Commit History  (may be incomplete: see SVNWeb link above for full details) 
Date  By  Description 
15 Aug 2016 16:31:39 2.1.3

dbn 
math/Rcrancar: update to 2.13.
 Corrected documentation for mcPlots
 added id.location argument to showLabels to vary location of labels
 added fix for compatiblity with Rcmdr with missing data in several plotting
functions.
 deltaMethod() now reports confidence intervals.
 print.summary.Anova.mlm() has new SSP and SSPE arguments to determine
whether the corresponding matrices are printed (suggestion of Michael
Friendly).
 summary() and print() methods for Anova.mlm() can now report univariate
ANOVAs (suggestion and some code by Michael Friendly).
 added "value" and "vcov" attributes to objects returned by
linearHypothesis() (after suggestions by Liviu Andronic and Steven Yen).
 compareCoefs() now checks classes of models.
 small fixes/changes. 
01 Apr 2016 14:16:20 2.1.2

mat 
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.
With hat: portmgr
Sponsored by: Absolight 
28 Mar 2016 06:45:00 2.1.2

dbn 
math:Rcrancar: update to 2.12.
Changes:
 Add lmtest and sandwich as test dependencies.
ChangeLog:
 Modified scatter3d() so that plots can be embedded in HTML. 
13 Feb 2016 14:13:55 2.1.1

dbn 
math/Rcrancar: update to 2.11.
Changes:
* Use explicit pkgplist instead of autoplist. Using an explicit pkgplist
is more robust against "silent" errors or changes.
ChangeLog:
 influencePlot now returns Cook's distance, not its square root.
 Anova() now supports "coxme" objects (produced by coxme() in coxme package)
(request of Philipp Sprenger).
 Anova() now works via its default method with "vglm" objects produced by
functions in the VGAM package; and the default method of linearHypothesis()
again works with these objects (problem reported by Michael Friendly).
 Fixed Anova.coxph() so that it takes account of method (ties) argument (bug
reported by Karl Ove Hufthammer).
 Improvements to Anova.default() so that a wider variety of model classes are
accommodated (following request of Liviu Andronic.)
 dataEllipse() now throws an error if there are too few colors for the number
of groups (fixing bug reported by Ottorino Pantani).
 spreadLevelPlot.lm() now includes an optional smoother in addition to the
fitted straight line (suggestion of Michael Friendly).
 No longer import methods (as opposed to generics) directly from pbkrtest.
 Added axis.ticks argument to scatter3d() (code contributed by
David Winsemius). 
28 Nov 2015 14:30:41 2.1.0

dbn 
math/Rcrancar: update to 2.10
Changes:
 Remove port's broken and depreciated status
 Add two dependencies
 Add GPLv3 as dual license
 Update website URL
Change Log:
 New power family called skewPower has been added that can be used with the
Box Cox method with a few negative responses (joint work with Doug Hawkins).
Several functions modified to accomodate twoparameter power families.
 Fixed bug in Anova() for coxph models with clusters (reported by Jesus
Humberto Gomez ), due apparently to a change in coxph().
 Anova() Ftests for binomial and Poisson GLMs now changes
error.estimate="dispersion" to "pearson" as advertized (bug reported by
Will Petry).
 Improved behavior of aboveplot legends in scatterplot().
 Fixed sp() (bug reported by Cesar Rabak).
 Conforms to new CRAN requirements for package imports.
Reported by: tota@
PR: 203418
PR: 204587 
29 Oct 2015 17:24:01 2.0.25

tota 
 Postpone EXPIRATION_DATE to fix math/Rcrancar and
devel/Rcrancaret 
26 Sep 2015 21:39:11 2.0.25

antoine 
Deprecate ports broken for more than 6 months 
28 Mar 2015 17:40:36 2.0.25

