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Port details
libghemical Support libraries of science/ghemical port
3.0.0_6 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 03 Jul 2006 08:09:17
License: not specified in port
libghemical is a support library packages for biology/ghemical

WWW: http://www.uku.fi/~thassine/projects/ghemical/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. obabel : science/openbabel
  2. intltool-update : textproc/intltool
  3. ld : devel/binutils
  4. gfortran48 : lang/gcc
  5. msgfmt : devel/gettext-tools
  6. gmake : devel/gmake
  7. pkgconf : devel/pkgconf
  8. as : devel/binutils
  9. glproto.pc : x11/glproto
  10. dri2proto.pc : x11/dri2proto
Runtime dependencies:
  1. gfortran48 : lang/gcc
Library dependencies:
  1. libmpqc.so : science/mpqc
  2. libf2c.so : lang/f2c
  3. libintl.so : devel/gettext-runtime
  4. libGL.so : graphics/libGL

This port is required by:

for Libraries * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

To install the port: cd /usr/ports/science/libghemical/ && make install clean
To add the package: pkg install science/libghemical


Configuration Options
     No options to configure

USES:
fortran gettext gmake pathfix pkgconfig libtool

Master Sites:
  1. http://bioinformatics.org/ghemical/download/current/
  2. http://bioinformatics.org/ghemical/download/release20111012/
  3. http://distcache.FreeBSD.org/ports-distfiles/

Number of commits found: 43

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
16 Dec 2014 22:10:24
Original commit files touched by this commit  3.0.0_6
Revision:374828
pawel search for other commits by this committer
- Upadate biology/mopac to version 1.15
- Bump affected ports
- Switch ports to new mastersite, add LICENSE
- Reformat ports pkg descriptions

PR:		194493
Submitted by:	tkato432@yahoo.com
25 Sep 2014 13:56:06
Original commit files touched by this commit  3.0.0_6
Revision:369254
marino search for other commits by this committer
science/mpqc: Don't override libtool -version-info, bump dependent ports

We accept SHLIB version changes when moving to USE=libtool, so stop
overriding it with the intent of prevent library version changes, which
is considered the better approach over the long term. Two ports are
dependent on mpqc, so bump them for the second time today.

requested by:	tijl@
25 Sep 2014 11:04:03
Original commit files touched by this commit  3.0.0_5
Revision:369236
marino search for other commits by this committer
science: Fix mpqc, libint and unbreak ghemical, and libghemical atomically

science/ghemical would not link because libghemical.so (from science/
libghemical port) had never been properly linked.  Links to all mpqc "SC"
libraries were added to LDFLAGS to rectify this.  The configure breakage
and solution is described below.

After the version of lang/gcc was bumped from 4.7 to 4.8,
science/libghemical ceased to configure and it was marked broken.  After
recreating the conftest, it was discovered that two versions incompatible
versions of libgcc_s.so were getting pulled in by the realtime linker:
the base version and the gcc48 ports version.

The base version was getting pulled in by science/libint.  To unbreak
libghemical, libint is now built with lang/gcc.  It was necessary to
(Only the first 15 lines of the commit message are shown above View all of this commit message)
13 Sep 2014 21:20:16
Original commit files touched by this commit  3.0.0_4
Revision:368144
antoine search for other commits by this committer
Mark BROKEN: Fails to configure

checking for main in -llapack... yes
checking for sc-config... /usr/local/bin/sc-config
checking SC - version... no
*** Could not run SC test program, checking why...
*** The test program compiled, but did not run. This usually means
*** that the run-time linker is not finding SC or finding the wrong
*** version of SC.

Reported by:	pkg-fallout
10 Sep 2014 20:50:37
Original commit files touched by this commit  3.0.0_4
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
06 Aug 2014 16:06:23
Original commit files touched by this commit  3.0.0_3
Revision:364199
amdmi3 search for other commits by this committer
- Switch to USES=libtool, drop .la files
- Stagify
- Strip libraries
24 Jul 2014 16:33:10
Original commit files touched by this commit  3.0.0_2
Revision:362828
bapt search for other commits by this committer
Reset maintainership for ports not staged with no pending PR

With hat:	portmgr
14 Jul 2014 18:42:04
Original commit files touched by this commit  3.0.0_2
Revision:361812
bapt search for other commits by this committer
Modernize LIB_DEPENDS

With hat:	portmgr
10 Mar 2014 20:55:22
Original commit files touched by this commit  3.0.0_2
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
16 Feb 2014 17:15:32
Original commit files touched by this commit  3.0.0_1
Revision:344614
tijl search for other commits by this committer
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
26 Oct 2013 00:52:36
Original commit files touched by this commit  3.0.0_1
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 22:48:31
Original commit files touched by this commit  3.0.0
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
24 Apr 2013 07:35:41
Original commit files touched by this commit  3.0.0
Revision:316407
ak search for other commits by this committer
- Convert USE_GETTEXT to USES (part 1)

Approved by:	portmgr (bapt)
23 Apr 2013 14:20:28
Original commit files touched by this commit  3.0.0
Revision:316355
bapt search for other commits by this committer
Finish converting the whole ports tree to USES=pkgconfig
19 Mar 2013 13:04:31
Original commit files touched by this commit  3.0.0
Revision:314640
eadler search for other commits by this committer
This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.

