non port: math/R-cran-car/Makefile |
Number of commits found: 80 |
Sunday, 4 Jun 2023
|
13:23 Muhammad Moinur Rahman (bofh)
math/R-cran-car: Fix build
Approved by: portmgr (just-fix-it)
6732104 |
Tuesday, 25 Apr 2023
|
08:43 Wen Heping (wen)
math/R-cran-car: Update to 3.1.2
8f742d7 |
Sunday, 23 Apr 2023
|
09:09 Gerald Pfeifer (gerald)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
8d3e020 |
Thursday, 3 Nov 2022
|
00:19 Wen Heping (wen)
math/R-cran-car: Update to 3.1.1
e01b30d |
Wednesday, 7 Sep 2022
|
21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 20 Jul 2022
|
14:22 Tobias C. Berner (tcberner)
math: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Aaron Dalton <aaron@daltons.ca>
* Alessando Sagratini <ale_sagra@hotmail.com>
* Alex Dupre <ale@FreeBSD.org>
* Alexey Dokuchaev <danfe@FreeBSD.org>
* Amarendra Godbole <amarendra.godbole@gmail.com>
* Anders Nordby <anders@FreeBSD.org>
* Andreas Fehlner (fehlner@gmx.de)
* Andrew L. Neporada <andrew@chg.ru>
* Andrey <gugu@zoo.rambler.ru>
* Andrey Zakhvatov
* Anton Berezin <tobez@FreeBSD.org>
* Anton Berezin <tobez@plab.ku.dk>
* Anton Berezin <tobez@tobez.org>
* Anton Shterenlikht
* Anton Shterenlikht <mexas@bris.ac.uk>
* Bob Eager <bob@eager.cx>
* Charlie Kester <corky1951@comcast.net>
* Cheng-Lung Sung <clsung@FreeBSD.org>
* Cheng-Lung Sung <clsung@dragon2.net>
* Chris D. Faulhaber <jedgar@fxp.org>
* Christopher J. Ruwe
* Christopher Key <cjk32@cam.ac.uk>
* Chuck Hein <geekdude@pacbell.net>
* Cyrille Szymanski <cnszym@gmail.com>
* Dan Rue <drue@therub.org>
* Danilo Egea Gondolfo <danilo@FreeBSD.org>
* David Naylor <dbn@FreeBSD.org>
* David Naylor <naylor.b.david@gmail.com>
* Dereckson <dereckson@gmail.com>
* Devin Teske <dteske@FreeBSD.org>
* Dmitry Sivachenko <demon@FreeBSD.org>
* Dmitry Sivachenko <mitya@yandex-team.ru>
* Don Croyle <croyle@gelemna.org>
* Douglas K. Rand (rand@meridian-enviro.com)
* Dylan Simon <dylan@dylex.net>
* Edwin Groothuis <edwin@mavetju.org>
* Eijiro Shibusawa <ej-sib@ice.uec.ac.jp>
* Emanuel Haupt <ehaupt@FreeBSD.org>
* Eoin Lawless (eoin@maths.tcd.ie)
* Eric A. Griff <eagriff@global2000.net>
* Eric van Gyzen <vangyzen@stat.duke.edu>
* Ewgenij Gawrilow <gawrilow@math.tu-berlin.de>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Foxfair Hu <foxfair@FreeBSD.org>
* Frederic Han <han@math.jussieu.fr>
* Gabor Kovesdan <gabor@FreeBSD.org>
* Gea-Suan Lin <gslin@gslin.org>
* George Reid <greid@ukug.uk.freebsd.org>
* Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com>
* Greg Larkin <glarkin@FreeBSD.org>
* Guangyuan Yang <ygy@FreeBSD.org>
* Gustau Perez i Querol <gustau.perez@gmail.com>
* Heinz Tschabitscher
* Horia Racoviceanu <horia@racoviceanu.com>
* Hye-Shik Chang <perky@fallin.lv>
* Iblis Lin <iblis@hs.ntnu.edu.tw>
