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Port details
R-cran-gtools Various R programming tools
3.9.5 devel on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.9.5Version of this port present on the latest quarterly branch.
Maintainer: tota@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2013-04-27 00:25:07
Last Update: 2023-11-22 00:57:59
Commit Hash: 584a8b2
License: GPLv2
WWW:
https://cran.r-project.org/web/packages/gtools/
Description:
Functions to assist in R programming, including: - assist in developing, updating, and maintaining R and R packages ('ask', 'checkRVersion', 'getDependencies', 'keywords', 'scat'), - calculate the logit and inverse logit transformations ('logit', 'inv.logit'), - test if a value is missing, empty or contains only NA and NULL values ('invalid'), - manipulate R's .Last function ('addLast'), - define macros ('defmacro'), - detect odd and even integers ('odd', 'even'), - convert strings containing non-ASCII characters (like single quotes) to plain ASCII ('ASCIIfy'), - perform a binary search ('binsearch'), - sort strings containing both numeric and character components ('mixedsort'), - create a factor variable from the quantiles of a continuous variable ('quantcut'), - enumerate permutations and combinations ('combinations', 'permutation'), - calculate and convert between fold-change and log-ratio ('foldchange', 'logratio2foldchange', 'foldchange2logratio'), - calculate probabilities and generate random numbers from Dirichlet distributions ('rdirichlet', 'ddirichlet'), - apply a function over adjacent subsets of a vector ('running'), - modify the TCP_NODELAY ('de-Nagle') flag for socket objects, - efficient 'rbind' of data frames, even if the column names don't match ('smartbind'), - generate significance stars from p-values ('stars.pval'), - convert characters to/from ASCII codes ('asc', 'chr'), - convert character vector to ASCII representation ('ASCIIfy'), - apply title capitalization rules to a character vector ('capwords').
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/R-cran-gtools-3.9.5/catalog.mk
  2. /usr/local/share/licenses/R-cran-gtools-3.9.5/LICENSE
  3. /usr/local/share/licenses/R-cran-gtools-3.9.5/GPLv2
Collapse this list.
Dependency lines:
  • R-cran-gtools>0:devel/R-cran-gtools
To install the port:
cd /usr/ports/devel/R-cran-gtools/ && make install clean
To add the package, run one of these commands:
  • pkg install devel/R-cran-gtools
  • pkg install R-cran-gtools
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: R-cran-gtools
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1700541561 SHA256 (gtools_3.9.5.tar.gz) = dee9b6c1152db1a5dc427d074b32bbbb738708683f17a95e0e95e4d79fdf174b SIZE (gtools_3.9.5.tar.gz) = 242029

Packages (timestamps in pop-ups are UTC):
R-cran-gtools
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest3.9.53.9.53.8.2_13.9.53.9.5---
FreeBSD:13:quarterly3.9.53.9.5-3.9.53.9.5-3.9.53.9.5
FreeBSD:14:latest3.9.53.9.5-3.9.53.9.5---
FreeBSD:14:quarterly3.9.53.9.5-3.9.53.9.5-3.9.53.9.5
FreeBSD:15:latest3.9.53.9.5n/a3.9.5n/a-3.9.53.9.5
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. R : math/R
  2. gfortran12 : lang/gcc12
  3. as : devel/binutils
Runtime dependencies:
  1. R : math/R
  2. gfortran12 : lang/gcc12
This port is required by:
for Run
  1. devel/R-cran-gdata

Configuration Options:
No options to configure
Options name:
devel_R-cran-gtools
USES:
cran:auto-plist,compiles
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (18 items)
Collapse this list.
  1. http://camoruco.ing.uc.edu.ve/cran/src/contrib/
  2. http://camoruco.ing.uc.edu.ve/cran/src/contrib/Archive/gtools/
  3. http://cran.utstat.utoronto.ca/src/contrib/
  4. http://cran.utstat.utoronto.ca/src/contrib/Archive/gtools/
  5. https://cloud.r-project.org/src/contrib/
  6. https://cloud.r-project.org/src/contrib/Archive/gtools/
  7. https://cran.csiro.au/src/contrib/
  8. https://cran.csiro.au/src/contrib/Archive/gtools/
  9. https://cran.ism.ac.jp/src/contrib/
  10. https://cran.ism.ac.jp/src/contrib/Archive/gtools/
  11. https://cran.ma.imperial.ac.uk/src/contrib/
  12. https://cran.ma.imperial.ac.uk/src/contrib/Archive/gtools/
  13. https://mirror.las.iastate.edu/CRAN/src/contrib/
  14. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/gtools/
  15. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  16. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/gtools/
  17. https://stat.ethz.ch/CRAN/src/contrib/
  18. https://stat.ethz.ch/CRAN/src/contrib/Archive/gtools/
Collapse this list.

