non port: biology/wise/Makefile |
Number of commits found: 25 |
Wednesday, 26 Jul 2023
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00:48 Muhammad Moinur Rahman (bofh)
*/*: Fix build with llvm16 on 13.2-STABLE
As like as HEAD(14.0-RELEASE) llvm16 was merged in base for 13.2-STABLE
with the OSVERSION 1302507.
- Utilize USE_CXXSTD=c++14 or similar solution where applicable
- Update conditionals to addtionally check for OSVERSION greater than
1302507 and less than 1400000
Approved by: portmgr (blanket)
Sponsored by: The FreeBSD Foundation
95274bf |
Friday, 21 Jul 2023
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19:57 Muhammad Moinur Rahman (bofh)
biology/wise: Fix build with llvm16
Sponsored by: The FreeBSD Foundation
1f42cbb |
Wednesday, 17 May 2023
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16:30 Muhammad Moinur Rahman (bofh)
*/*: llvm15 build fixes
llvm15 was also merged into 13.2-STABLE effective from OSVERSION
1302505. Fix the ports that failed to build with llvm15.
Approved by: portmgr (blanket)
9b178ff |
Sunday, 14 May 2023
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19:59 Muhammad Moinur Rahman (bofh)
biology/wise: Unbreak on HEAD
- Add LICENSE BSD3CLAUSE GPLv2
- Pet portclippy
8520008 |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 20 Jul 2022
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14:20 Tobias C. Berner (tcberner)
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca>
* Johann Visagie <johann@egenetics.com>
* Johann Visagie <wjv@FreeBSD.org>
* Mauricio Herrera Cuadra <mauricio@arareko.net>
* Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
* Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@niid.go.jp>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Razi Khaja <razi@genet.sickkids.on.ca>
* Reed A. Cartwright <cartwright@asu.edu>
* Ryo MIYAMOTO
* Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Sangwoo Shim <sangwoos@gmail.com>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Tassilo Philipp <tphilipp@potion-studios.com>
* Tony Maher
* Tony Maher <tonym@biolateral.com.au>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Yonatan <onatan@gmail.com>
* Yuri Victorovich <yuri@rawbw.com>
* ballen
* barnhart@genetics.wustl.edu
* camson@bilateral.com.au
* chuynh@biolateral.com.au
* dbader@eece.unm.edu
* frankch@waru.life.nthu.edu.tw
* h2
* lentferj
* maho@FreeBSD.org
* mzaki@biol.s.u-tokyo.ac.jp
* tonym
* wen@FreeBSD.org
With hat: portmgr
37526bb |
Tuesday, 6 Apr 2021
|
14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Friday, 8 Nov 2019
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09:27 tobik
a-b: Add missing USES={gnome,php,sdl,xorg}
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Thursday, 8 Dec 2016
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19:52 tijl
Remove libintl.so.9 compatibility link that was added in r374303 to
prevent massive PORTREVISION bumps. Bump dependent ports that have not
been bumped since.
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Tuesday, 21 Jun 2016
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09:05 amdmi3
- Switch to options helpers
- Regenerate patches with `make makepatch`
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Saturday, 20 Dec 2014
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17:27 bapt
Cleanup plist
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Monday, 24 Mar 2014
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10:46 pawel
- Add staging support
- Unmute install commands
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Friday, 20 Sep 2013
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15:55 bapt
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Saturday, 3 Aug 2013
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13:44 mat
- Convert to new perl framework
- Remove MAKE_JOBS_SAFE=yes, it's the default.
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Friday, 3 May 2013
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20:48 bapt
Fix build by adding an explicit dep on pkgconf
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Saturday, 2 Mar 2013
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14:50 miwi
- Update to 2.4.1
PR: 176552
Submitted by: Ports Fury
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Friday, 8 Jan 2010
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01:30 pgollucci
- SBU_FILES += pkg-message
PR: ports/142409
Submitted by: Sevan Janiyan <venture37@geeklan.co.uk>
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Tuesday, 26 Dec 2006
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12:46 linimon
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.
Hat: portmgr
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Wednesday, 3 May 2006
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23:26 edwin
Remove USE_REINPLACE from all categories starting with B
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Monday, 9 Jan 2006
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03:25 edwin
Fix maintainer address
From: Tony Maher <anthony.maher@uts.edu.au>
To: Edwin Groothuis <edwin@FreeBSD.org>
Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate
Actually I need modify all my ports to use OptusNet rather than
Biolateral. Is there an easy way to do this or should I submit a
separate 1-line patch and PR for each port?
biology/crimap
biology/dna-qc
biology/flip
biology/primer3
biology/seqio
biology/wise
math/xgobi
net/generic-nqs
Submitted by: Tony Maher <anthony.maher@uts.edu.au>
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Wednesday, 24 Sep 2003
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11:32 edwin
Port update (maintainer): biology/wise
Fenner's porsurvey show wise no longer available at original
site. Original site readme shows it has moved so update
the MASTER_SITES accordingly.
PR: ports/57154
Submmited by: Tony Maher <tonymaher@optushome.com.au>
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Friday, 21 Feb 2003
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11:01 knu
De-pkg-comment.
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Tuesday, 5 Nov 2002
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01:44 edwin
Modify replace RE to match syntax of sed now ("\)" -> ")"
Noticed by: bento
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Monday, 4 Nov 2002
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05:46 edwin
PERL -> REINPLACE
And some ports have USE_PERL5=yes now.
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Tuesday, 10 Sep 2002
|
13:58 dinoex
"Wise2 is package that is focused on comparing DNA sequences at
the level of its conceptual translation, regardless of sequencing
error and introns."
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Number of commits found: 25 |