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Port details
R-cran-MCMCpack Markov chain Monte Carlo Package
1.7.0 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.6.3_1Version of this port present on the latest quarterly branch.
Maintainer: tota@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2012-11-18 04:35:07
Last Update: 2024-01-20 02:34:52
Commit Hash: 18ca0cf
License: GPLv3
WWW:
https://cran.r-project.org/web/packages/MCMCpack/
Description:
This package contains functions to perform Bayesian inference using posterior simulation for a number of statistical models. Most simulation is done in compiled C++ written in the Scythe Statistical Library Version 1.0.3. All models return coda mcmc objects that can then be summarized using the coda package. Some useful utility functions such as density functions, pseudo-random number generators for statistical distributions, a general purpose Metropolis sampling algorithm, and tools for visualization are provided.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/R-cran-MCMCpack-1.7.0/catalog.mk
  2. /usr/local/share/licenses/R-cran-MCMCpack-1.7.0/LICENSE
  3. /usr/local/share/licenses/R-cran-MCMCpack-1.7.0/GPLv3
Collapse this list.
Dependency lines:
  • R-cran-MCMCpack>0:math/R-cran-MCMCpack
To install the port:
cd /usr/ports/math/R-cran-MCMCpack/ && make install clean
To add the package, run one of these commands:
  • pkg install math/R-cran-MCMCpack
  • pkg install R-cran-MCMCpack
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: R-cran-MCMCpack
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1705669095 SHA256 (MCMCpack_1.7-0.tar.gz) = 846073d710017ec1dc9a2b4616cb6aeb60ce04e3500a37214522818d34045def SIZE (MCMCpack_1.7-0.tar.gz) = 725251

Packages (timestamps in pop-ups are UTC):
R-cran-MCMCpack
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.7.01.7.01.5.01.7.01.7.0---
FreeBSD:13:quarterly1.6.3_11.6.3_1-1.6.3_11.6.3_1-1.6.3_11.6.3_1
FreeBSD:14:latest1.7.01.7.0-1.7.01.7.0---
FreeBSD:14:quarterly1.6.3_11.6.3_1-1.6.3_11.6.3_1-1.6.3_11.6.3_1
FreeBSD:15:latest1.7.01.7.0n/a1.7.0n/a-1.7.01.7.0
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. R : math/R
  2. gfortran12 : lang/gcc12
  3. as : devel/binutils
Runtime dependencies:
  1. R-cran-coda>=0.11.3 : math/R-cran-coda
  2. R-cran-mcmc>0 : math/R-cran-mcmc
  3. R-cran-quantreg>0 : math/R-cran-quantreg
  4. R : math/R
  5. gfortran12 : lang/gcc12
This port is required by:
for Build
  1. math/R-cran-Zelig
for Run
  1. math/R-cran-Zelig

Configuration Options:
No options to configure
Options name:
math_R-cran-MCMCpack
USES:
cran:auto-plist,compiles
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (18 items)
Collapse this list.
  1. http://camoruco.ing.uc.edu.ve/cran/src/contrib/
  2. http://camoruco.ing.uc.edu.ve/cran/src/contrib/Archive/MCMCpack/
  3. http://cran.utstat.utoronto.ca/src/contrib/
  4. http://cran.utstat.utoronto.ca/src/contrib/Archive/MCMCpack/
  5. https://cloud.r-project.org/src/contrib/
  6. https://cloud.r-project.org/src/contrib/Archive/MCMCpack/
  7. https://cran.csiro.au/src/contrib/
  8. https://cran.csiro.au/src/contrib/Archive/MCMCpack/
  9. https://cran.ism.ac.jp/src/contrib/
  10. https://cran.ism.ac.jp/src/contrib/Archive/MCMCpack/
  11. https://cran.ma.imperial.ac.uk/src/contrib/
  12. https://cran.ma.imperial.ac.uk/src/contrib/Archive/MCMCpack/
  13. https://mirror.las.iastate.edu/CRAN/src/contrib/
  14. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/MCMCpack/
  15. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  16. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/MCMCpack/
  17. https://stat.ethz.ch/CRAN/src/contrib/
  18. https://stat.ethz.ch/CRAN/src/contrib/Archive/MCMCpack/
Collapse this list.

Number of commits found: 45

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.7.0
20 Jan 2024 02:34:52
commit hash: 18ca0cff76eecb4742503d4e6d4017fa95ffb0e6commit hash: 18ca0cff76eecb4742503d4e6d4017fa95ffb0e6commit hash: 18ca0cff76eecb4742503d4e6d4017fa95ffb0e6commit hash: 18ca0cff76eecb4742503d4e6d4017fa95ffb0e6 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
math/R-cran-MCMCpack: Update to 1.7-0