antoine 
Mark BROKEN: missing dependency
===> Staging for Rcrancar2.0.25
===> Generating temporary packing list
ERROR: dependencies 'pbkrtest', 'quantreg' are not available for package 'car'
Reported by: pkgfallout 
22 Mar 2015 17:05:17 2.0.25

dbn 
math/Rcrancar: update to 2.025.
Changes to Version 2.025
* Fixed df check in linearHypothesis.default() (bug report by Pierre Chausse).
* Fixed bug when vcov. argument to Anova() is a function (reported by Liviu
Andronic).
* Now export .carEnv to avoid problem with update() in Boot() (reported by
Alan T. Arnholt).
Changes to Version 2.024
* Fixed broken URLs.
* Changed handling of .carEnv environment.
* Moved pbkrtest, quantreg, and mgcv from Suggests: to Imports:.
Changes to Version 2.023
* Modified ScatterplotSmoothers to add an 'offset' to the vertical axis of
spread smooths. This are required in the marginal model plot functions.
* Fixed labels on mcPlot with overlay=FALSE
* Check for 0 residual df and 0 residual deviance (within rounding) in Anova()
and linearHypothesis() (problem reported by Jonathan Love).
* Fixed model.matrix.lme and model.matrix.gls utility functions, and hence
Anova and vif, respectively, to work with models specified with formulas
supplied as objects (after problem noted by Gang Chen).
* Added Wong data set, used in mixedmodels appendix. 
05 Dec 2014 12:26:36 2.0.22

dbn 
Update math/Rcrancar to 2.022.
Changes to Version 2.022
* corrected bug in 'terms' argument in residualPlots, and other graphic
functions with a 'terms' argument
* added residual curvature tests for glm.nb
* mcPlot and mcPlot draw 'marginal/conditional' plots for lm objects. The
marginal plot is of the centered response versus a centered regressor; the
conditional plot is the corresponding addedvariable plot. The plots can be
overlaid or viewed sidebyside.
* added argument marginal.scale to avPlots to scale the addedvariable plot for
Y on XZ using the scale from the marginal plot of Y vs X ignoring X. The
default is FALSE, corresponding to using scaling to maximize resolution or
use xlim and ylim to set user scaling.
* Fixed bugs in Anova.survreg() that could affect types II, II tests, both Wald (Only the first 15 lines of the commit message are shown above ) 
10 Sep 2014 20:50:37 2.0.21_1

gerald 
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (exp runs)
Approved by: portmgr (implicit) 
23 Aug 2014 17:30:43 2.0.21

dbn 
Update math/Rcrancar to 2.021.
ChangeLog:
* residualPlot error when using 'type="rstudent" has been fixed.
* Minor change to "recode" documentation; improved error checking in
recode().
* Fixed a bug in gamLine with noncanonical links. (Thanks to Hani Christoph)
* Added has.intercept.multinom() to make Anova() work with multinom objects
fit to a dichotomous response (after bug report by Kristian Hovde Liland).
* Replaced vif.lm() with vif.default() to cover wider variety of models
(after question by Laura Rigg about gls models).
* Diagonal panels in scatterplotMatrix() (except for histograms) show
groups separately when plotted by groups (suggestion by Erich Neuwirth).
* Added vcov. argument to Anova.lm(). 
03 May 2014 09:41:29 2.0.20

dbn 
Update math/Rcrancar to 2.020.
ChangeLog:
o Added new id.method="r" to showLabels for labeling plots of residuals;
default id.method changed in residualPlots.
o Fixed handling of labels argument to outlierTest()
(bug report by Stephane Laurent).
o Accommodate numeric variables consisting entirely of NAs in recode()
(suggestion of Karl Ove Hufthammer).
o Prevent dataEllipse() from opening a graphics device when draw=FALSE
(fixing bug reported by Rafael Laboissiere).
o The functions makeHypothesis() and printHypothesis(), intended for
internal use, are exported so that they can be used in other packages
(request of Arne Henningsen).
o Small fixes. 
10 Mar 2014 20:55:22 2.0.19_3