Number of commits found: 37

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.9.5
22 Nov 2023 00:57:59
commit hash: 584a8b2a7b37e019baaec254b52647497ea0d721commit hash: 584a8b2a7b37e019baaec254b52647497ea0d721commit hash: 584a8b2a7b37e019baaec254b52647497ea0d721commit hash: 584a8b2a7b37e019baaec254b52647497ea0d721 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
devel/R-cran-gtools: Update to 3.9.5

Reported by:	portscout
3.9.4
11 May 2023 05:58:09
commit hash: 593c2cec0958c20f8b7444816d36eaf674401072commit hash: 593c2cec0958c20f8b7444816d36eaf674401072commit hash: 593c2cec0958c20f8b7444816d36eaf674401072commit hash: 593c2cec0958c20f8b7444816d36eaf674401072 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
devel/R-cran-gtools: Update to 3.9.4

- Update to 3.9.4
- Update pkg-descr
3.9.3_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.9.3
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.9.3
20 Jul 2022 14:21:35
commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
devel: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  "Waitman Gobble" <uzimac@da3m0n8t3r.com>
  *  <jkoshy@FreeBSD.org>
  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Aaron H. K. Diep <ahkdiep@gmail.com>
  *  Aaron Hurt <ahurt@anbcs.com>
  *  Abel Chow <abel_chow@yahoo.com>
  *  Adam McLaurin
  *  Adam Saponara <as@php.net>
  *  Adam Weinberger <adamw@FreeBSD.org>
  *  Ade Lovett <ade@FreeBSD.org>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.9.3
17 Jul 2022 06:45:26
commit hash: c60c3a90e5c0d9cbdd4395ef645f0bd3dd719afdcommit hash: c60c3a90e5c0d9cbdd4395ef645f0bd3dd719afdcommit hash: c60c3a90e5c0d9cbdd4395ef645f0bd3dd719afdcommit hash: c60c3a90e5c0d9cbdd4395ef645f0bd3dd719afd files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
devel/R-cran-gtools: Update to 3.9.3
3.9.2.2
14 Jun 2022 08:43:49
commit hash: 2f7a04a88563d895e43b739d8d09bed6de593960commit hash: 2f7a04a88563d895e43b739d8d09bed6de593960commit hash: 2f7a04a88563d895e43b739d8d09bed6de593960commit hash: 2f7a04a88563d895e43b739d8d09bed6de593960 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
devel/R-cran-gtools: Update to 3.9.2.2
3.9.2.1
24 May 2022 15:49:33
commit hash: b7b18303531d62dd6f09c957ba5620000e3a882bcommit hash: b7b18303531d62dd6f09c957ba5620000e3a882bcommit hash: b7b18303531d62dd6f09c957ba5620000e3a882bcommit hash: b7b18303531d62dd6f09c957ba5620000e3a882b files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
devel/R-cran-gtools: Update to 3.9.2.1
3.9.2
07 Jun 2021 11:03:39
commit hash: 6f0ab53bf8d991f6a8ef986ce10d7f64a095e325commit hash: 6f0ab53bf8d991f6a8ef986ce10d7f64a095e325commit hash: 6f0ab53bf8d991f6a8ef986ce10d7f64a095e325commit hash: 6f0ab53bf8d991f6a8ef986ce10d7f64a095e325 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
devel/R-cran-gtools: Update to 3.9.2
3.8.2_1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
3.8.2_1
05 May 2020 16:07:54
Revision:534095Original commit files touched by this commit
jrm search for other commits by this committer
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
3.8.2
05 Apr 2020 02:44:17
Revision:530741Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.8.2
- Update WWW: line in pkg-descr
3.8.1_2
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
3.8.1_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
3.8.1
02 Jul 2018 06:05:06
Revision:473707Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.8.1
3.5.0_2
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
3.5.0_1
18 Jun 2017 18:09:17
Revision:443845Original commit files touched by this commit
dbn search for other commits by this committer
qa: add check for NO_ARCH

If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
3.5.0
11 Jun 2015 13:27:40
Revision:389205Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.5.0
- Change LICENSE from LGPL21 to GPLv2
3.4.2
04 May 2015 04:04:28
Revision:385374Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.4.2
3.4.1_1
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
3.4.1
15 Jun 2014 20:47:44
Revision:357926Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.4.1
3.4.0
20 Apr 2014 14:47:48
Revision:351624Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.4.0
3.3.1
13 Mar 2014 15:59:29
Revision:348092Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.3.1
3.3.0_1
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
3.3.0
13 Feb 2014 20:50:44
Revision:344144Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.3.0
3.2.1
14 Jan 2014 13:46:31
Revision:339685Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.2.1
3.1.1
28 Dec 2013 10:28:41
Revision:337846Original commit files touched by this commit
dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
3.1.1
27 Nov 2013 18:56:44
Revision:335044Original commit files touched by this commit
dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
3.1.1
23 Nov 2013 06:04:02
Revision:334642Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.1.1
3.1.0_2
13 Nov 2013 08:19:35
Revision:333659Original commit files touched by this commit
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
3.1.0_1
26 Oct 2013 00:52:36
Revision:331644Original commit files touched by this commit
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.1.0
27 Sep 2013 23:37:12
Revision:328534Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.1.0
3.0.0
20 Sep 2013 17:17:45
Revision:327726Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
devel part 4)
3.0.0
09 Jul 2013 20:58:17
Revision:322574Original commit files touched by this commit
tota search for other commits by this committer
- Update to 3.0.0
2.7.1_1
28 May 2013 15:15:06
Revision:319316Original commit files touched by this commit
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
2.7.1
27 Apr 2013 00:24:52
Revision:316644Original commit files touched by this commit
tota search for other commits by this committer
- Add new port: devel/R-cran-gtools

  Various R programming tools

  WWW: http://cran.r-project.org/web/packages/gtools/

Number of commits found: 37