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Port details
hdf5-18 Hierarchical Data Format library (from NCSA) 1.8
1.8.18_1 science on this many watch lists=4 search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port
Maintainer: thierry@FreeBSD.org search for ports maintained by this maintainer
Port Added: 24 Nov 2008 05:26:03
Also Listed In: archivers graphics
License: BSD4CLAUSE
HDF5 is a completely new Hierarchical Data Format product consisting of a data
format specification and a supporting library implementation. HDF5 is designed
to address some of the limitations of the older HDF product and to address
current and anticipated requirements of modern systems and applications.

HDF5 includes the following improvements:
- A new file format designed to address some of the deficiencies of HDF4.x,
  particularly the need to store larger files and more objects per file.
- A simpler, more comprehensive data model that includes only two basic
  structures: a multidimensional array of record structures, and a grouping
  structure.
- A simpler, better-engineered library and API, with improved support for
  parallel I/O, threads, and other requirements imposed by modern systems
  and applications.

Note: two releases of HDF5 are available. HDF5-1.10 can read files created with
earlier releases, but earlier releases such as HDF5-1.8 may not be able to read
HDF5-1.10 files. If you need the latest, please see the port science/hdf5.

WWW: http://www.hdfgroup.org/HDF5/
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/hdf5-18/ && make install clean
To add the package: pkg install hdf5-18

PKGNAME: hdf5-18

ONLY_FOR_ARCHS: nil

NOT_FOR_ARCHS: nil

distinfo:

TIMESTAMP = 1480530931
SHA256 (hdf5-1.8.18.tar.bz2) = 01c6deadf4211f86922400da82c7a8b5b50dc8fc1ce0b5912de3066af316a48c
SIZE (hdf5-1.8.18.tar.bz2) = 10081294

This port is required by:

for Libraries * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options
===> The following configuration options are available for hdf5-18-1.8.18_1:
     DEBUG=off: Build with debugging support
     EXAMPLES=on: Build and/or install examples
     FORTRAN=off: Fortran language support
     SZIP=off: Szip compression support
===> Use 'make config' to modify these settings

USES:
libtool:keepla tar:bzip2

Master Sites:
  1. ftp://ftp.hdfgroup.org/HDF5/current18/src/
  2. http://support.hdfgroup.org/ftp/HDF5/current18/src/
  3. https://support.hdfgroup.org/ftp/HDF5/current18/src/

Number of commits found: 31

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Dec 2016 13:24:57
Original commit files touched by this commit  1.8.18_1
Revision:428057
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
30 Nov 2016 22:02:02
Original commit files touched by this commit  1.8.18
Revision:427463
thierry search for other commits by this committer
Upgrade to 1.8.18.

Changelog at https://support.hdfgroup.org/HDF5/doc1.8/ADGuide/Changes.html#1818
13 Nov 2016 12:32:46
Original commit files touched by this commit  1.8.17
Revision:426038 This port version is marked as vulnerable.
thierry search for other commits by this committer
Resurrect hdf5-18, because it is required by french/med and french/aster.

Two releases of HDF5 are available for download. HDF5-1.10 should read files
created with earlier releases, but problem arise with MED and this version.
03 May 2014 03:25:44
Original commit files touched by this commit  1.8.10_2
Revision:352858 This port version is marked as vulnerable.
sunpoet search for other commits by this committer
- Remove science/hdf5-18
23 Apr 2014 13:25:17
Original commit files touched by this commit  1.8.10_2
Revision:351936 This port version is marked as vulnerable.
tijl search for other commits by this committer
When linking a library libA with a library libB using libtool, if libB.la
exists, libtool will add all libraries libB.la refers to (dependency_libs
field) to the linker command line and store them in the dependency_libs
field of libA.la.  So everything that subsequently links with libA will also
link to these extra libraries.  This causes too much overlinking.

This commit modifies Mk/Uses/libtool.mk so it empties the dependency_libs
field in .la libraries during staging.  However, because .la libraries have
very limited use when dependency_libs is empty it makes sense to completely
remove them during staging.

So with this commit USES=libtool is modified to remove .la libraries and a
new form (USES=libtool:keepla) is introduced in case they need to be kept
(dependency_libs is still emptied).
(Only the first 15 lines of the commit message are shown above View all of this commit message)
28 Mar 2014 12:52:00
Original commit files touched by this commit  1.8.10_1
Revision:349414 This port version is marked as vulnerable.
amdmi3 search for other commits by this committer
- USE_BZIP2 -> USES=tar:bzip2
- Use new LIB_DEPENDS syntax

Approved by:	portmgr (blanket)
07 Mar 2014 17:36:05
Original commit files touched by this commit  1.8.10_1
Revision:347410 This port version is marked as vulnerable.
tijl search for other commits by this committer
Add USES=libtool to fix a linker problem when the FORTRAN option is enabled
on versions of FreeBSD where the base system binutils is too old to link
object files generated by lang/gcc (gfortran).