gerald 
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.defaultversions.mk.
Part II, Bump PORTREVISIONs.
PR: 182136
Supported by: Christoph MoenchTegeder <cmt@burggraben.net> (fixing many ports)
Tested by: bdrewery (two exp runs) 
28 Dec 2013 10:28:41 2.0.19_2

dbn 
Convert Mk/bsd.cran.mk to the Uses framework.
PR: ports/184699
Reviewed by: bapt
Approved by: portmgr (bdrewery), wen (maintainer, timeout > 2 weeks) 
27 Nov 2013 18:56:44 2.0.19_2

dbn 
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka Rcran*).
Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.
Exprun: ports/184216
Reviewed by: bdrewery
Approved by: portsmgr, wen 
13 Nov 2013 08:19:35 2.0.19_2

bf 
Update math/R to 3.0.2 patched r64207 and math/RcranSuppDists to 1.19.1;
adjust dependent ports
Reviewed by: pfg, thierry, tota 
26 Oct 2013 00:52:36 2.0.19_1

gerald 
Update to libmpc version 1.0.1 which brings the following fixes:
 Switched to automake 1.11.6, see CVE20123386.
 #14669: Fixed extraction of CC from gmp.h.
 Fixed case of intermediate zero real or imaginary part in mpc_fma,
found by hydra with GMP_CHECK_RANDOMIZE=1346362345.
This is on top of the following changes from version 1.0
 Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
invariant sections) for the documentation.
 100% of all lines are covered by tests
 Renamed functions
. mpc_mul_2exp to mpc_mul_2ui
. mpc_div_2exp to mpc_div_2ui (Only the first 15 lines of the commit message are shown above ) 
06 Oct 2013 17:32:54 2.0.19

dbn 
Update math/Rcrancar to 2.0.19.
ChangeLog:
* fixed scoping problems in Boot, bootCase, and ncvTest
* added an argument to deltaMethod for passing arguments to get scoping right
when calling linearHypothesis in another function; other deltaMethod bugs fixed
* slight modification to documentation of Boot
* summary() method for "Anova.mlm" objects now returns an object, printed by a
corresponding print() method (adapting code contributed by Gabriel BaudBovy).
* added .merMod methods to Anova(), deltaMethod(), linearHypothesis(),
matchCoefs(), and unexported utilities df.residual() and has.intercept();
insured compatibility with nlme and CRAN and developments versions of lme4.
* added use argument to scatterplotMatrix() (suggstion of Antoine Lizee).
* export linearHypothesis.default() for use in other packages (suggestion of
Achim Zeileis).
* small changes and fixes. 
20 Sep 2013 20:55:06 2.0.18

bapt 
Add NO_STAGE all over the place in preparation for the staging support (cat:
math) 
17 Jun 2013 11:50:39 2.0.18

dbn 
Update math/Rcrancar to 2.018.
ChangeLog:
o Bug fix to boot with type="residual"
o Added densityPlot() function.
Approved by: eadler,bdrewery (mentors, implicit) 
28 May 2013 15:15:06 2.0.17_1

bf 
Update math/R to 3.0.1patched, and adjust dependent ports;
synchronize math/rpy with upstream repository
Reviewed by: wen
Approved by: wen, tota 
06 May 2013 18:10:36 2.0.17

dbn 
Update math/Rcrancar to 2.017.
ChangeLog:
o Add a variable to AMSsurvey.
o Fix to residualPlots to compute lack of fit tests with missing values and
glms.
o Fix to residualPlots with a 0/1 variable not declared a factor.
o Boxplot() now works properly with at argument passed to boxplot() via ...
(contribution of Steve Ellison).
o qqPlot.lm() now works with "aov" objects (fixing problem reported by
Thomas Burk).
o Small fixes to code and docs.
Approved by: eadler,bdrewery (mentors, implicit) 
07 Mar 2013 04:21:35 2.0.16_2

