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Port details
R-cran-MCMCpack Markov chain Monte Carlo Package
1.3.7 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: tota@FreeBSD.org search for ports maintained by this maintainer
Port Added: 18 Nov 2012 04:35:07
License: GPLv3
This package contains functions to perform Bayesian inference using
posterior simulation for a number of statistical models. Most
simulation is done in compiled C++ written in the Scythe Statistical
Library Version 1.0.3. All models return coda mcmc objects that can
then be summarized using the coda package. Some useful utility
functions such as density functions, pseudo-random number generators
for statistical distributions, a general purpose Metropolis sampling
algorithm, and tools for visualization are provided.

WWW: https://cran.r-project.org/web/packages/MCMCpack/
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/R-cran-MCMCpack/ && make install clean
To add the package: pkg install R-cran-MCMCpack

PKGNAME: R-cran-MCMCpack

distinfo:

TIMESTAMP = 1471868313
SHA256 (MCMCpack_1.3-7.tar.gz) = 9af7ccd89fefcda691f30120cb852b84aa93d4af62ac7ccab6ee915e23f2610b
SIZE (MCMCpack_1.3-7.tar.gz) = 551738


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. R-cran-coda>0.11.3 : math/R-cran-coda
  2. R-cran-mcmc>0 : math/R-cran-mcmc
  3. R-cran-quantreg>0 : math/R-cran-quantreg
  4. R : math/R
  5. gfortran48 : lang/gcc
  6. as : devel/binutils
Runtime dependencies:
  1. R-cran-coda>0.11.3 : math/R-cran-coda
  2. R-cran-mcmc>0 : math/R-cran-mcmc
  3. R-cran-quantreg>0 : math/R-cran-quantreg
  4. R : math/R
  5. gfortran48 : lang/gcc

This port is required by:

for Build for Run * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options
     No options to configure

USES:
cran:auto-plist,compiles

Master Sites:
  1. http://cran.cnr.berkeley.edu/src/contrib/
  2. http://cran.cnr.berkeley.edu/src/contrib/Archive/MCMCpack/
  3. http://cran.md.tsukuba.ac.jp/src/contrib/
  4. http://cran.md.tsukuba.ac.jp/src/contrib/Archive/MCMCpack/
  5. http://cran.ms.unimelb.edu.au/src/contrib/
  6. http://cran.ms.unimelb.edu.au/src/contrib/Archive/MCMCpack/
  7. http://cran.rakanu.com/src/contrib/
  8. http://cran.rakanu.com/src/contrib/Archive/MCMCpack/
  9. http://cran.stat.unipd.it/src/contrib/
  10. http://cran.stat.unipd.it/src/contrib/Archive/MCMCpack/
  11. http://cran.univ-lyon1.fr/src/contrib/
  12. http://cran.univ-lyon1.fr/src/contrib/Archive/MCMCpack/
  13. http://ftp.ctex.org/mirrors/CRAN/src/contrib/
  14. http://ftp.ctex.org/mirrors/CRAN/src/contrib/Archive/MCMCpack/
  15. http://ftp5.gwdg.de/pub/misc/cran/src/contrib/
  16. http://ftp5.gwdg.de/pub/misc/cran/src/contrib/Archive/MCMCpack/
  17. http://mirror.its.dal.ca/cran/src/contrib/
  18. http://mirror.its.dal.ca/cran/src/contrib/Archive/MCMCpack/
  19. http://mirrors.dotsrc.org/cran/src/contrib/
  20. http://mirrors.dotsrc.org/cran/src/contrib/Archive/MCMCpack/
  21. http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/
  22. http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/Archive/MCMCpack/

Number of commits found: 19

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
24 Aug 2016 06:03:22
Original commit files touched by this commit  1.3.7
Revision:420763
tota search for other commits by this committer
- Update to 1.3-7
14 Jul 2016 11:37:38
Original commit files touched by this commit  1.3.6
Revision:418527
tota search for other commits by this committer
- Update to 1.3-6
- Update descrption and WWW line in pkg-descr
18 Jun 2016 17:46:31
Original commit files touched by this commit  1.3.3_5
Revision:417077  Sanity Test Failure
dbn search for other commits by this committer
Mk/Uses/cran: add "compiles" argument.

[1] Add "compiles" argument to cran to allow R-cran ports need to compile
code to bring in the correct compiler dependencies.  Also, ensure
consistency between the compiler selected by the R port and the R-cran ports.

[2] Migrate R-cran ports that manually specify the compiler to
USES=cran,compiles.

PR:		210343
Approved by:	wen (1), portmgr (2, blanket)
01 Apr 2016 14:16:20
Original commit files touched by this commit  1.3.3_5
Revision:412348
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
10 Sep 2014 20:50:37
Original commit files touched by this commit  1.3.3_5
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
10 Mar 2014 20:55:22
Original commit files touched by this commit  1.3.3_4
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
01 Mar 2014 21:23:14
Original commit files touched by this commit  1.3.3_3
Revision:346721
gerald search for other commits by this committer
Replace USE_GCC=4.2+ by USE_GCC=any. [1]
And USE_GMAKE by USES=gmake where touching a port because of the above.

Approved by:	portmgr (bapt) [1]
28 Dec 2013 10:28:41
Original commit files touched by this commit  1.3.3_3
Revision:337846
dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
27 Nov 2013 18:56:44
Original commit files touched by this commit  1.3.3_3
Revision:335044
dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
13 Nov 2013 08:19:35
Original commit files touched by this commit  1.3.3_3
Revision:333659
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
26 Oct 2013 00:52:36
Original commit files touched by this commit  1.3.3_2
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 20:55:06
Original commit files touched by this commit  1.3.3_1
Revision:327746
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
math)
28 May 2013 15:15:06
Original commit files touched by this commit  1.3.3_1
Revision:319316
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
03 May 2013 15:57:58
Original commit files touched by this commit  1.3.3
Revision:317216
tota search for other commits by this committer
- Update to 1.3-3
20 Apr 2013 23:10:26
Original commit files touched by this commit  1.3.2
Revision:316167
tota search for other commits by this committer
- Update to 1.3-2
- Update pkg-descr

Feature safe:	yes
19 Apr 2013 22:29:14
Original commit files touched by this commit  1.3.1
Revision:316120
tota search for other commits by this committer
- Update to 1.3-1

Feature safe:	yes
07 Mar 2013 04:21:35
Original commit files touched by this commit  1.2.4_2
Revision:313562
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
04 Jan 2013 17:51:39
Original commit files touched by this commit  1.2.4_1
Revision:309935
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
18 Nov 2012 04:34:54
Original commit files touched by this commit  1.2.4
Revision:307527
tota search for other commits by this committer
- Add a new port: math/R-cran-MCMCpack

  This package contains functions to perform Bayesian inference using
  posterior simulation for a number of statistical models. Most
  simulation is done in compiled C++ written in the Scythe Statistical
  Library Version 1.0.3. All models return coda mcmc objects that can
  then be summarized using the coda package. MCMCpack also contains
  some useful utility functions, including some additional density
  functions and pseudo-random number generators for statistical
  distributions, a general purpose Metropolis sampling algorithm, and
  tools for visualization.

  WWW: http://cran.r-project.org/web/packages/MCMCpack/

Feature safe:	yes

Number of commits found: 19

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