* Issei Suzuki <issei@jp.FreeBSD.ORG>
* Janni
* Jason Harris <jharris@widomaker.com>
* Javad Kouhi <javad.kouhi@gmail.com>
* Jean-Yves Lefort <jylefort@FreeBSD.org>
* Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
* Joe Marcus Clarke <marcus@FreeBSD.org>
* Johannes Dieterich <dieterich@ogolem.org>
* Johannes M Dieterich <jmd@FreeBSD.org>
* Johannes Meixner <johannes@perceivon.net>
* John Marino <marino@FreeBSD.org>
* Joseph Koshy <jkoshy@FreeBSD.org>
* Ju Pengfei <ju.pengfei@gmail.com>
* Jukka A. Ukkonen <jau@iki.fi>
* Kay Lehmann <kay_lehmann@web.de>
* Kevin Lo <kevlo@FreeBSD.org>
* Klaus T. Aehlig <aehlig@linta.de>
* Kubilay Kocak <koobs@FreeBSD.org>
* Kurt Jaeger <fbsd-ports@opsec.eu>
* Lars Engels <lme@FreeBSD.org>
* Lars Koeller <Lars.Koeller@Uni-Bielefeld.DE>
* Lars Koeller <Lars.Koeller@Uni-Bielefeld.de>
* Li-Wen Hsu <lwhsu@FreeBSD.org>
* Li-Wen Hsu <lwhsu@lwhsu.org>
* M. L. Dodson, <bdodson@scms.utmb.edu>
* Maho Nakata <maho@FreeBSD.org>
* Mario S F Ferreira <lioux@FreeBSD.org>
* Mario S F Ferreira <lioux@linf.unb.br> et al.
* Mario Sergio Fujikawa Ferreira <lioux@FreeBSD.org>
* Mark Felder <feld@FreeBSD.org>
* Mark R V Murray <markm@FreeBSD.org>
* Martin Matuska <mm@FreeBSD.org>
* Matthew Seaman <matthew@FreeBSD.org>
* Maurice Castro <maurice@serc.rmit.edu.au>
* Maxim Sobolev <sobomax@FreeBSD.org>
* Maxime Henrion <mux@FreeBSD.org>
* Michael Haro <mharo@FreeBSD.org>
* Michael Johnson <ahze@FreeBSD.org>
* Michael Johnson <ahze@ahze.net>
* Michael Neumann <mneumann@ntecs.de>
* Muhammad Moinur Rahmanh <5u623l20@gmail.com>
* NAKATA Maho <chat95@mbox.kyoto-inet.or.jp>
* NAKATA, Maho <maho@FreeBSD.org>
* Nakata Maho <maho@FreeBSD.org>
* Nicola Vitale <nivit@email.it>
* Olivier Duchateau
* Pedro F. Giffuni
* Pedro F. Giffuni <giffunip@asme.org>
* Pedro Giffuni
* Pedro Giffuni <giffunip@asme.org>
* Pedro Giffuni <pfg@FreeBSD.org>
* Peter Pentchev <roam@FreeBSD.org>
* Philip Paeps <philip@FreeBSD.org>
* Pierre-Paul Lavoie <ppl@nbnet.nb.ca>
* Pietro Cerutti <gahr@FreeBSD.org>
* Piotr Rybicki <meritus@innervision.pl>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Rainer Hurling <rhurlin@gwdg.de>
* Robert Jenssen
* Robin Schilham
* Rod Taylor <ports@rbt.ca>
* Roman Neuhauser <neuhauser@sigpipe.cz>
* Sander Vesik <sander@haldjas.folklore.ee>
* Scott Flatman <sf@dsinw.com>
* Seamus Venasse <svenasse@polaris.ca>
* Sergey A. Osokin <osa@FreeBSD.org>
* Sergey Akifyev <asa@agava.com>
* Sergey Akifyev <asa@gascom.ru>
* Sergey Skvortsov <skv@FreeBSD.org>
* Sergey Skvortsov <skv@protey.ru>
* Shell Hung <shell@shellhung.org>
* Shin-ya MURAKAMI <murashin@gfd-dennou.org>
* Stas Timokhin <devel@stasyan.com>
* Stefan A. Deutscher (sad@mailaps.org)
* Stefan Esser <se@StefanEsser.FreeBSD.org>