bf 
update math/R to 2.15.3, and adjust dependent ports 
20 Feb 2013 17:49:00 2.0.16_1

dbn 
Update math/Rcrancar to 2.016.
Changes to Version 2.016
o Fixed bug in printing of hypotheses by linearHypothesis(), where numeric
constants of the form 1.* or 1.* were printed incorrectly (reported by
Johannes Kutsam).
o Fixed a bug in showLabels() with multiple groups in the scatterplot() and
scatterplotMatrix() function
o linearHypothesisTest() now tolerates newlines and tabs in hypotheses
(suggestion of David HughJones).
o two bugs fixed in Boot() (found by David Pain) changed argument f to f.
in bootCase().
o summary.Boot(), confint.Boot() and hist.Boot() handle aliases correctly.
o Boxplot.formula() now accepts more than one conditioning variable
(suggestion of Christina Yassouridis).
o Small fixes.
Approved by: bdrewery (mentor) 
16 Jan 2013 20:15:07 2.0.15_1

dbn 
 Update to my new FreeBSD address
 Trim header
 Add myself as creator of devel/svn2git (see r272261)
Approved by: eadlerbdrewery (mentor) 
04 Jan 2013 17:51:39 2.0.15_1

bf 
update the R base ports to 2.15.2 and adjust dependent ports
Reviewed by: thierry, tota, wen 
20 Oct 2012 16:19:21 2.0.15

rakuco 
Update to 2.015.
PR: ports/172776
Submitted by: David Naylor <naylor.b.david@gmail.com> (maintainer)
Feature safe: yes 
01 Oct 2012 09:51:16 2.0.14

wen 
 Update to 2.014 [1]
 Convert to new Makefile format
PR: 172136 [1]
Submitted by: David Naylor <naylor.b.david@gmail.com> (maintainer) [1] 
26 Jun 2012 23:57:00 2.0.12_2

bf 
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports 
04 May 2012 20:56:15 2.0.12_1

bf 
 update math/Rcranpsych to 1.2.1 [1]
 update math/R to 2.15.0, and adjust dependent ports
 minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
flexible and allow CRAN ports to override it; add a regressiontest
target; set USE_FORTRAN to match math/R; remove some of the
redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS
Reviewed by: thierry, tota, wen
Approved by: D. Rue (maintainer) [1], wen [2] 
27 Mar 2012 20:08:25 2.0.12

rm 
 update to 2.012
PR: 166437
Submitted by: David Naylor <naylor.b.david at gmail dot com> (maintainer)
Feature safe: yes 
03 Mar 2012 16:59:36 2.0.11_3

bf 
update math/R to 2.14.2, and adjust dependent ports 
18 Jan 2012 23:04:08 2.0.11_2

bf 
update math/R to 2.14.1, and adjust dependent ports 
27 Nov 2011 07:02:15 2.0.11_1

bf 
update math/R to 2.14.0, math/Rcransp to 0.991, and adjust
dependent ports
Approved by: linimon (portmgr), thierry, tota, wen
Feature safe: yes 
15 Nov 2011 20:09:02 2.0.11

tota 
 Move PKGNAMEPREFIX defined in each Rcran related ports Makefile
to Mk/bsd.cran.mk
PR: ports/162238
Submitted by: tota (myself)
Approved by: wen (maintainer of Mk/bsd.cran.mk and many related ports),
David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
(maintainer of math/RcranRSvgDevice and math/Rcrancar),
Dan Rue <drue_AT_therub_DOT_org>
(maintainer of math/Rcranpsych, timeout > 2 weeks)
Feature safe: yes 
29 Oct 2011 18:20:43 2.0.11

tota 
 Update to 2.011
PR: ports/161918
Submitted by: David Naylor (maintainer) 
11 Oct 2011 14:19:46 2.0.10_2

bf 
update math/R to 2.13.2, and adjust dependent ports 
28 Jul 2011 04:19:58 2.0.10_1

