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Port details
py-fastcluster Python functions for hierarchical clustering
1.1.21 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: johannes@perceivon.net search for ports maintained by this maintainer
Port Added: 18 Dec 2013 11:12:51
Also Listed In: python
License: BSD2CLAUSE
Fastcluster provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.

Part of this module is intended to replace the functions
    linkage, single, complete, average, weighted, centroid, median, ward
in the module scipy.cluster.hierarchy with the same functionality but much
faster algorithms. Moreover, the function 'linkage_vector' provides
memory-efficient clustering for vector data.

The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/Numpy. The core implementation of this
library is in C++ for efficiency.

WWW: http://danifold.net/fastcluster.html
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-fastcluster/ && make install clean
To add the package: pkg install py27-fastcluster

PKGNAME: py27-fastcluster

ONLY_FOR_ARCHS: nil

NOT_FOR_ARCHS: nil

distinfo:

TIMESTAMP = 1481609357
SHA256 (fastcluster-1.1.21.tar.gz) = c0f7c234a93d5414e9b1300b17ec5c82bd9a9e4c210fc5d9bc3e2bc82fced989
SIZE (fastcluster-1.1.21.tar.gz) = 162920


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. numeric.py : math/py-numpy
  2. py27-setuptools27>0 : devel/py-setuptools27
  3. python2.7 : lang/python27
Runtime dependencies:
  1. numeric.py : math/py-numpy
  2. py27-scipy>0 : science/py-scipy
  3. py27-setuptools27>0 : devel/py-setuptools27
  4. python2.7 : lang/python27
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
python

Master Sites:
  1. https://files.pythonhosted.org/packages/source/f/fastcluster/
  2. https://pypi.python.org/packages/source/f/fastcluster/

Number of commits found: 10

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
01 Feb 2017 11:31:45
Original commit files touched by this commit  1.1.21
Revision:433001
amdmi3 search for other commits by this committer
- Update to 1.1.21
- Allow concurrent installs (fix docdir)

PR:		212213
Submitted by:	xmj@FreeBSD.org
Approved by:	maintainer timeout (johannes@perceivon.net, 6 weeks)
23 Jun 2016 09:48:53
Original commit files touched by this commit  1.1.20
Revision:417356
tz search for other commits by this committer
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner
requested.

This only affects "Created by" lines with one exception: devel/uclcmd. There the
maintainer is changed. This was overlooked in r416918.

Approved by: junovitch (mentor)
15 Jun 2016 09:04:29
Original commit files touched by this commit  1.1.20
Revision:416918
tz search for other commits by this committer
Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net

PR:           210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by:  pi (mentor)
25 May 2016 16:54:31
Original commit files touched by this commit  1.1.20
Revision:415848
pi search for other commits by this committer
Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org

PR:		209746
Submitted by:	xmj
24 May 2016 00:50:47
Original commit files touched by this commit  1.1.20
Revision:415751
amdmi3 search for other commits by this committer
- Update to 1.1.20

PR:		209623
Submitted by:	xmj (maintainer)
01 Apr 2016 14:16:20
Original commit files touched by this commit  1.1.13_2
Revision:412348
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
21 Oct 2014 16:54:55
Original commit files touched by this commit  1.1.13_2
Revision:371328
mva search for other commits by this committer
- Convert ports of math/ to new USES=python

Approved by:	portmgr (implicit)
10 Sep 2014 20:50:37
Original commit files touched by this commit  1.1.13_2
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
10 Mar 2014 20:55:22
Original commit files touched by this commit  1.1.13_1
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
18 Dec 2013 11:12:40
Original commit files touched by this commit  1.1.13
Revision:336815
wg search for other commits by this committer
math/py-fastcluster: Python functions for hierarchical clustering

Fastcluster provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.

Part of this module is intended to replace the functions
    linkage, single, complete, average, weighted, centroid, median, ward
in the module scipy.cluster.hierarchy with the same functionality but much
faster algorithms. Moreover, the function 'linkage_vector' provides
memory-efficient clustering for vector data.

The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/Numpy. The core implementation of this
library is in C++ for efficiency.

WWW: http://danifold.net/fastcluster.html

PR:		ports/184931
Submitted by:	Johannes Jost Meixner <xmj chaot.net>

Number of commits found: 10

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