* Stephen Montgomery-Smith <stephen@FreeBSD.edu>
* Stephen Montgomery-Smith <stephen@FreeBSD.org>
* Stephen Montgomery-Smith <stephen@math.missouri.edu>
* Stephen Montgomery-Smith <stephen@missouri.edu>
* Steve Wills <steve@mouf.net>
* Steve Wills <swills@FreeBSD.org>
* Steven Kreuzer <skreuzer@FreeBSD.org>
* Steven Kreuzer <skreuzer@f2o.org>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* TAKATSU Tomonari <tota@FreeBSD.org>
* Thierry Thomas (<thierry@pompo.net>)
* Thierry Thomas <thierry@pompo.net>
* Thomas Gellekum <tg@FreeBSD.org>
* Thomas Sandford <freebsduser@paradisegreen.co.uk>
* Timothy Bourke <timbob@bigpond.com>
* Tony Maher
* Tz-Huan Huang <tzhuan@csie.org>
* Vsevolod Stakhov <vsevolod@FreeBSD.org>
* Vsevolod Stakhov <vsevolod@highsecure.ru>
* Waitman Gobble <waitman@waitman.net>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Will Andrews <andrews@technologist.com>
* Yi-Hsuan Hsin <mhsin@mhsin.org>
* Ying-Chieh Liao <ijliao@FreeBSD.org>
* Yinghong.Liu <relaxbsd@gmail.com>
* Yoshiaki UCHIKAWA <yoshiaki@kt.rim.or.jp>
* Yukihiro Nakai <Nakai@technologist.com>
* Yuri Victorovich <yuri@FreeBSD.org>
* Yuri Victorovich <yuri@rawbw.com>
* Yuri Victorovich <yuri@tsoft.com>
* Zhen REN <bg1tpt@gmail.com>
* amir.husaini@gmail.com
* arved
* asami
* b.f. <bf@FreeBSD.org>
* bart <lbartoletti@FreeBSD.org>
* bauerm
* bf <bf2006a@yahoo.com>
* bf <bf@FreeBSD.org>
* bf@FreeBSD.org
* bremner@unb.ca
* chinsan
* chuckr@FreeBSD.org
* dawe <daweonline@gmail.com>
* dbader@ece.unm.edu
* dd
* demon@FreeBSD.org
* dikshie
* eserte
* fenner
* gahr
* giffunip
* gmarco@giovannelli.it
* gurkan@phys.ethz.ch
* ijliao
* janek@gaja.ipan.lublin.pl
* jhs@berklix.com / asami (original)
* jmz
* js@jeannot.org
* keith@FreeBSD.org
* ljo
* mr
* nobu@rd.isac.co.jp
* pauls@utdallas.edu
* pusto@web.de
* reg@shale.csir.co.za
* rfarmer@predatorlabs.net
* stephen@FreeBSD.org
* thierry@pompo.net
* tobez
* will
* # Created by Matthias Fechner <mfechner@FreeBSD.org>
With hat: portmgr
f53eb28 |
Wednesday, 22 Jun 2022
|
08:38 Wen Heping (wen)
math/R-cran-car: Update to 3.1.0
6064318 |
Saturday, 7 May 2022
|
07:00 Wen Heping (wen)
math/R-cran-car: Update to 3.0.13
dabad2b |
Monday, 13 Dec 2021
|
02:45 Wen Heping (wen)
math/R-cran-car: Update to 3.0.12
d772687 |
Monday, 12 Jul 2021
|
11:06 Wen Heping (wen)
math/R-cran-car: Update to 3.0.11
d115f9a |
Tuesday, 6 Apr 2021
|
14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Wednesday, 7 Oct 2020
|
10:33 wen
- Update to 3.0.10
|
Saturday, 26 Sep 2020
|
09:33 wen
- Update to 3.0.9
|
Tuesday, 9 Jun 2020
|
06:24 wen
- Update to 3.0.8
|
Tuesday, 5 May 2020
|
16:07 jrm
math/R: Update to version 4.0.0
Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html
Also bump PORTREVISION of ports that depend on math/R.
