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Port details
R-cran-coda 0.16.1_6 math on this many watch lists=0 search for ports that depend on this port
Output analysis and diagnostics for MCMC
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 17 Jan 2011 07:57:47
License: not specified in port


R-cran-coda is a R module for output analysis and diagnostics for
Markov Chain Monte Carlo simulations.

WWW: http://cran.case.edu/web/packages/coda/index.html
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Build:
  1. math/R
Required To Run:
  1. math/R

This port is required by:

for Run * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

To install the port: cd /usr/ports/math/R-cran-coda/ && make install clean
To add the package: pkg install math/R-cran-coda


Configuration Options
     No options to configure

Master Sites:
  1. http://cran.cnr.berkeley.edu/src/contrib/
  2. http://cran.cnr.berkeley.edu/src/contrib/Archive/coda/
  3. http://cran.md.tsukuba.ac.jp/src/contrib/
  4. http://cran.md.tsukuba.ac.jp/src/contrib/Archive/coda/
  5. http://cran.ms.unimelb.edu.au/src/contrib/
  6. http://cran.ms.unimelb.edu.au/src/contrib/Archive/coda/
  7. http://cran.rakanu.com/src/contrib/
  8. http://cran.rakanu.com/src/contrib/Archive/coda/
  9. http://cran.stat.unipd.it/src/contrib/
  10. http://cran.stat.unipd.it/src/contrib/Archive/coda/
  11. http://cran.univ-lyon1.fr/src/contrib/
  12. http://cran.univ-lyon1.fr/src/contrib/Archive/coda/
  13. http://distcache.FreeBSD.org/ports-distfiles/
  14. http://ftp.ctex.org/mirrors/CRAN/src/contrib/
  15. http://ftp.ctex.org/mirrors/CRAN/src/contrib/Archive/coda/
  16. http://ftp5.gwdg.de/pub/misc/cran/src/contrib/
  17. http://ftp5.gwdg.de/pub/misc/cran/src/contrib/Archive/coda/
  18. http://mirror.its.dal.ca/cran/src/contrib/
  19. http://mirror.its.dal.ca/cran/src/contrib/Archive/coda/
  20. http://mirrors.dotsrc.org/cran/src/contrib/
  21. http://mirrors.dotsrc.org/cran/src/contrib/Archive/coda/
  22. http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/
  23. http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/Archive/coda/

Number of commits found: 29

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
10 Sep 2014 20:50:37
Original commit files touched by this commit  0.16.1_6
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
10 Mar 2014 20:55:22
Original commit files touched by this commit  0.16.1_5
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
28 Dec 2013 10:28:41
Original commit files touched by this commit  0.16.1_4
Revision:337846
dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
27 Nov 2013 18:56:44
Original commit files touched by this commit  0.16.1_4
Revision:335044
dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
13 Nov 2013 08:19:35
Original commit files touched by this commit  0.16.1_4
Revision:333659
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
26 Oct 2013 00:52:36
Original commit files touched by this commit  0.16.1_3
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 20:55:06
Original commit files touched by this commit  0.16.1_2
Revision:327746
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
math)
28 May 2013 15:15:06
Original commit files touched by this commit  0.16.1_2
Revision:319316
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
07 Mar 2013 04:21:35
Original commit files touched by this commit  0.16.1_1
Revision:313562
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
15 Jan 2013 06:24:08
Original commit files touched by this commit  0.16.1
Revision:310428
wen search for other commits by this committer
- Update to 0.16.1
04 Jan 2013 17:51:39
Original commit files touched by this commit  0.15.2_1
Revision:309935
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
01 Oct 2012 09:46:10
Original commit files touched by this commit  0.15.2
Revision:305101
wen search for other commits by this committer
- Update to 0.15-2
- Convert to new Makefile format
24 Jul 2012 05:06:44
Original commit files touched by this commit  0.15.1
wen search for other commits by this committer
- Update to 0.15.1
26 Jun 2012 23:57:00
Original commit files touched by this commit  0.14.7_2
bf search for other commits by this committer
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
04 May 2012 20:56:15
Original commit files touched by this commit  0.14.7_1
bf search for other commits by this committer
- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]
09 Apr 2012 02:33:03
Original commit files touched by this commit  0.14.7
wen search for other commits by this committer
- Update to 0.14.7

Feature safe:   yes
03 Mar 2012 16:59:36
Original commit files touched by this commit  0.14.6_3
bf search for other commits by this committer
update math/R to 2.14.2, and adjust dependent ports
18 Jan 2012 23:04:08
Original commit files touched by this commit  0.14.6_2
bf search for other commits by this committer
update math/R to 2.14.1, and adjust dependent ports
27 Nov 2011 07:02:15
Original commit files touched by this commit  0.14.6_1
bf search for other commits by this committer
update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes
15 Nov 2011 20:09:02
Original commit files touched by this commit  0.14.6
tota search for other commits by this committer
- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
  to Mk/bsd.cran.mk

PR:             ports/162238
Submitted by:   tota (myself)
Approved by:    wen (maintainer of Mk/bsd.cran.mk and many related ports),
                David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
                  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
                Dan Rue <drue_AT_therub_DOT_org>
                  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:   yes
09 Nov 2011 06:41:15
Original commit files touched by this commit  0.14.6
wen search for other commits by this committer
- Update to 0.14.6
11 Oct 2011 14:19:46
Original commit files touched by this commit  0.14.4_1
bf search for other commits by this committer
update math/R to 2.13.2, and adjust dependent ports
23 Aug 2011 11:42:29
Original commit files touched by this commit  0.14.4
wen search for other commits by this committer
- Update to 0.14.4
28 Jul 2011 04:19:58
Original commit files touched by this commit  0.14.2_2
bf search for other commits by this committer
update R to 2.13.1 [1], and adjust dependent ports (this
includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)

PR:             158947 [1]
Submitted by:   wen ([1], independently)
07 May 2011 03:29:59
Original commit files touched by this commit  0.14.2_1
bf search for other commits by this committer
- update to 2.13.0
- switch to the bundled Rblas and Rlapack by default (this
  can be changed by setting BLAS and LAPACK) which favors
  correctness in some corner cases over a slight performance
  penalty; this will be revisited after the blas and lapack
  updates
- replace the STATIC_LIBR option with a LIBR option (on
  by default): if on, libR.a and libR.so are installed,
  and R is linked to libR.so. Otherwise, R is static, and
  no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
  device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
  PORTREVISION where necessary

PR:             153309 [1]
Approved by:    thierry (rkward*), wen (rpy*, R-cran-*)
30 Apr 2011 07:59:13
Original commit files touched by this commit  0.14.2
bf search for other commits by this committer
Use DISTVERSION for CRAN ports with hyphenated versions

Approved by:    wen
28 Feb 2011 16:03:13
Original commit files touched by this commit  0.14_2
bf search for other commits by this committer
- Update R to 2.12.2, a bugfix release
- Bump PORTREVISION of dependent ports,
  where necessary

Approved by:    makc, miwi (mentors, implicit)
29 Jan 2011 16:53:21
Original commit files touched by this commit  0.14_1
bf search for other commits by this committer
- Update R to 2.12.1
- Bump PORTREVISION of
  dependent ports

Approved by:    makc, miwi (mentors, implicit)
                pav (portmgr)
Feature safe:   yes
17 Jan 2011 07:57:07
Original commit files touched by this commit  0.14
wen search for other commits by this committer
R-cran-coda is a R module for output analysis and diagnostics for
Markov Chain Monte Carlo simulations.

WWW: http://cran.case.edu/web/packages/coda/index.html

Feature safe:   yes

Number of commits found: 29

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