Reported by:	portscou
1.6.3_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.6.3
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.6.3
20 Jul 2022 14:22:24
commit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5da files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.6.3
16 Apr 2022 11:42:20
commit hash: 1a4b99b968386f4bdaa265c6a5e46fc82c6e848fcommit hash: 1a4b99b968386f4bdaa265c6a5e46fc82c6e848fcommit hash: 1a4b99b968386f4bdaa265c6a5e46fc82c6e848fcommit hash: 1a4b99b968386f4bdaa265c6a5e46fc82c6e848f files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
math/R-cran-MCMCpack: Update to 1.6-3
1.6.2
01 Apr 2022 11:18:23
commit hash: f606d82f1aad27380192d0e2d0ac428546f0ff13commit hash: f606d82f1aad27380192d0e2d0ac428546f0ff13commit hash: f606d82f1aad27380192d0e2d0ac428546f0ff13commit hash: f606d82f1aad27380192d0e2d0ac428546f0ff13 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
math/R-cran-MCMCpack: Update to 1.6-2
1.6.1
06 Mar 2022 11:14:07
commit hash: 7495c85a4dfd193378a4dcf2b6c3443c6532f8f8commit hash: 7495c85a4dfd193378a4dcf2b6c3443c6532f8f8commit hash: 7495c85a4dfd193378a4dcf2b6c3443c6532f8f8commit hash: 7495c85a4dfd193378a4dcf2b6c3443c6532f8f8 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
math/R-cran-MCMCpack: Update to 1.6-1
1.6.0
10 Oct 2021 09:28:33
commit hash: f3c74f92c0dacbead2430c5cf706fb6ca6b90faacommit hash: f3c74f92c0dacbead2430c5cf706fb6ca6b90faacommit hash: f3c74f92c0dacbead2430c5cf706fb6ca6b90faacommit hash: f3c74f92c0dacbead2430c5cf706fb6ca6b90faa files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
math/R-cran-MCMCpack: Update to 1.6-0
1.5.0
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.5.0
22 Jan 2021 12:43:19
Revision:562302Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.5-0
1.4.9
10 Aug 2020 05:16:38
Revision:544588Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-9
1.4.8
05 Jun 2020 07:42:30
Revision:537992Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-8
1.4.7
11 May 2020 21:27:47
Revision:534961Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-7
1.4.6_1
05 May 2020 16:07:54
Revision:534095Original commit files touched by this commit
jrm search for other commits by this committer
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
1.4.6
16 Feb 2020 04:39:00
Revision:526247Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-6
1.4.5
03 Dec 2019 15:18:36
Revision:518946Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-5
1.4.4_2
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
1.4.4_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
1.4.4
18 Sep 2018 05:34:24
Revision:479974Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-4
1.4.3
17 May 2018 05:20:42
Revision:470196Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-3
1.4.2
14 Mar 2018 09:59:29
Revision:464479Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-2
1.4.0_1
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
1.4.0
06 Jun 2017 08:44:52
Revision:442749Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.4-0
1.3.9
08 Feb 2017 02:40:11
Revision:433631Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.3-9 [1]
- Fix minimal version of CRAN_DEPENDS

Submitted by:	wen@ (via private e-mail) [1]
1.3.8
03 Dec 2016 15:46:31
Revision:427622Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.3-8
1.3.7
24 Aug 2016 06:03:22
Revision:420763Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.3-7
1.3.6
14 Jul 2016 11:37:38
Revision:418527Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.3-6
- Update descrption and WWW line in pkg-descr
1.3.3_5
18 Jun 2016 17:46:31
Revision:417077Original commit files touched by this commit Sanity Test Failure
dbn search for other commits by this committer
Mk/Uses/cran: add "compiles" argument.

[1] Add "compiles" argument to cran to allow R-cran ports need to compile
code to bring in the correct compiler dependencies.  Also, ensure
consistency between the compiler selected by the R port and the R-cran ports.

[2] Migrate R-cran ports that manually specify the compiler to
USES=cran,compiles.

PR:		210343
Approved by:	wen (1), portmgr (2, blanket)
1.3.3_5
01 Apr 2016 14:16:20
Revision:412348Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
1.3.3_5
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
1.3.3_4
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
1.3.3_3
01 Mar 2014 21:23:14
Revision:346721Original commit files touched by this commit
gerald search for other commits by this committer
Replace USE_GCC=4.2+ by USE_GCC=any. [1]
And USE_GMAKE by USES=gmake where touching a port because of the above.

Approved by:	portmgr (bapt) [1]
1.3.3_3
28 Dec 2013 10:28:41
Revision:337846Original commit files touched by this commit
dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
1.3.3_3
27 Nov 2013 18:56:44
Revision:335044Original commit files touched by this commit
dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
1.3.3_3
13 Nov 2013 08:19:35
Revision:333659Original commit files touched by this commit
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
1.3.3_2
26 Oct 2013 00:52:36
Revision:331644Original commit files touched by this commit
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.3.3_1
20 Sep 2013 20:55:06
Revision:327746Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
math)
1.3.3_1
28 May 2013 15:15:06
Revision:319316Original commit files touched by this commit
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
1.3.3
03 May 2013 15:57:58
Revision:317216Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.3-3
1.3.2
20 Apr 2013 23:10:26
Revision:316167Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.3-2
- Update pkg-descr

Feature safe:	yes
1.3.1
19 Apr 2013 22:29:14
Revision:316120Original commit files touched by this commit
tota search for other commits by this committer
- Update to 1.3-1

Feature safe:	yes
1.2.4_2
07 Mar 2013 04:21:35
Revision:313562Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
1.2.4_1
04 Jan 2013 17:51:39
Revision:309935Original commit files touched by this commit
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
1.2.4
18 Nov 2012 04:34:54
Revision:307527Original commit files touched by this commit
tota search for other commits by this committer
- Add a new port: math/R-cran-MCMCpack

  This package contains functions to perform Bayesian inference using
  posterior simulation for a number of statistical models. Most
  simulation is done in compiled C++ written in the Scythe Statistical
  Library Version 1.0.3. All models return coda mcmc objects that can
  then be summarized using the coda package. MCMCpack also contains
  some useful utility functions, including some additional density
  functions and pseudo-random number generators for statistical
  distributions, a general purpose Metropolis sampling algorithm, and
  tools for visualization.

  WWW: http://cran.r-project.org/web/packages/MCMCpack/

Feature safe:	yes

Number of commits found: 45