http://www.ebi.ac.uk/Wise2/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:
  1. devel/pkgconf
Required Libraries:
  1. devel/glib20
  2. devel/pcre
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/wise/ && make install clean
To add the package: pkg install biology/wise


Configuration Options
===> The following configuration options are available for wise-2.4.1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://www.ebi.ac.uk/~birney/wise2/

Number of commits found: 21

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
24 Mar 2014 10:46:35
Original commit files touched by this commit  2.4.1
Revision:348933
pawel search for other commits by this committer
- Add staging support
- Unmute install commands
05 Feb 2014 23:42:06
Original commit files touched by this commit  2.4.1
Revision:342903
marino search for other commits by this committer
biology/wise: Add dragonfly support
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.4.1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
03 Aug 2013 13:44:01
Refresh Original commit files touched by this commit
Revision:324191  Sanity Test Failure
mat search for other commits by this committer
- Convert to new perl framework
- Remove MAKE_JOBS_SAFE=yes, it's the default.
03 May 2013 20:48:35
Original commit files touched by this commit  2.4.1
Revision:317247
bapt search for other commits by this committer
Fix build by adding an explicit dep on pkgconf
02 Mar 2013 14:50:25
Original commit files touched by this commit  2.4.1
Revision:313250
miwi search for other commits by this committer
- Update to 2.4.1

PR:		176552
Submitted by:	Ports Fury
19 Mar 2011 12:38:54
Original commit files touched by this commit  2.2.0
miwi search for other commits by this committer
- Get Rid MD5 support
16 Nov 2010 23:55:41
Original commit files touched by this commit  2.2.0
skreuzer search for other commits by this committer
Fix plist.

Reported by:    QAT
08 Jan 2010 01:30:20
Original commit files touched by this commit  2.2.0
pgollucci search for other commits by this committer
- SBU_FILES += pkg-message

PR:             ports/142409
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
26 Dec 2006 12:46:34
Original commit files touched by this commit  2.2.0
linimon search for other commits by this committer
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.

Hat:            portmgr
03 May 2006 23:26:35
Original commit files touched by this commit  2.2.0
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
22 Jan 2006 08:20:34
Original commit files touched by this commit  2.2.0
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
09 Jan 2006 03:25:03
Original commit files touched by this commit  2.2.0
edwin search for other commits by this committer
Fix maintainer address

    From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:   Tony Maher <anthony.maher@uts.edu.au>
31 Mar 2004 03:12:58
Original commit files touched by this commit  2.2.0
trevor search for other commits by this committer
SIZEify (maintainer timeout)
22 Oct 2003 09:29:55
Original commit files touched by this commit  2.2.0
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
24 Sep 2003 11:32:44
Original commit files touched by this commit  2.2.0
edwin search for other commits by this committer
Port update (maintainer): biology/wise

        Fenner's porsurvey show wise no longer available at original
        site.  Original site readme shows it has moved so update
        the MASTER_SITES accordingly.

PR:             ports/57154
Submmited by:   Tony Maher <tonymaher@optushome.com.au>
21 Feb 2003 11:01:38
Original commit files touched by this commit  2.2.0
knu search for other commits by this committer
De-pkg-comment.
14 Jan 2003 05:30:42
Original commit files touched by this commit  2.2.0
kris search for other commits by this committer
Add missing file
05 Nov 2002 01:44:12
Original commit files touched by this commit  2.2.0
edwin search for other commits by this committer
Modify replace RE to match syntax of sed now ("\)" -> ")"
Noticed by: bento
04 Nov 2002 05:46:38
Original commit files touched by this commit  2.2.0
edwin search for other commits by this committer
PERL -> REINPLACE
And some ports have USE_PERL5=yes now.
10 Sep 2002 13:58:40
Original commit files touched by this commit  2.2.0
dinoex search for other commits by this committer
"Wise2 is package that is focused on comparing DNA sequences at
the level of its conceptual translation, regardless of sequencing
error and introns."

Number of commits found: 21

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