Submitted by: wen (in part)
Reviewed by: jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision: https://reviews.freebsd.org/D24572
|
Friday, 20 Mar 2020
|
08:59 wen
- Update to 3.0.7
|
Saturday, 22 Feb 2020
|
10:50 wen
- Update to 3.0.6
- Take maintainership
|
Monday, 3 Feb 2020
|
20:21 rene
Return dbn's ports to the pool after safekeeping his commit bit.
|
Friday, 26 Jul 2019
|
20:46 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
|
Wednesday, 12 Dec 2018
|
01:35 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
|
Wednesday, 24 Oct 2018
|
16:31 dbn
math/R-cran-car: updated to version 3.0-2
- removed PORTREVISION due to version bump
- add new run dependencies:
- astro/R-cran-maptools
- devel/R-cran-abind
- math/R-cran-carData
- math/R-cran-lme4
- textproc/R-cran-rio
- remove unused test dependency:
- math/R-cran-lme4
- update description to align with CRAN package
- update website URL to align with CRAN package
- changelog:
- This version deals with a technical problem (reported by Don van den
Bergh), implementing a solution suggested by Brian Ripley: Rather than
importing utils::askYesNo(), which is unavailable before R 3.5.0, a
local unexported copy is supplied in the car package, to be removed
after version 3.0-2.
Generated by: portcran (0.1.9)
|
Saturday, 10 Mar 2018
|
17:46 gerald
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
|
Monday, 18 Dec 2017
|
07:32 dbn
math/R-cran-car: updated to version 2.1-6
- remove unused test dependencies:
- math/R-cran-nloptr
- changelog:
- Made several functions compatible with vcov() in R-devel (3.5.0).
Generated by: portcran (0.1.6)
|
Sunday, 9 Jul 2017
|
10:07 dbn
math/R-cran-car: updated to version 2.1-5
- no changelog provided
Generated by: portcran (0.1.5)
|
Sunday, 18 Jun 2017
|
18:09 dbn
qa: add check for NO_ARCH
If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,
Changes to ports:
- Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
removed.
- Ports that have elf(5) payloads have had those files added to
NO_ARCH_IGNORE.
- R-cran ports that do not set USES=cran:compiles have NO_ARCH set,
PR: 218976
Reviewed by: antoine, mat
Approved by: portmgr
|
Tuesday, 20 Dec 2016
|
09:56 dbn
math/R-cran-car: updated to version 2.1-4
- updated comment to align with CRAN package
- updated license to align with CRAN package
- add new test dependencies:
- math/R-cran-MatrixModels
- math/R-cran-SparseM
- math/R-cran-lme4
- math/R-cran-nloptr
- math/R-cran-survey
- set NO_ARCH as port does not compile
Generated by: portcran (0.1.3)
|
Saturday, 19 Nov 2016
|
12:57 dbn
Convert R-cran ports to auto-plist.
These ports did not properly handle the DOCS options (in math/R).
|
Monday, 15 Aug 2016
|
16:31 dbn
math/R-cran-car: update to 2.1-3.
- Corrected documentation for mcPlots
- added id.location argument to showLabels to vary location of labels
- added fix for compatiblity with Rcmdr with missing data in several plotting
functions.
- deltaMethod() now reports confidence intervals.
- print.summary.Anova.mlm() has new SSP and SSPE arguments to determine
whether the corresponding matrices are printed (suggestion of Michael
Friendly).
- summary() and print() methods for Anova.mlm() can now report univariate
ANOVAs (suggestion and some code by Michael Friendly).
- added "value" and "vcov" attributes to objects returned by
linearHypothesis() (after suggestions by Liviu Andronic and Steven Yen).
- compareCoefs() now checks classes of models.
- small fixes/changes.
|
Friday, 1 Apr 2016
|
14:16 mat
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.
With hat: portmgr
Sponsored by: Absolight
|
Monday, 28 Mar 2016
|
06:45 dbn
math:R-cran-car: update to 2.1-2.
Changes:
- Add lmtest and sandwich as test dependencies.
ChangeLog:
- Modified scatter3d() so that plots can be embedded in HTML.
|
Saturday, 13 Feb 2016
|
14:13 dbn
math/R-cran-car: update to 2.1-1.
Changes:
* Use explicit pkg-plist instead of autoplist. Using an explicit pkg-plist
is more robust against "silent" errors or changes.
ChangeLog:
- influencePlot now returns Cook's distance, not its square root.
- Anova() now supports "coxme" objects (produced by coxme() in coxme package)
(request of Philipp Sprenger).
- Anova() now works via its default method with "vglm" objects produced by
functions in the VGAM package; and the default method of linearHypothesis()
again works with these objects (problem reported by Michael Friendly).
- Fixed Anova.coxph() so that it takes account of method (ties) argument (bug
reported by Karl Ove Hufthammer).
- Improvements to Anova.default() so that a wider variety of model classes are
accommodated (following request of Liviu Andronic.)
