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Port details
R-cran-NMF Algorithms and Framework for Nonnegative Matrix Factorization
0.27 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.26Version of this port present on the latest quarterly branch.
Maintainer: bofh@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2015-08-11 19:50:48
Last Update: 2024-02-10 19:06:41
Commit Hash: d3edbdc
License: GPLv2+
WWW:
https://cran.r-project.org/web/packages/NMF/
Description:
Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/R-cran-NMF-0.27/catalog.mk
  2. /usr/local/share/licenses/R-cran-NMF-0.27/LICENSE
  3. /usr/local/share/licenses/R-cran-NMF-0.27/GPLv2+
Collapse this list.
Dependency lines:
  • R-cran-NMF>0:math/R-cran-NMF
To install the port:
cd /usr/ports/math/R-cran-NMF/ && make install clean
To add the package, run one of these commands:
  • pkg install math/R-cran-NMF
  • pkg install R-cran-NMF
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: R-cran-NMF
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1707583489 SHA256 (NMF_0.27.tar.gz) = af4302efca4a7654fecd31c376f1bb3496428279a50b8d5691c8a7e66e3f3ef9 SIZE (NMF_0.27.tar.gz) = 1673247

Packages (timestamps in pop-ups are UTC):
R-cran-NMF
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.270.270.21.0_30.270.27---
FreeBSD:13:quarterly0.260.26-0.260.26-0.260.26
FreeBSD:14:latest0.270.27-0.270.27---
FreeBSD:14:quarterly0.260.26-0.260.26-0.260.26
FreeBSD:15:latest0.270.27n/a0.27n/a-0.260.27
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. R-cran-pkgmaker>=0.20 : devel/R-cran-pkgmaker
  2. R-cran-registry>0 : devel/R-cran-registry
  3. R-cran-rngtools>=1.2.3 : devel/R-cran-rngtools
  4. R-cran-stringr>=1.0.0 : textproc/R-cran-stringr
  5. R-cran-digest>0 : security/R-cran-digest
  6. R-cran-gridBase>0 : graphics/R-cran-gridBase
  7. R-cran-colorspace>0 : graphics/R-cran-colorspace
  8. R-cran-RColorBrewer>0 : graphics/R-cran-RColorBrewer
  9. R-cran-foreach>0 : devel/R-cran-foreach
  10. R-cran-doParallel>0 : devel/R-cran-doParallel
  11. R-cran-ggplot2>0 : graphics/R-cran-ggplot2
  12. R-cran-reshape2>0 : devel/R-cran-reshape2
  13. R-cran-BiocManager>0 : biology/R-cran-BiocManager
  14. R-cran-Biobase>0 : biology/R-cran-Biobase
  15. R : math/R
  16. gfortran12 : lang/gcc12
  17. as : devel/binutils
Runtime dependencies:
  1. R-cran-pkgmaker>=0.20 : devel/R-cran-pkgmaker
  2. R-cran-registry>0 : devel/R-cran-registry
  3. R-cran-rngtools>=1.2.3 : devel/R-cran-rngtools
  4. R-cran-stringr>=1.0.0 : textproc/R-cran-stringr
  5. R-cran-digest>0 : security/R-cran-digest
  6. R-cran-gridBase>0 : graphics/R-cran-gridBase
  7. R-cran-colorspace>0 : graphics/R-cran-colorspace
  8. R-cran-RColorBrewer>0 : graphics/R-cran-RColorBrewer
  9. R-cran-foreach>0 : devel/R-cran-foreach
  10. R-cran-doParallel>0 : devel/R-cran-doParallel
  11. R-cran-ggplot2>0 : graphics/R-cran-ggplot2
  12. R-cran-reshape2>0 : devel/R-cran-reshape2
  13. R-cran-BiocManager>0 : biology/R-cran-BiocManager
  14. R-cran-Biobase>0 : biology/R-cran-Biobase
  15. R : math/R
  16. gfortran12 : lang/gcc12
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
math_R-cran-NMF
USES:
cran:auto-plist,compiles
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (18 items)
Collapse this list.
  1. http://camoruco.ing.uc.edu.ve/cran/src/contrib/
  2. http://camoruco.ing.uc.edu.ve/cran/src/contrib/Archive/NMF/
  3. http://cran.utstat.utoronto.ca/src/contrib/
  4. http://cran.utstat.utoronto.ca/src/contrib/Archive/NMF/
  5. https://cloud.r-project.org/src/contrib/
  6. https://cloud.r-project.org/src/contrib/Archive/NMF/
  7. https://cran.csiro.au/src/contrib/
  8. https://cran.csiro.au/src/contrib/Archive/NMF/
  9. https://cran.ism.ac.jp/src/contrib/
  10. https://cran.ism.ac.jp/src/contrib/Archive/NMF/
  11. https://cran.ma.imperial.ac.uk/src/contrib/
  12. https://cran.ma.imperial.ac.uk/src/contrib/Archive/NMF/
  13. https://mirror.las.iastate.edu/CRAN/src/contrib/
  14. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/NMF/
  15. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  16. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/NMF/
  17. https://stat.ethz.ch/CRAN/src/contrib/
  18. https://stat.ethz.ch/CRAN/src/contrib/Archive/NMF/
Collapse this list.

