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Commit found by message id
Fri, 20 Sep 2013
[ 22:48:31 bapt ] Original commit   Revision:327767
2d-rewriter science files touched by this commit Cellular automata simulator
2dhf science files touched by this commit A Numerical Hartree-Fock Program for Diatomic Molecules
InsightToolkit science files touched by this commit Insight Toolkit
R-cran-AMORE science files touched by this commit MORE flexible neural network package
R-cran-DCluster science files touched by this commit Functions for the detection of spatial clusters of diseases
R-cran-Epi science files touched by this commit Package for statistical analysis in epidemiology
R-cran-bayesm science files touched by this commit Bayesian Inference for Marketing/Micro-econometrics
R-cran-e1071 science files touched by this commit Misc Functions of the Department of Statistics (e1071), TU Wien
R-cran-eco science files touched by this commit R Package for Ecological Inference in 2x2 Tables
R-cran-epicalc science files touched by this commit Epidemiological calculator
R-cran-snow science files touched by this commit Support for simple parallel computing in R
R-cran-som science files touched by this commit Self-Organizing Map
abinit science files touched by this commit Abinit calculates electronic structure of systems
afni science  Broken Ignore files touched by this commit Advanced Functional Neuro Imaging
avogadro science files touched by this commit Advanced molecular editor and viewer
bddsolve science files touched by this commit BDD-based satisfiability and reachability solver
bft science files touched by this commit Code_Saturne Base Functions and Types library
bodr science files touched by this commit Chemistry data like element and isotope properties, atomic radii, etc
brian science files touched by this commit A clock-driven simulator for spiking neural networks
buddy science files touched by this commit A Binary Decision Diagram library
cdcl science files touched by this commit Restricted Scientific graphic library for geoscience
cdf science files touched by this commit  An older version of this port was marked as vulnerable. Device independent view of the CDF data model
cdo science files touched by this commit Climate Data Operators
cgnslib science files touched by this commit CFD General Notation System library code
checkmol science files touched by this commit Analyze molecules for the presence of functional groups
chemical-mime-data science files touched by this commit A collection of chemical MIME types for UNIX desktops
chemtool science files touched by this commit Draw organic molecules easily and store them
chemtool-devel science files touched by this commit Drawing organic molecules easily and store them (developer version)
clhep science files touched by this commit Object-oriented toolkit for particle physics applications by CERN
colt science files touched by this commit Java package for scalable scientific and technical computing
crf++ science files touched by this commit Yet Another CRF toolkit
dcl science files touched by this commit Restricted Scientific graphic library for geoscience
devisor science files touched by this commit Design and Visualization Software Resource for FeatFlow
dlpoly-classic science files touched by this commit Molecular dynamics simulation package
dtiquery science  Ignore files touched by this commit Restricted Stanford DTI Visualization tool
ecs science files touched by this commit Code_Saturne Preprocessor
elmer-eio science files touched by this commit ELMER FEM Package Data base Interface
elmer-hutiter science files touched by this commit HUTIter library for use in the ELMER FEM package
elmer-matc science files touched by this commit MatC language library used by ELMER FEM package
elmer-meshgen2d science files touched by this commit A Mesh Generation Utility for use with the ELMER FEM package
elmergrid science files touched by this commit A Mesh Manipulation Utility for use with the ELMER FEM package
elmerpost science files touched by this commit Visualization of Numerical Results in the ELMER FEM package
epte science files touched by this commit Electronic Periodic Table of the Elements
euler science  Deleted Deprecated Expired files touched by this commit Program computes with real and complex numbers and matrices
fastcap science files touched by this commit Three-dimensional capacitance extraction program
fasthenry science files touched by this commit A multipole-accelerated inductance analysis program
felt science  Deleted Deprecated Expired files touched by this commit System for Finite Element Analysis
flounder science  Deleted Deprecated Expired files touched by this commit A quick way to visualize regularly spaced 4D data
fvcom science  Ignore files touched by this commit Restricted Unstructured Grid Finite Volume Coastal Ocean Model
fvcom-mpi science  Ignore files touched by this commit Restricted Unstructured Grid Finite Volume Coastal Ocean Model
fvm science files touched by this commit Code_Saturne Finite Volume Mesh
g3data science files touched by this commit Utility for extracting data from graphs
gamess science files touched by this commit Restricted A freely obtainable ab-initio molecular orbital calculation program
gchemutils science files touched by this commit C++ classes and Gtk3 widgets related to chemistry
gdis science  Deleted Deprecated Expired files touched by this commit Display and manipulation of isolated molecules and periodic systems
getdp science files touched by this commit A rather general finite element solver using mixed finite elements
ghemical science files touched by this commit Ghemical is a computational chemistry software package
ghmm science files touched by this commit General Hidden Markov Model Library in C
gnudatalanguage science files touched by this commit GDL, a free IDL compatible incremental compiler
gramps science files touched by this commit A GTK/GNOME-based genealogy program
