FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

I am looking for an LTO tape library. Do you have one to spare?
Commit found by message id
Sat, 24 May 2008
[ 07:01:56 edwin ] Original commit 
phd2fasta biology  Ignore files touched by this commit Restricted A converter from output files of Phred/Consed to FASTA files
head/biology/Makefile
New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
        assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of ports [& non-ports] in this commit: 2

Showing files for just one port: biology/phd2fasta

show all files

hide all files


4 files found
ActionRevisionLinksFile
import 1.1 View revision /ports/head/biology/phd2fasta/Makefile
import 1.1 View revision /ports/head/biology/phd2fasta/distinfo
import 1.1 View revision /ports/head/biology/phd2fasta/files/patch-Makefile
import 1.1 View revision /ports/head/biology/phd2fasta/pkg-descr
Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
mingw32-opensslApr 23
opensslApr 23
py-djangoApr 23
py-django-develApr 23
py-django14Apr 23
py-django15Apr 23
bugzilla40*Apr 18
bugzilla40*Apr 18
bugzilla42*Apr 18
bugzilla42*Apr 18
bugzilla44*Apr 18
bugzilla44*Apr 18
curlApr 11
dbus-glibApr 11
libaudiofileApr 11

14 vulnerabilities affecting 20 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24371
Broken 178
Deprecated 91
Ignore 533
Forbidden 6
Restricted 263
No CDROM 108
Vulnerable 29
Expired 22
Set to expire 78
Interactive 22
new 24 hours 3
new 48 hours6
new 7 days17
new fortnight32
new month137


Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.