R 2.14.1 math =12

A language for statistical computing and graphics
Maintained by: bf@FreeBSD.org
Port Added: 25 Jun 2004 16:17:20
Also Listed In: lang
License: not specified in port

From <http://cran.R-project.org/doc/FAQ/R-FAQ.html#What-is-R_003f>:

R is a system for statistical computation and graphics. It consists of
a language plus a run-time environment with graphics, a debugger,
access to certain system functions, and the ability to run programs
stored in script files.

The core of R is an interpreted computer language which allows branching
and looping as well as modular programming using functions.  Most of the
user-visible functions in R are written in R. It is possible for the user
to interface to procedures written in the C, C++, or FORTRAN languages
for efficiency. The R distribution contains functionality for a large
number of statistical procedures. Among these are: linear and generalized
linear models, nonlinear regression models, time series analysis, classical
parametric and nonparametric tests, clustering and smoothing. There is also
a large set of functions which provide a flexible graphical environment for
creating various kinds of data presentations. Additional modules ("add-on
packages") are available for a variety of specific purposes.

WWW: http://www.R-project.org/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

---

Slave ports

math/libR

math/libRmath

---

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: lang/gcc46, devel/binutils, x11/libX11, x11-toolkits/libXmu, x11-toolkits/libXt, lang/perl5.8, devel/pkg-config
Required To Run: lang/gcc46, x11/libX11, x11-toolkits/libXmu, x11-toolkits/libXt, devel/pkg-config, devel/gio-fam-backend, print/ghostscript9
Required Libraries: devel/icu, devel/pcre, graphics/jpeg, graphics/png, x11-toolkits/tk85, converters/libiconv, devel/gettext, devel/glib20, x11-toolkits/pango
There are no ports dependent upon this port

---

To install the port: cd /usr/ports/math/R/ && make install clean
To add the package: pkg_add -r R

---

Configuration Options

===> The following configuration options are available for R-2.14.1:
     ATLAS=off (default) "Use ATLAS instead of BLAS/LAPACK"
     ICU=on (default) "Use ICU for collation in multibyte locales"
     NLS=on (default) "Build with NLS support"
     PCRE_PORT=on (default) "Use PCRE port instead of bundled source"
     THREADS=on (default) "Build a multithreaded R"
     GHOSTSCRIPT=on (default) "Enable the [dev2]bitmap() graphics devices"
     JPEG=on (default) "Enable the jpeg() graphics device"
     LETTER_PAPER=off (default) "Use US Letter paper"
     LIBR=on (default) "Install libR and a dynamically-linked R"
     PANGOCAIRO=on (default) "Enable cairo and pango in graphics devices"
     PNG=on (default) "Enable the png() graphics device"
     TCLTK=on (default) "Use Tcl/Tk (for the tcltk package)"
     X11=on (default) "Enable the X11() graphics device"
     INFO_MANUALS=on (default) "Install GNU info manuals"
     PDF_MANUALS=off (default) "Install PDF manuals (requires TeX)"
===> Use 'make config' to modify these settings

---

Master Sites:

http://cran.r-project.org/src/base/R-2/

ftp://cran.r-project.org/pub/R/src/base/R-2/

http://cran.at.r-project.org/src/base/R-2/

http://cran.au.r-project.org/src/base/R-2/

http://cran.br.r-project.org/src/base/R-2/

http://cran.ch.r-project.org/src/base/R-2/

http://cran.es.r-project.org/src/base/R-2/

http://cran.dk.r-project.org/src/base/R-2/

http://cran.hu.r-project.org/src/base/R-2/

http://cran.uk.r-project.org/src/base/R-2/

http://cran.us.r-project.org/src/base/R-2/

http://cran.za.r-project.org/src/base/R-2/

ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/R-2/

http://lib.stat.cmu.edu/R/CRAN/src/base/R-2/

http://cran.stat.ucla.edu/src/base/R-2/

http://probability.ca/cran/src/base/R-2/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

update math/R to 2.14.1, and adjust dependent ports

remove a problematic mirror from MASTER_SITES

Feature safe:   yes

update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes

adjust linking and comments in dependent ports after the math/atlas update;
math/atlas-devel will be updated to use the same constructs at a later date

PR:             162706
Approved by:    miwi (portmgr)
Feature safe:   yes

update math/R to 2.13.2, and adjust dependent ports

- narrow the scope of BROKEN: the build problems were caused by
the update of devel/pcre to version 8.13
- use the bundled pcre by default

- Mark BROKEN: fails to package

Reported by:    pointyhat

fix WITH_DVI_MANUALS

Reported by:    Anton Shterenlikht, Benjamin Stier

update R to 2.13.1 [1], and adjust dependent ports (this
includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)

PR:             158947 [1]
Submitted by:   wen ([1], independently)

Mark as broken on sparc64: assertions fail.