bf 
update R to 2.13.1 [1], and adjust dependent ports (this
includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)
PR: 158947 [1]
Submitted by: wen ([1], independently) 
08 May 2011 05:11:41 2.0.10

bf 
update to 2.010
PR: 156858
Submitted by: David Naylor (maintainer) 
07 May 2011 03:29:59 1.2.16_3

bf 
 update to 2.13.0
 switch to the bundled Rblas and Rlapack by default (this
can be changed by setting BLAS and LAPACK) which favors
correctness in some corner cases over a slight performance
penalty; this will be revisited after the blas and lapack
updates
 replace the STATIC_LIBR option with a LIBR option (on
by default): if on, libR.a and libR.so are installed,
and R is linked to libR.so. Otherwise, R is static, and
no libRs are installed.
 remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
 enable the cairo and pango elements in the X11() graphics
device by default, controlled by new PANGOCAIRO option
 add a few small patches to dependent ports, bumping
PORTREVISION where necessary
PR: 153309 [1]
Approved by: thierry (rkward*), wen (rpy*, Rcran*) 
30 Apr 2011 07:59:13 1.2.16_2

bf 
Use DISTVERSION for CRAN ports with hyphenated versions
Approved by: wen 
20 Mar 2011 12:54:45 1.2.16_2

miwi 
 Get Rid MD5 support 
28 Feb 2011 16:03:13 1.2.16_2

bf 
 Update R to 2.12.2, a bugfix release
 Bump PORTREVISION of dependent ports,
where necessary
Approved by: makc, miwi (mentors, implicit) 
29 Jan 2011 16:53:21 1.2.16_1

bf 
 Update R to 2.12.1
 Bump PORTREVISION of
dependent ports
Approved by: makc, miwi (mentors, implicit)
pav (portmgr)
Feature safe: yes 
26 Sep 2010 07:59:14 1.2.16

tota 
 Add CRAN_Include_MAINTAINER tag to Mk/bsd.cran.mk
 Rename R_MOD to USE_R_MOD to be suitable for bsd.port.mk
 Remove math/Rcransm/files/bsd.cran.mk to complete the moving
Approved by: wen (via email) 
15 Aug 2010 02:48:05 1.2.16

tota 
 Use R_MOD_AUTOPLIST instead of pkgplist
Approved by: wen 
24 Apr 2010 07:35:44 1.2.16

wen 
 Update to 1.2.16
Approved by: maintainer(implicit) 
28 Mar 2010 06:47:48 1.2.13_4

dinoex 
 update to 1.4.1
Reviewed by: exp8 run on pointyhat
Supported by: miwi 
05 Feb 2010 11:46:55 1.2.13_3

dinoex 
 update to jpeg8 
25 Dec 2009 14:35:38 1.2.13_2

miwi 
 Fix build after math/R update
Submitted by: wen@, "b. f." <bf1783@googlemail.com> 
16 Oct 2009 14:00:34 1.2.13_1

wen 
 Change maintainer's email address
PR: ports/139655
Submitted by: David Naylor <naylor.b.david@gmail.com> (maintainer)
Approved by: miwi(mentor) 
31 Jul 2009 13:57:52 1.2.13_1

dinoex 
 bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by: edwin 
02 May 2009 17:33:29 1.2.13

wxs 
This package accompanies J. Fox, An R and SPLUS Companion to Applied
Regression, Sage, 2002. The package contains mostly functions for applied
regression, linear models, and generalized linear models, with an emphasis on
regression diagnostics, particularly graphical diagnostic methods. There are
also some utility functions. With some exceptions, I have tried not to duplicate
capabilities in the basic distribution of R, nor in widely used packages. Where
relevant, the functions in car are consistent with na.action = na.omit or
na.exclude.
WWW: http://cran.rproject.org/web/packages/car/index.html
PR: ports/133708
Submitted by: David Naylor <naylor.b.david@gmail.com> 