- dataEllipse() now throws an error if there are too few colors for the number
of groups (fixing bug reported by Ottorino Pantani).
- spreadLevelPlot.lm() now includes an optional smoother in addition to the
fitted straight line (suggestion of Michael Friendly).
- No longer import methods (as opposed to generics) directly from pbkrtest.
- Added axis.ticks argument to scatter3d() (code contributed by
David Winsemius).
|
Saturday, 28 Nov 2015
|
14:30 dbn
math/R-cran-car: update to 2.1-0
Changes:
- Remove port's broken and depreciated status
- Add two dependencies
- Add GPLv3 as dual license
- Update website URL
Change Log:
- New power family called skewPower has been added that can be used with the
Box Cox method with a few negative responses (joint work with Doug Hawkins).
Several functions modified to accomodate two-parameter power families.
- Fixed bug in Anova() for coxph models with clusters (reported by Jesus
Humberto Gomez ), due apparently to a change in coxph().
- Anova() F-tests for binomial and Poisson GLMs now changes
error.estimate="dispersion" to "pearson" as advertized (bug reported by
Will Petry).
- Improved behavior of above-plot legends in scatterplot().
- Fixed sp() (bug reported by Cesar Rabak).
- Conforms to new CRAN requirements for package imports.
Reported by: tota@
PR: 203418
PR: 204587
|
Thursday, 29 Oct 2015
|
17:24 tota
- Postpone EXPIRATION_DATE to fix math/R-cran-car and
devel/R-cran-caret
|
Saturday, 26 Sep 2015
|
21:39 antoine
Deprecate ports broken for more than 6 months
|
Saturday, 28 Mar 2015
|
17:40 antoine
Mark BROKEN: missing dependency
===> Staging for R-cran-car-2.0.25
===> Generating temporary packing list
ERROR: dependencies 'pbkrtest', 'quantreg' are not available for package 'car'
Reported by: pkg-fallout
|
Sunday, 22 Mar 2015
|
17:05 dbn
math/R-cran-car: update to 2.0-25.
Changes to Version 2.0-25
* Fixed df check in linearHypothesis.default() (bug report by Pierre Chausse).
* Fixed bug when vcov. argument to Anova() is a function (reported by Liviu
Andronic).
* Now export .carEnv to avoid problem with update() in Boot() (reported by
Alan T. Arnholt).
Changes to Version 2.0-24
* Fixed broken URLs.
* Changed handling of .carEnv environment.
* Moved pbkrtest, quantreg, and mgcv from Suggests: to Imports:.
Changes to Version 2.0-23
* Modified ScatterplotSmoothers to add an 'offset' to the vertical axis of
spread smooths. This are required in the marginal model plot functions.
* Fixed labels on mcPlot with overlay=FALSE
* Check for 0 residual df and 0 residual deviance (within rounding) in Anova()
and linearHypothesis() (problem reported by Jonathan Love).
* Fixed model.matrix.lme and model.matrix.gls utility functions, and hence
Anova and vif, respectively, to work with models specified with formulas
supplied as objects (after problem noted by Gang Chen).
* Added Wong data set, used in mixed-models appendix.
|
Friday, 5 Dec 2014
|
12:26 dbn
Update math/R-cran-car to 2.0-22.
Changes to Version 2.0-22
* corrected bug in 'terms' argument in residualPlots, and other graphic
functions with a 'terms' argument
* added residual curvature tests for glm.nb
* mcPlot and mcPlot draw 'marginal/conditional' plots for lm objects. The
marginal plot is of the centered response versus a centered regressor; the
conditional plot is the corresponding added-variable plot. The plots can be
overlaid or viewed side-by-side.
* added argument marginal.scale to avPlots to scale the added-variable plot for
Y on X|Z using the scale from the marginal plot of Y vs X ignoring X. The
default is FALSE, corresponding to using scaling to maximize resolution or
use xlim and ylim to set user scaling.
* Fixed bugs in Anova.survreg() that could affect types II, II tests, both Wald
and LR, and one similar bug in linearHypothesis.survreg().
* Replaced calls to require() with requireNamespace() where possible
(suggestion of Brian Ripley).
* The following functions now produce warnings rather than errors when there
are empty groups: scatterplot(), scatterplotMatrix(),scatter3d(),
densityPlot().
* Corrected name of "Blackmoor" dataset to "Blackmore".