- update ICU to 4.8
- chase library bump
- add an entry in UPDATING for instructions
- remove old conflict lines

Fix CONFIGURE_ARGS when using atlas

Reported by:    R. Hurling

- update to 2.13.0
- switch to the bundled Rblas and Rlapack by default (this
  can be changed by setting BLAS and LAPACK) which favors
  correctness in some corner cases over a slight performance
  penalty; this will be revisited after the blas and lapack
  updates
- replace the STATIC_LIBR option with a LIBR option (on
  by default): if on, libR.a and libR.so are installed,
  and R is linked to libR.so. Otherwise, R is static, and
  no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
  device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
  PORTREVISION where necessary

PR:             153309 [1]
Approved by:    thierry (rkward*), wen (rpy*, R-cran-*)

Clean up in preparation for update,
no functional change:
- indent more uniformly
- simplify slave port conditionals
- sort variables, pkg-plist

- Update R to 2.12.2, a bugfix release
- Bump PORTREVISION of dependent ports,
  where necessary

Approved by:    makc, miwi (mentors, implicit)

- Update R to 2.12.1
- Bump PORTREVISION of
  dependent ports

Approved by:    makc, miwi (mentors, implicit)
                pav (portmgr)
Feature safe:   yes

Chase devel/icu upgrade
Add an updating note

Update to 2.11.1

PR:             148264
Prodded by:     David Wolfskill <david@catwhisker.org>
Approved by:    makc (co-mentor)

Change my ports to use my FreeBSD.org email address.

Bounce PORTREVISION for gettext-related ports.  Have fun, ya'll.

- Fix on 6.X

Submitted by:   b. f. <bf1783@googlemail.com>

- Update to 2.11.0

PR:             ports/145993
Submitted by:   Wen Heping (myself)
Approved by:    maintainer

- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi

- update to jpeg-8

- Make math/libRmath to a slave port of math/R
- Add an option to build libR into a static, rather than a shared library
(requested by a few users)

PR:             143076
Submitted by:   Pedro F. Giffuni <giffunip@tutopia.com>
                "b. f." <bf1783@googlemail.com> (maintainer)
Approved by:    maintainer

- Update to 2.10.1

Submitted by:   "b. f." <bf1783@googlemail.com>
Thanks to:      wen@

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr

- Update to 2.9.2
- Fix build with custom PREFIX

PR:             based on 135927
Submitted by:   bf <bf1783@gmail.com> (maintainer)

- update to jpeg7
Tested by:      pav on pointyhat

- Update to 2.9.0

PR:             135251
Submitted by:   bf <bf2006a@yahoo.com> (maintainer)

- Update maintainer mail adresse

Submitted by:   "b. f." <bf1783@gmail.com> (maintainer via private mail)

Fix CONFIGURE_ENV after recent USE_FORTRAN changes.

PR:             130847
Submitted by:   bf2006a@yahoo.com (maintainer)

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

- Update to 2.8.1

PR:             ports/129863
Submitted by:   "Pedro F. Giffuni" <giffunip@tutopia.com>
Approved by:    bf <bf2006a@yahoo.com> (maintainer)

- Fix pkg-plist

PR:             ports/129063
Approved by:    maintainer timeout (2+ weeks)

- Fix distinfo

- Update to 2.8.0

PR:             ports/129063
Submitted by:   "Pedro F. Giffuni" <giffunip@tutopia.com>
Approved by:    Maintainer Timeout (2+ Weeks)

- pass maintainership to submitter

PR:             129025
Submitted by:   bf <bf2006a@yahoo.com>

- Update to 2.7.2
- Reset maintainership per request by maintainer

PR:             ports/128520
Submitted by:   Pedro F. Giffuni <giffunip at tutopia.com>
Approved by:    Eric van Gyzen <eric at vangyzen.net> (maintainer)