gromacs science files touched by this commit Compute molecular dynamics
gsmc science files touched by this commit Smith chart program for impedance matching
gtamsanalyzer science files touched by this commit Qualitative Research Software for the Free World for GNUstep
gwyddion science files touched by this commit Gtk2 based SPM data visualization and analysis tool
h5utils science files touched by this commit A set of utilities for visualization and conversion of HDF5 format
harminv science files touched by this commit Solver of harmonic inversion
hdf science files touched by this commit Hierarchical Data Format library (from NCSA)
hdf-java science files touched by this commit Java interface to HDF5
hdf5 science files touched by this commit Hierarchical Data Format library (from NCSA)
hdf5-18 science files touched by this commit Hierarchical Data Format library (from NCSA)
hs-bio science files touched by this commit Bioinformatics library
isaac-cfd science files touched by this commit Integrated Solution Algorithm for Arbitrary Configuration
jmol science files touched by this commit Open-source Java viewer for chemical structures in 3D
jstrack science files touched by this commit Freeware hurricane tracking program
kalzium science files touched by this commit Periodic table of elements for KDE 4
kst2 science files touched by this commit Data viewing and plotting tool
lamprop science files touched by this commit Calculates properties of fiber reinforced composites
libctl science files touched by this commit Control Language Library
libghemical science files touched by this commit Support libraries of science/ghemical port
libint science files touched by this commit Evaluate the integrals in modern atomic and molecular theory
libkml science files touched by this commit Library for parse, generate, and operate on KML
liblinear science files touched by this commit A library for Large Linear Classification
liboglappth science files touched by this commit Support libraries of science/ghemical port
libquantum science files touched by this commit C library for quantum computing and quantum simulation
libsvm science files touched by this commit A library for Support Vector Machines
libsvm-python science files touched by this commit A library for Support Vector Machines
linsmith science files touched by this commit Smith charting program
massxpert science files touched by this commit The massXpert software for (bio)chemists
mayavi science  Deleted files touched by this commit Scientific data visualizer
mbdyn science files touched by this commit A MultiBody Dynamics analysis system
mcstas science files touched by this commit A neutron ray-trace simulation package
medit science files touched by this commit Interactive meshes visualization
meep science files touched by this commit FDTD simulation software to model electromagnetic systems
mei science files touched by this commit Code_Saturne Mathematical Expression Interpreter
minc science files touched by this commit Medical Imaging NetCDF
minc2 science files touched by this commit Medical Imaging NetCDF
mol2ps science files touched by this commit Read molecular structure files and generate Postscript output
mpb science files touched by this commit MIT Photonic-Bands
mpqc science files touched by this commit The massively parallel quantum computing library and program
mpqc-mpich science files touched by this commit The massively parallel quantum computing library and program
ncs science files touched by this commit Code_Saturne Kernel
netcdf science files touched by this commit Library for machine-independent, array-oriented data access
netcdf-ftn science files touched by this commit NetCDF (network Common Data Form), with Fortran support
netcdf3-ftn science files touched by this commit NetCDF (network Common Data Form), with Fortran support
netcdf4 science files touched by this commit Library for machine-independent, array-oriented data access
nifticlib science files touched by this commit Neuroimaging Informatics Technology Initiative data format
omnetpp science  Deleted Deprecated Expired files touched by this commit A discrete event simulation environment
openbabel science files touched by this commit Chemistry file translation program
ovt science  Deleted Ignore files touched by this commit The Orbit Visualization Tool
p5-Algorithm-SVMLight science files touched by this commit Perl interface to SVMLight Machine-Learning Package
p5-Chemistry-3DBuilder science files touched by this commit Generate 3D coordinates from a connection table
p5-Chemistry-Bond-Find science files touched by this commit Detect bonds in a molecule and assign formal bond orders
p5-Chemistry-Canonicalize science files touched by this commit Number the atoms in a molecule in a unique way
p5-Chemistry-Elements science files touched by this commit Perl extension for working with Chemical Elements
p5-Chemistry-File-MDLMol science files touched by this commit MDL molfile reader/write
p5-Chemistry-File-Mopac science files touched by this commit MOPAC 6 input file reader/writer
p5-Chemistry-File-PDB science files touched by this commit Perl module to read and write PDB files
p5-Chemistry-File-SLN science files touched by this commit SLN linear notation parser/writer
p5-Chemistry-File-SMARTS science files touched by this commit SMARTS chemical substructure pattern linear notation parser
p5-Chemistry-File-SMILES science files touched by this commit SMILES linear notation parser/writer
p5-Chemistry-File-VRML science files touched by this commit Generate VRML models for molecules
p5-Chemistry-File-XYZ science files touched by this commit XYZ molecule format reader/writer
p5-Chemistry-FormulaPattern science files touched by this commit Match molecule by formula
p5-Chemistry-InternalCoords science files touched by this commit Represent the position of an atom using internal coordinates
p5-Chemistry-Isotope science files touched by this commit Table of the isotopes exact mass data