Number of commits found: 16

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.27
10 Feb 2024 19:06:41
commit hash: d3edbdc0114eb184fa96f8925e4c85da845240c9commit hash: d3edbdc0114eb184fa96f8925e4c85da845240c9commit hash: d3edbdc0114eb184fa96f8925e4c85da845240c9commit hash: d3edbdc0114eb184fa96f8925e4c85da845240c9 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
math/R-cran-NMF: Update version 0.26=>0.27

Changelog: https://cran.r-project.org/web/packages/NMF/
0.26
15 Dec 2023 12:55:44
commit hash: e841c23b1f29f5a798de620438f74371f3462a87commit hash: e841c23b1f29f5a798de620438f74371f3462a87commit hash: e841c23b1f29f5a798de620438f74371f3462a87commit hash: e841c23b1f29f5a798de620438f74371f3462a87 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
math/R-cran-NMF: Update version 0.21.0=>0.26

- Adopt port

Changelog: https://cran.r-project.org/web/packages/NMF/
0.21.0_4
07 May 2023 05:57:10
commit hash: 524b1f026bafd99d9ef55b2d02ab28dd96597887commit hash: 524b1f026bafd99d9ef55b2d02ab28dd96597887commit hash: 524b1f026bafd99d9ef55b2d02ab28dd96597887commit hash: 524b1f026bafd99d9ef55b2d02ab28dd96597887 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
math/R-cran-NMF: Mark BROKEN

- Mark BROKEN: does not build with the follwing error
    utils.cpp:118:20: error: use of undeclared identifier 'DOUBLE_EPS'
          double eps = sqrt(DOUBLE_EPS);
                            ^
- Drop maintainership

Reported by:	pkg-fallout
0.21.0_4
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.21.0_3
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.21.0_3
20 Jul 2022 14:22:24
commit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5da files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.21.0_3
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.21.0_3
05 May 2020 16:07:54
Revision:534095Original commit files touched by this commit
jrm search for other commits by this committer
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
0.21.0_2
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
0.21.0_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
0.21.0
23 Mar 2018 11:27:46
Revision:465347Original commit files touched by this commit
tota search for other commits by this committer
- Update to 0.21.0
- Fix LICENSE section
0.20.6_2
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
0.20.6_1
18 Jun 2017 18:09:17
Revision:443845Original commit files touched by this commit
dbn search for other commits by this committer
qa: add check for NO_ARCH

If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
0.20.6
01 Apr 2016 14:16:20
Revision:412348Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
0.20.6
11 Aug 2015 19:50:40
Revision:393969Original commit files touched by this commit
tota search for other commits by this committer
- Add new port: math/R-cran-NMF

  Provides a framework to perform Non-negative Matrix Factorization
  (NMF). The package implements a set of already published algorithms
  and seeding methods, and provides a framework to test, develop and
  plug new/custom algorithms. Most of the built-in algorithms have
  been optimized in C++, and the main interface function provides an
  easy way of performing parallel computations on multicore machines.

  WWW: https://cran.r-project.org/web/packages/NMF/

Number of commits found: 16