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk

- Update to 2.7.1

PR:             125245
Submitted by:   Pedro F. Giffuni <pfgshield-freebsd@yahoo.com>
Approved by:    maintainer timeout (over three weeks)

Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)

- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:    portmgr (xorg cleanup)

- Update to 2.6.1

PR:             ports/118358
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen <eric+fbports at vangyzen.net> (maintainer)

- Update to 2.6.0

PR:             ports/117142
Submitted by:   Vittorio De Martino <vdemart1@tin.it>
Approved by:    maintainer timeout (14 days)

Remove always-false/true conditions based on OSVERSION 500000

- Update to 2.5.1

PR:             ports/115826 (based on)
Submitted by:   vittorio de martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen <eric+fbports at vangyzen.net> (maintainer)

- Set --mandir and --infodir in CONFIGURE_ARGS if the configure script
  supports them.  This is determined by running ``configure --help'' in
  do-configure target and set the shell variable _LATE_CONFIGURE_ARGS
  which is then passed to CONFIGURE_ARGS.
- Remove --mandir and --infodir in ports' Makefile where applicable
  Few ports use REINPLACE_CMD to achieve the same effect, remove them too.
- Correct some manual pages location from PREFIX/man to MANPREFIX/man
- Define INFO_PATH where necessary
- Document that .info files are installed in a subdirectory relative to
  PREFIX/INFO_PATH and slightly change add-plist-info to use INFO_PATH and
  subdirectory detection.

PR:             ports/111470
Approved by:    portmgr
Discussed with: stas (Mk/*), gerald (info related stuffs)
Tested by:      pointyhat exp run

Now we use USE_FORTRAN=yes to use FORTRAN compiler.

Approved by:    maintainer

- Fix build on 5.x.  configure script changed the env that specifies
  the makeinfo command.

Reported by:   pointyhat via pav
Approved by:   maintainer (implicit)

- Update to 2.5.0

PR:             ports/112713 (based on)
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen (maintainer)

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

A workaround to prevent hangs up during the build with
ATLAS. AFAIK, this happens only for i386.

Approved by:    maintainer

- Update to 2.4.1

PR:             ports/107638 (based on)
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    maintainer timeout (18 days)

Fix library dependencies.

Submitted by:   rafan
Approved by:    portmgr(kris) implicitly

Migrate to gfortran42.

Approved by:    portmgr(kris)

- Update to 2.4.0

PR:             ports/104261
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen <eric+fbports at vangyzen.net> (maintainer)

- Update to 2.3.1

PR:             ports/102432
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen <eric+fbports at vangyzen.net> (maintainer)

- s,INSTALLS_SHLIB,USE_LDCONFIG,g
- these include irc/ japanese/ java/ lang/ mail/ math/ maintained by ports@

PR:             ports/101916
Submitted by:   Gea-Suan Lin <gslin_AT_gslin dot org>

- Does not compile on FreeBSD 4.X

Reported by:    krismail

- Update to 2.3.0

PR:             ports/96493
Submitted by:   Eric van Gyzen <eric+fbports@vangyzen.net> (maintainer)

Fix pkg-plist when some WITHOUT_* are defined

PR:             ports/94399
Submitted by:   Rong-En Fan <rafan@infor.org>
Approved by:    Eric van Gyzen <eric+fbports@vangyzen.net> (maintainer)

- Update to 2.2.1
- Use DOCSDIR

PR:             91564
Submitted by:   Eric van Gyzen <eric+fbports@vangyzen.net> (maintainer)

- Update to 2.2.0

PR:             ports/87276
Submitted by:   maintainer

- Fix dependency on makeinfo

Submitted by:   Roman Neuhauser <neuhauser@sigpipe.cz>

- Always use external gettext
- Bring in fresh makeinfo so HTML manual can be build [1]

Reported by:    krismail [1]

- Update to 82883

PR:             ports/82883
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu> (maintainer)

Update to 2.1.0

PR:             ports/82174
Submitted by:   maintainer

Update to 2.0.1

PR:             ports/73975
Submitted by:   maintainer

- Update to 2.0.0

PR:             ports/72544
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu> (maintainer)

- Update to 1.9.1

PR:             ports/68295
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu> (maintainer)

15 vulnerabilities affecting 34 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities