FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

I am looking for an LTO tape library. Do you have one to spare?
Commit found by message id
Sat, 24 May 2008
[ 07:03:23 edwin ] Original commit 
phrap biology  Ignore files touched by this commit Restricted Phrap is a program for assembling shotgun DNA sequence data
head/biology/Makefile
New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
        assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of ports [& non-ports] in this commit: 2

Showing files for just one port: biology/phrap

show all files

hide all files


4 files found
ActionRevisionLinksFile
import 1.1 View revision /ports/head/biology/phrap/Makefile
import 1.1 View revision /ports/head/biology/phrap/distinfo
import 1.1 View revision /ports/head/biology/phrap/files/patch-makefile
import 1.1 View revision /ports/head/biology/phrap/pkg-descr
Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
phpmyadminSep 13
ossec-hids-clientSep 11
ossec-hids-localSep 11
ossec-hids-serverSep 11
chromiumSep 09
trafficserverSep 05
apache22*Sep 03
apache22-event-mpm*Sep 03
apache22-itk-mpm*Sep 03
apache22-peruser-mpm*Sep 03
apache22-worker-mpm*Sep 03
chromiumAug 26
fileAug 21
py-djangoAug 21
py-django-develAug 21

5 vulnerabilities affecting 12 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24092
Broken 121
Deprecated 93
Ignore 386
Forbidden 17
Restricted 205
No CDROM 94
Vulnerable 21
Expired 7
Set to expire 88
Interactive 0
new 24 hours 0
new 48 hours6
new 7 days50
new fortnight137
new month246


Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.