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Port details
R-cran-som Self-Organizing Map
0.3.5_9 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: tota@FreeBSD.org search for ports maintained by this maintainer
Port Added: 19 Apr 2012 12:44:23
License: GPLv3
Self-Organizing Map (with application in gene clustering)

WWW:	http://cran.r-project.org/web/packages/som/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. R : math/R
Runtime dependencies:
  1. R : math/R
There are no ports dependent upon this port

To install the port: cd /usr/ports/science/R-cran-som/ && make install clean
To add the package: pkg install science/R-cran-som


Configuration Options
     No options to configure

USES:
cran:auto-plist

Master Sites:
  1. http://cran.cnr.berkeley.edu/src/contrib/
  2. http://cran.cnr.berkeley.edu/src/contrib/Archive/som/
  3. http://cran.md.tsukuba.ac.jp/src/contrib/
  4. http://cran.md.tsukuba.ac.jp/src/contrib/Archive/som/
  5. http://cran.ms.unimelb.edu.au/src/contrib/
  6. http://cran.ms.unimelb.edu.au/src/contrib/Archive/som/
  7. http://cran.rakanu.com/src/contrib/
  8. http://cran.rakanu.com/src/contrib/Archive/som/
  9. http://cran.stat.unipd.it/src/contrib/
  10. http://cran.stat.unipd.it/src/contrib/Archive/som/
  11. http://cran.univ-lyon1.fr/src/contrib/
  12. http://cran.univ-lyon1.fr/src/contrib/Archive/som/
  13. http://distcache.FreeBSD.org/ports-distfiles/
  14. http://ftp.ctex.org/mirrors/CRAN/src/contrib/
  15. http://ftp.ctex.org/mirrors/CRAN/src/contrib/Archive/som/
  16. http://ftp5.gwdg.de/pub/misc/cran/src/contrib/
  17. http://ftp5.gwdg.de/pub/misc/cran/src/contrib/Archive/som/
  18. http://mirror.its.dal.ca/cran/src/contrib/
  19. http://mirror.its.dal.ca/cran/src/contrib/Archive/som/
  20. http://mirrors.dotsrc.org/cran/src/contrib/
  21. http://mirrors.dotsrc.org/cran/src/contrib/Archive/som/
  22. http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/
  23. http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/Archive/som/

Number of commits found: 13

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
10 Sep 2014 20:50:37
Original commit files touched by this commit  0.3.5_9
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
10 Mar 2014 20:55:22
Original commit files touched by this commit  0.3.5_8
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
28 Dec 2013 10:28:41
Original commit files touched by this commit  0.3.5_7
Revision:337846
dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
27 Nov 2013 18:56:44
Original commit files touched by this commit  0.3.5_7
Revision:335044
dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
13 Nov 2013 08:19:35
Original commit files touched by this commit  0.3.5_7
Revision:333659
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
26 Oct 2013 00:52:36
Original commit files touched by this commit  0.3.5_6
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 22:48:31
Original commit files touched by this commit  0.3.5_5
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
28 May 2013 15:15:06
Original commit files touched by this commit  0.3.5_5
Revision:319316
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
07 Mar 2013 04:21:35
Original commit files touched by this commit  0.3.5_4
Revision:313562
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
04 Jan 2013 17:51:39
Original commit files touched by this commit  0.3.5_3
Revision:309935
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
26 Jun 2012 23:57:00
Original commit files touched by this commit  0.3.5_2
bf search for other commits by this committer
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
04 May 2012 20:56:15
Original commit files touched by this commit  0.3.5_1
bf search for other commits by this committer
- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]
19 Apr 2012 12:43:14
Original commit files touched by this commit  0.3.5
tota search for other commits by this committer
- Add a new port: science/R-cran-som

  Self-Organizing Map (with application in gene clustering)

  WWW:  http://cran.r-project.org/web/packages/som/

Number of commits found: 13

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