p5-Chemistry-MacroMol science files touched by this commit Perl toolkit to describe macromolecules
p5-Chemistry-MidasPattern science files touched by this commit Select atoms in macromolecules
p5-Chemistry-Mok science files touched by this commit Molecular awk interpreter
p5-Chemistry-Mol science files touched by this commit Perl toolkit to describe molecules
p5-Chemistry-Pattern science files touched by this commit Chemical substructure pattern matching
p5-Chemistry-Reaction science files touched by this commit Represent a ring as a substructure of a molecule
p5-Chemistry-Ring science files touched by this commit Represent a ring as a substructure of a molecule
p5-Geo-BUFR science files touched by this commit Perl extension for handling of WMO BUFR files
p5-Geo-Coordinates-Converter science files touched by this commit Simple converter of geo coordinates
p5-Geo-Coordinates-Converter-iArea science files touched by this commit Some utility functions around iArea
p5-Geo-ReadGRIB science files touched by this commit Perl module provides read access to GRIB files
p5-Geo-WebService-Elevation-USGS science files touched by this commit Perl extension for elevation queries against USGS web services
p5-PerlMol science files touched by this commit Perl modules for molecular chemistry
p5-Physics-Unit science files touched by this commit Manipulate Physics units and dimensions
paje science files touched by this commit Generic visualization tool for GNUstep (Gantt chart and more)
paraview science files touched by this commit  An older version of this port was marked as vulnerable. Powerful scientific data visualization application
peekabot science  Deleted Broken Deprecated Expired Ignore files touched by this commit Distributed real-time 3D visualization tool for robotics researchers
pnetcdf science files touched by this commit Library providing high-performance I/O
psi3 science  Broken Ignore files touched by this commit An electronic structure programs for high-accuracy computations
psychopy science files touched by this commit Psychophysics toolkit for Python
py-DendroPy science files touched by this commit Phylogenetic computing library
py-coards science files touched by this commit COARDS compliant time parser
py-h5py science files touched by this commit General-purpose Python interface to the HDF5 library
py-hcluster science files touched by this commit A Hierarchical Clustering Package For Scipy
py-mdp science files touched by this commit Modular toolkit for Data Processing
py-mlpy science files touched by this commit High performance Python package for predictive modeling
py-netCDF4 science files touched by this commit Python Interface to the NetCDF Library (versions 3 and 4)
py-obspy science files touched by this commit Python framework for seismological observatories
py-paida science files touched by this commit Pure Python scientific analysis package
py-pupynere science files touched by this commit Python module for reading and writing NetCDF files
py-pydicom science files touched by this commit Read, modify, and write DICOM files with Python code
py-scikit-learn science files touched by this commit Machine learning algorithms for python
py-scimath science files touched by this commit Scientific and Mathematical calculations
py-scipy science files touched by this commit Scientific tools for Python
py-ws2300 science files touched by this commit Driver for the LaCrosse WS-2300 weather station
pybrain science files touched by this commit PyBrain is the swiss army knife for neural networking
pycdf science files touched by this commit A Python Interface to the Unidata NetCDF Library
pynn science files touched by this commit Simulator-independent language for building neuronal network models
pyteomics science files touched by this commit Python modules for proteomics data analysis
pyteomics.biolccc science files touched by this commit Python bindings for BioLCCC
qcl science files touched by this commit Quantum computer simulator
qtresistors science files touched by this commit Calculate resistance of resistor by the colors on the resistor
ruby-dcl science files touched by this commit Ruby interface to the scientific graphic library DCL
ruby-gphys science files touched by this commit A multi-purpose class to handle gridded physical quantities
ruby-netcdf science files touched by this commit Ruby interface to the NetCDF scientific IO library
rubygem-ai4r science files touched by this commit Various Ruby artificial intelligence algorithm implementations
silo science files touched by this commit Mesh and field I/O library and scientific database
simlib science files touched by this commit SIMulation LIBrary for C++ programming language
step science files touched by this commit KDE 4 interactive physics simulator
svmlight science files touched by this commit Restricted An implementation of Support Vector Machines (SVMs) in C
szip science files touched by this commit Lossless compression library for scientific data
udunits science files touched by this commit Library for manipulating units of physical quantities
v_sim science files touched by this commit Visualization of atomic structures
veusz science files touched by this commit Scientific plotting package
vmd science  Ignore files touched by this commit Restricted A molecular visualization program
voro++ science files touched by this commit Three-dimensional computations of the Voronoi tessellation
x11iraf science  Ignore files touched by this commit Provides graphical tools to work with IRAF
xfce4-equake-plugin science files touched by this commit Earthquake monitor plugin for the Xfce panel
xmakemol science files touched by this commit Molecule Viewer Program Based on Motif Widget
xmds science files touched by this commit XMDS is a code generator that integrates equations;
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

Number of ports [& non-ports] in this commit: 185

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