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Port details
rubygem-bioruby Integrated environment for Bioinformatics written in Ruby
1.4.3.0001 devel Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: ruby@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 Jun 2009 12:46:08
Also Listed In: rubygems
License: not specified in port
BioRuby project aims to implement integrated environment for
Bioinformatics by using Ruby.

WWW: http://bioruby.org/
SVNWeb : Homepage : PortsMon : pkg-plist

No installation instructions: this port has been deleted.

The package name of this deleted port was: rubygem-bioruby

PKGNAME: rubygem-bioruby

distinfo: There is no distinfo for this port.


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gem20 : devel/ruby-gems
  2. ruby20 : lang/ruby20
Runtime dependencies:
  1. gem20 : devel/ruby-gems
  2. ruby20 : lang/ruby20
Patch dependencies:
  1. gem20 : devel/ruby-gems
  2. ruby20 : lang/ruby20
Extract dependencies:
  1. ruby20 : lang/ruby20
There are no ports dependent upon this port

Configuration Options
     No options to configure

Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/rubygem/
  2. http://production.cf.rubygems.org/gems/
  3. http://production.s3.rubygems.org/gems/
Port Moves
  • port moved to devel/rubygem-bio on 2015-05-23
    REASON: Rename to match our rubygems naming

Number of commits found: 15

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
23 May 2015 07:15:00
Original commit files touched by this commit  1.4.3.0001
Revision:387110
sunpoet search for other commits by this committer
- Move devel/rubygem-bioruby to devel/rubygem-bio
- Add LICENSE
19 Aug 2014 15:35:36
Original commit files touched by this commit  1.4.3.0001
Revision:365393
swills search for other commits by this committer
many ruby/rubygem ports: death of rubyforge.org

rubyforge.org shutdown on May 15, 2014. This commit accounts for that by doing
several things:

- Deprecate ruby that had only rubyforge.org as MASTER_SITES (and so are now
  only fetchable via our cache)
- Deprecate ports that depend on those
- Update the WWW pkg-descr line that points to rubyforge.org for rubygem ports
  (which are still fetchable from rubygems.org)

The next step will be to remove rubyforge.org from bsd.sites.mk, after these
deprecated ports are deleted.

Phabric:	D591
With hat:	ruby
Approved by:	portmgr (because of committing to unstaged graphics/mingplot port)
30 Oct 2013 02:29:23
Original commit files touched by this commit  1.4.3.0001
Revision:332034
swills search for other commits by this committer
- Add stage support
20 Sep 2013 17:17:45
Original commit files touched by this commit  1.4.3.0001
Revision:327726
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
devel part 4)
29 Jun 2013 22:10:31
Original commit files touched by this commit  1.4.3.0001
Revision:322068
swills search for other commits by this committer
- Update to 1.4.3.0001
27 Aug 2012 11:54:51
Original commit files touched by this commit  1.4.3
wen search for other commits by this committer
- Update to 1.4.3
17 Oct 2011 08:25:45
Original commit files touched by this commit  1.4.2
clsung search for other commits by this committer
- Update to 1.4.2
23 Jun 2011 18:03:54
Original commit files touched by this commit  1.4.1
pgollucci search for other commits by this committer
- Removing remaining MD5 from rubygem- ports
29 Oct 2010 06:10:14
Original commit files touched by this commit  1.4.1
wen search for other commits by this committer
- Update to 1.4.1
20 Oct 2010 01:35:47
Original commit files touched by this commit  1.4.0
pgollucci search for other commits by this committer
- Mass fixup of WWW: lines pkg-descr based on rubygems.org Homepage meta info

Prompted by:    distilator
With Hat:       ruby@
Sponsored by:   RideCharge Inc. / TaxiMagic
26 Aug 2010 23:52:26
Original commit files touched by this commit  1.4.0
pgollucci search for other commits by this committer
Move wen@FreeBSD.org -> ruby@FreeBSD.org for rubygem-*

Approved by:    wen
With Hat:       ruby
26 May 2010 19:51:35
Original commit files touched by this commit  1.4.0
pgollucci search for other commits by this committer
- Mass conversion of RF -> RG for MASTER_SITE for rubygem- ports
  [RG aka rubygems.org]

PR:             ports/147005
Submitted by:   pgollucci (myself)
Approved by:    portmgr (pav)
With Hat:       ruby@
01 Jan 2010 04:02:40
Original commit files touched by this commit  1.4.0
wen search for other commits by this committer
- Update to 1.4.0
- Update my email address to FreeBSD
05 Sep 2009 00:54:20
Original commit files touched by this commit  1.3.1
miwi search for other commits by this committer
- Update to 1.3.1

Approved by:    maintainer implicit
22 Jun 2009 12:45:47
Original commit files touched by this commit  1.3.0
miwi search for other commits by this committer
BioRuby project aims to implement integrated environment for
Bioinformatics by using Ruby.

WWW:    http://bioruby.org/

PR:             ports/135856
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 15

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