PR:		ports/187252
16 Feb 2014 17:15:32
Original commit files touched by this commit  1.8.10
Revision:344614 This port version is marked as vulnerable.
tijl search for other commits by this committer
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
11 Dec 2013 18:38:54
Original commit files touched by this commit  1.8.10
Revision:336191 This port version is marked as vulnerable.
sunpoet search for other commits by this committer
- Fix PKGNAME collision
10 Dec 2013 19:26:47
Original commit files touched by this commit  1.8.10
Revision:336089 This port version is marked as vulnerable.
sunpoet search for other commits by this committer
- Use CONFLICTS_INSTALL instead of CONFLICTS
- Remove NO_LATEST_LINK
25 Sep 2013 00:54:09
Original commit files touched by this commit  1.8.10
Revision:328226 This port version is marked as vulnerable.
bdrewery search for other commits by this committer
- Remove NO_STAGE as these have been tested to be safe

With hat:	portmgr
20 Sep 2013 22:48:31
Original commit files touched by this commit  1.8.10
Revision:327767 This port version is marked as vulnerable.
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
31 Aug 2013 08:01:25
Original commit files touched by this commit  1.8.10
Revision:325778 This port version is marked as vulnerable.
sunpoet search for other commits by this committer
- Update to 1.8.10 patch 1
- Update MASTER_SITES
- Cosmetic change
- Take maintainership
- Reformat pkg-descr

Changes:	http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.10-patch1/src/hdf5-1.8.10-patch1-RELEASE.txt
PR:		ports/176809
Submitted by:	sunpoet (myself)
Approved by:	maintainer (timeout, 24 weeks)
28 Apr 2013 22:08:22
Original commit files touched by this commit  1.8.9
Revision:316757 This port version is marked as vulnerable.
bapt search for other commits by this committer
Convert science to new options framework
06 Jun 2012 16:45:22
Original commit files touched by this commit  1.8.9
 This port version is marked as vulnerable.
sunpoet search for other commits by this committer
- Update to 1.8.9
- Update MASTER_SITES
- Pet portlint: remove ABI version number from LIB_DEPENDS
- Restore missing newline at the end of patch file

Changes:       
http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.9-RELEASE.txt
                http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:             ports/168142
Submitted by:   sunpoet (myself)
Approved by:    maintainer (timeout, 18 days)
13 Feb 2012 03:31:53
Original commit files touched by this commit  1.8.8
 This port version is marked as vulnerable.
eadler search for other commits by this committer
Update to 1.8.8

Changes:

Fix bad shell scripts; all regression tests pass now

PR:             ports/163595
Submitted by:   Rob Farmer <rfarmer@predatorlabs.net>
Approved by:    maintainer timeout (49 days)
09 Nov 2011 15:26:04
Original commit files touched by this commit  1.8.7
 This port version is marked as vulnerable.
miwi search for other commits by this committer
- Remove WITH_FBSD10_FIX, is no longer needed
29 Oct 2011 07:40:51
Original commit files touched by this commit  1.8.7
 This port version is marked as vulnerable.
miwi search for other commits by this committer
- Fix build with FreeBSD 10
15 Jul 2011 06:58:28
Original commit files touched by this commit  1.8.7
 This port version is marked as vulnerable.
sunpoet search for other commits by this committer
- Update to 1.8.7

Changes:        http://hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:             ports/158394
Submitted by:   sunpoet (myself)
Approved by:    maintainer (timeout, 16 days)
12 Mar 2011 10:07:53
Original commit files touched by this commit  1.8.6
 This port version is marked as vulnerable.
culot search for other commits by this committer
- Update to 1.8.6

Changes:        http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:             ports/155458
Submitted by:   Rob Farmer <rfarmer AT predatorlabs.net>
Approved by:    Quincey Koziol <koziol AT hdfgroup.org> (maintainer)
09 Jan 2011 11:00:35
Original commit files touched by this commit  1.8.5
 This port version is marked as vulnerable.
sunpoet search for other commits by this committer
- Update to 1.8.5 patch 1
- Add option: DEBUG

Changes:        http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:             ports/153400 (based on)
Submitted by:   Rob Farmer <rfarmer@predatorlabs.net>
Approved by:    maintainer (timeout, 17 days)
05 May 2010 14:53:19
Original commit files touched by this commit  1.8.4
 This port version is marked as vulnerable.
glarkin search for other commits by this committer
- Fixed WWW: link

Submitted by:   sunpoet@sunpoet.net (via email)
04 May 2010 18:19:52
Original commit files touched by this commit  1.8.4
 This port version is marked as vulnerable.
glarkin search for other commits by this committer
- Added missing pkg-plist entry

Reported by:    QAT
04 May 2010 17:50:42
Original commit files touched by this commit  1.8.4
 This port version is marked as vulnerable.
glarkin search for other commits by this committer
- Update to 1.8.4

PR:             ports/144782
Submitted by:   Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Approved by:    koziol@hdfgroup.org (maintainer, implicit, timeout - 49 days)
13 Sep 2009 00:08:01
Original commit files touched by this commit  1.8.3_1
 This port version is marked as vulnerable.
gerald search for other commits by this committer
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
03 Sep 2009 23:47:20
Original commit files touched by this commit  1.8.3
 This port version is marked as vulnerable.
araujo search for other commits by this committer
- Update to 1.8.3.

PR:             ports/138052
Submitted by:   Sylvio Cesar <scjamorim@bsd.com.br>
Approved by:    Quincey Koziol <koziol@hdfgroup.org> (maintainer)
19 Aug 2009 09:24:54
Original commit files touched by this commit  1.8.2_1
 This port version is marked as vulnerable.
miwi search for other commits by this committer
- Fix fetch
31 May 2009 20:31:08
Original commit files touched by this commit  1.8.2_1
 This port version is marked as vulnerable.
pav search for other commits by this committer
- Resolve LATEST_LINK conflict
07 Jan 2009 16:34:27
Original commit files touched by this commit  1.8.2_1
 This port version is marked as vulnerable.
gerald search for other commits by this committer
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
24 Nov 2008 05:29:55
Original commit files touched by this commit  1.8.2
 This port version is marked as vulnerable.
miwi search for other commits by this committer
- Update to 1.8.2

PR:             128988
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
24 Nov 2008 05:25:44
Original commit files touched by this commit  1.6.8
 This port version is marked as vulnerable.
miwi search for other commits by this committer
- Force commit
        repocopy from science/hdf5 to science/hdf5-18

Number of commits found: 31

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