* Added KosteckiDillon migraines dataset (contributed by Georges Monette).
* introduced linearHypothesis.rlm() for rlm models (suggestion of Matthieu
Stigler).
* Small bug fixes/improvements.
|
Wednesday, 10 Sep 2014
|
20:50 gerald
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit)
|
Saturday, 23 Aug 2014
|
17:30 dbn
Update math/R-cran-car to 2.0-21.
ChangeLog:
* residualPlot error when using 'type="rstudent" has been fixed.
* Minor change to "recode" documentation; improved error checking in
recode().
* Fixed a bug in gamLine with non-canonical links. (Thanks to Hani Christoph)
* Added has.intercept.multinom() to make Anova() work with multinom objects
fit to a dichotomous response (after bug report by Kristian Hovde Liland).
* Replaced vif.lm() with vif.default() to cover wider variety of models
(after question by Laura Rigg about gls models).
* Diagonal panels in scatterplotMatrix() (except for histograms) show
groups separately when plotted by groups (suggestion by Erich Neuwirth).
* Added vcov. argument to Anova.lm().
|
Saturday, 3 May 2014
|
09:41 dbn
Update math/R-cran-car to 2.0-20.
ChangeLog:
o Added new id.method="r" to showLabels for labeling plots of residuals;
default id.method changed in residualPlots.
o Fixed handling of labels argument to outlierTest()
(bug report by Stephane Laurent).
o Accommodate numeric variables consisting entirely of NAs in recode()
(suggestion of Karl Ove Hufthammer).
o Prevent dataEllipse() from opening a graphics device when draw=FALSE
(fixing bug reported by Rafael Laboissiere).
o The functions makeHypothesis() and printHypothesis(), intended for
internal use, are exported so that they can be used in other packages
(request of Arne Henningsen).
o Small fixes.
|
Monday, 10 Mar 2014
|
20:55 gerald
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.
Part II, Bump PORTREVISIONs.
PR: 182136
Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by: bdrewery (two -exp runs)
|
Saturday, 28 Dec 2013
|
10:28 dbn
Convert Mk/bsd.cran.mk to the Uses framework.
PR: ports/184699
Reviewed by: bapt
Approved by: portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
|
Wednesday, 27 Nov 2013
|
18:56 dbn
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).
Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.
Exp-run: ports/184216
Reviewed by: bdrewery
Approved by: portsmgr, wen
|
Wednesday, 13 Nov 2013
|
08:19 bf
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports
Reviewed by: pfg, thierry, tota
|
Saturday, 26 Oct 2013
|
00:52 gerald
Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386.
- #14669: Fixed extraction of CC from gmp.h.
- Fixed case of intermediate zero real or imaginary part in mpc_fma,
found by hydra with GMP_CHECK_RANDOMIZE=1346362345.
This is on top of the following changes from version 1.0
- Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
invariant sections) for the documentation.
- 100% of all lines are covered by tests
- Renamed functions
. mpc_mul_2exp to mpc_mul_2ui
. mpc_div_2exp to mpc_div_2ui
- 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
- Removed compatibility with K&R compilers, which was untestable due
to lack of such compilers.
- New functions
. mpc_log10
. mpc_mul_2si, mpc_div_2si
- Speed-ups
. mpc_fma
- Bug fixes
. mpc_div and mpc_norm now return a value indicating the effective
rounding direction, as the other functions.
. mpc_mul, mpc_sqr and mpc_norm now return correct results even if
there are over- or underflows during the computation.
. mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
infinite part and equals output variable is corrected.
. mpc_fr_sub: Wrong return value for imaginary part is corrected.
Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.
Bump PORTREVISIONS of all dependent ports.
PR: 183141
Approved by: portmgr (bdrewery)
|
Sunday, 6 Oct 2013
|
17:32 dbn
Update math/R-cran-car to 2.0.19.
ChangeLog:
* fixed scoping problems in Boot, bootCase, and ncvTest
* added an argument to deltaMethod for passing arguments to get scoping right
when calling linearHypothesis in another function; other deltaMethod bugs fixed
* slight modification to documentation of Boot
* summary() method for "Anova.mlm" objects now returns an object, printed by a
corresponding print() method (adapting code contributed by Gabriel Baud-Bovy).
* added .merMod methods to Anova(), deltaMethod(), linearHypothesis(),
matchCoefs(), and unexported utilities df.residual() and has.intercept();
insured compatibility with nlme and CRAN and developments versions of lme4.
* added use argument to scatterplotMatrix() (suggstion of Antoine Lizee).
* export linearHypothesis.default() for use in other packages (suggestion of
Achim Zeileis).
* small changes and fixes.
|
Friday, 20 Sep 2013
|
20:55 bapt
Add NO_STAGE all over the place in preparation for the staging support (cat:
math)
|
Monday, 17 Jun 2013
|
11:50 dbn
Update math/R-cran-car to 2.0-18.
ChangeLog:
o Bug fix to boot with type="residual"
o Added densityPlot() function.
Approved by: eadler,bdrewery (mentors, implicit)
|
Tuesday, 28 May 2013
|
15:15 bf
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository
Reviewed by: wen
Approved by: wen, tota
|
Monday, 6 May 2013
|
18:10 dbn
Update math/R-cran-car to 2.0-17.
ChangeLog:
o Add a variable to AMSsurvey.
o Fix to residualPlots to compute lack of fit tests with missing values and
glms.
o Fix to residualPlots with a 0/1 variable not declared a factor.
o Boxplot() now works properly with at argument passed to boxplot() via ...
(contribution of Steve Ellison).
o qqPlot.lm() now works with "aov" objects (fixing problem reported by
Thomas Burk).
o Small fixes to code and docs.
Approved by: eadler,bdrewery (mentors, implicit)
|
Thursday, 7 Mar 2013
|
04:21 bf
update math/R to 2.15.3, and adjust dependent ports
|
Wednesday, 20 Feb 2013
|
17:49 dbn
Update math/R-cran-car to 2.0-16.
Changes to Version 2.0-16
o Fixed bug in printing of hypotheses by linearHypothesis(), where numeric
constants of the form 1.* or -1.* were printed incorrectly (reported by
Johannes Kutsam).
o Fixed a bug in showLabels() with multiple groups in the scatterplot() and
scatterplotMatrix() function
o linearHypothesisTest() now tolerates newlines and tabs in hypotheses
(suggestion of David Hugh-Jones).
o two bugs fixed in Boot() (found by David Pain) changed argument f to f.
in bootCase().
o summary.Boot(), confint.Boot() and hist.Boot() handle aliases correctly.
o Boxplot.formula() now accepts more than one conditioning variable
(suggestion of Christina Yassouridis).
o Small fixes.
Approved by: bdrewery (mentor)
|
Wednesday, 16 Jan 2013
|
20:15 dbn
- Update to my new FreeBSD address
- Trim header
- Add myself as creator of devel/svn2git (see r272261)
Approved by: eadler|bdrewery (mentor)
|
Friday, 4 Jan 2013
|
17:51 bf
update the R base ports to 2.15.2 and adjust dependent ports
Reviewed by: thierry, tota, wen
|
Saturday, 20 Oct 2012
|
16:19 rakuco
Update to 2.0-15.
PR: ports/172776
Submitted by: David Naylor <naylor.b.david@gmail.com> (maintainer)
Feature safe: yes
|
Monday, 1 Oct 2012
|
09:51 wen
- Update to 2.0-14 [1]
- Convert to new Makefile format
PR: 172136 [1]
Submitted by: David Naylor <naylor.b.david@gmail.com> (maintainer) [1]
|
Tuesday, 26 Jun 2012
|
23:57 bf
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
|
Friday, 4 May 2012
|
20:56 bf
- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
flexible and allow CRAN ports to override it; add a regression-test
target; set USE_FORTRAN to match math/R; remove some of the
redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS
Reviewed by: thierry, tota, wen
Approved by: D. Rue (maintainer) [1], wen [2]
|
Tuesday, 27 Mar 2012
|
20:08 rm
- update to 2.0-12
PR: 166437
Submitted by: David Naylor <naylor.b.david at gmail dot com> (maintainer)
Feature safe: yes
|
Saturday, 3 Mar 2012
|
16:59 bf
update math/R to 2.14.2, and adjust dependent ports
|
Wednesday, 18 Jan 2012
|
23:04 bf
update math/R to 2.14.1, and adjust dependent ports
|
Sunday, 27 Nov 2011
|
07:02 bf
update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports
Approved by: linimon (portmgr), thierry, tota, wen
Feature safe: yes
|
Tuesday, 15 Nov 2011
|
20:09 tota
- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
to Mk/bsd.cran.mk
PR: ports/162238
Submitted by: tota (myself)
Approved by: wen (maintainer of Mk/bsd.cran.mk and many related ports),
David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
(maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
Dan Rue <drue_AT_therub_DOT_org>
(maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe: yes
|
Saturday, 29 Oct 2011
|
18:20 tota
- Update to 2.0-11
PR: ports/161918
Submitted by: David Naylor (maintainer)
|
Tuesday, 11 Oct 2011
|
14:19 bf
update math/R to 2.13.2, and adjust dependent ports
|
Thursday, 28 Jul 2011
|
04:19 bf
update R to 2.13.1 [1], and adjust dependent ports (this
includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)
PR: 158947 [1]
Submitted by: wen ([1], independently)
|
Sunday, 8 May 2011
|
05:11 bf
update to 2.0-10
PR: 156858
Submitted by: David Naylor (maintainer)
|
Saturday, 7 May 2011
|
03:29 bf
- update to 2.13.0
- switch to the bundled Rblas and Rlapack by default (this
can be changed by setting BLAS and LAPACK) which favors
correctness in some corner cases over a slight performance
penalty; this will be revisited after the blas and lapack
updates
- replace the STATIC_LIBR option with a LIBR option (on
by default): if on, libR.a and libR.so are installed,
and R is linked to libR.so. Otherwise, R is static, and
no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
PORTREVISION where necessary
PR: 153309 [1]
Approved by: thierry (rkward*), wen (rpy*, R-cran-*)
|
Saturday, 30 Apr 2011
|
07:59 bf
Use DISTVERSION for CRAN ports with hyphenated versions
Approved by: wen
|
Monday, 28 Feb 2011
|
16:03 bf
- Update R to 2.12.2, a bugfix release
- Bump PORTREVISION of dependent ports,
where necessary
Approved by: makc, miwi (mentors, implicit)
|
Saturday, 29 Jan 2011
|
16:53 bf
- Update R to 2.12.1
- Bump PORTREVISION of
dependent ports
Approved by: makc, miwi (mentors, implicit)
pav (portmgr)
Feature safe: yes
|
Sunday, 26 Sep 2010
|
07:59 tota
- Add CRAN_Include_MAINTAINER tag to Mk/bsd.cran.mk
- Rename R_MOD to USE_R_MOD to be suitable for bsd.port.mk
- Remove math/R-cran-sm/files/bsd.cran.mk to complete the moving
Approved by: wen (via e-mail)
|
Sunday, 15 Aug 2010
|
02:48 tota
- Use R_MOD_AUTOPLIST instead of pkg-plist
Approved by: wen
|
Saturday, 24 Apr 2010
|
07:35 wen
- Update to 1.2.16
Approved by: maintainer(implicit)
|
Sunday, 28 Mar 2010
|
06:47 dinoex
- update to 1.4.1
Reviewed by: exp8 run on pointyhat
Supported by: miwi
|
Friday, 5 Feb 2010
|
11:46 dinoex
- update to jpeg-8
|
Friday, 25 Dec 2009
|
14:35 miwi
- Fix build after math/R update
Submitted by: wen@, "b. f." <bf1783@googlemail.com>
|
Friday, 16 Oct 2009
|
14:00 wen
- Change maintainer's email address
PR: ports/139655
Submitted by: David Naylor <naylor.b.david@gmail.com> (maintainer)
Approved by: miwi(mentor)
|
Friday, 31 Jul 2009
|
13:57 dinoex
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by: edwin
|
Saturday, 2 May 2009
|
17:33 wxs
This package accompanies J. Fox, An R and S-PLUS Companion to Applied
Regression, Sage, 2002. The package contains mostly functions for applied
regression, linear models, and generalized linear models, with an emphasis on
regression diagnostics, particularly graphical diagnostic methods. There are
also some utility functions. With some exceptions, I have tried not to duplicate
capabilities in the basic distribution of R, nor in widely used packages. Where
relevant, the functions in car are consistent with na.action = na.omit or
na.exclude.
WWW: http://cran.r-project.org/web/packages/car/index.html
PR: ports/133708
Submitted by: David Naylor <naylor.b.david@gmail.com>
|
Number of commits found: 80 |