If a port used other USE_GNOME items it was untouched.
The ports that used other USES were fixed by hand.

PR:		ports/177081
Reviewed by:	bapt
Approved by:	portmgr (miwi)
08 Jan 2013 06:53:52
Original commit files touched by this commit  3.0.0
Revision:310071
maho search for other commits by this committer
* Update to 3.0.0.
* Some build cleanups. [1]

Submitted by:	bapt@ [1]
07 Jan 2013 06:42:08
Original commit files touched by this commit  2.99.1_3
Revision:310024
bapt search for other commits by this committer
- Add an explicit dependency on gettext to fix build on system where everything
  is built without NLS
While here:
- Trim headers
- Convert USE_GNOME=pkgconfig -> USE_PKGCONFIG= build

Approved by:	maho (maintainer)
11 Dec 2012 14:19:54
Original commit files touched by this commit  2.99.1_3
Revision:308694
makc search for other commits by this committer
science/openbabel:
- Update openbabel to 2.3.2
- Switch to CMake build system
- Add PYTHON and CAIRO options
- Don't rename babel binary, mark conflict with ancient biology/babel

science/py-openbabel:
- Merge py-openbabel to openbabel

other:
- chase openbabel update
25 Aug 2011 02:01:42
Original commit files touched by this commit  2.99.1_2
maho search for other commits by this committer
Use libdata/pkgconfig instead of lib/pkgconfig,
and bump portrevision.

PR:             naddy
03 Jul 2011 13:22:25
Original commit files touched by this commit  2.99.1_1
ohauer search for other commits by this committer
 - remove MD5
23 Jun 2011 03:03:23
Original commit files touched by this commit  2.99.1_1
danfe search for other commits by this committer
Kill EOL whitespace.
29 Dec 2010 20:04:42
Original commit files touched by this commit  2.99.1_1
pgollucci search for other commits by this committer
- DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.

PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)
19 Sep 2010 05:53:44
Original commit files touched by this commit  2.99.1_1
maho search for other commits by this committer
Fix build.
15 Sep 2010 18:35:24
Original commit files touched by this commit  2.99.1_1
ade search for other commits by this committer
Autotools update.   Read ports/UPDATING 20100915 for details.

Approved by:    portmgr (for Mk/bsd.port.mk part)
Tested by:      Multiple -exp runs
02 Mar 2010 23:08:23
Original commit files touched by this commit  2.99.1
pav search for other commits by this committer
- Mark BROKEN: does not compile

Reported by:    pointyhat
Feature safe:   yes
06 Nov 2009 02:04:53
Original commit files touched by this commit  2.99.1
maho search for other commits by this committer
remove unnecessary file.

Spotted by: QAT
05 Nov 2009 09:16:08
Original commit files touched by this commit  2.99.1
maho search for other commits by this committer
Update to 2.99.1 and unbreak.

Feature safe:   yes
23 Sep 2009 18:38:47
Original commit files touched by this commit  2.98_3
pav search for other commits by this committer
- Mark BROKEN on 7.X and 8.X

Reported by:    pointyhat
Feature safe:   yes
13 Sep 2009 00:08:01
Original commit files touched by this commit  2.98_3
gerald search for other commits by this committer
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
14 Feb 2009 08:07:13
Original commit files touched by this commit  2.98_2
maho search for other commits by this committer
Fix build with gcc43.

Fix obtained from
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-August/000752.html
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-July/000742.html
.

Spotted by:     pav
11 Jan 2009 23:16:12
Original commit files touched by this commit  2.98_2
maho search for other commits by this committer
Remove CONFIGURE_ENV

Submitted by:   gerald@
07 Jan 2009 16:34:27
Original commit files touched by this commit  2.98_2
gerald search for other commits by this committer
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
28 Aug 2008 19:25:32
Original commit files touched by this commit  2.98_1
gahr search for other commits by this committer
- Fix build

Reported by:    QA Tindie
22 Aug 2008 22:23:17
Original commit files touched by this commit  2.98
maho search for other commits by this committer
Update to 2.98.
20 Aug 2008 00:57:32
Original commit files touched by this commit  2.10_4
ade search for other commits by this committer
Conversion from (now defunct) autoconf-2.61 to autoconf-2.62

Tested by:      exp build run (erwin)
07 Jul 2008 00:08:33
Original commit files touched by this commit  2.10_4
beech search for other commits by this committer
Bump portrevision after openbabel update.
30 Sep 2007 04:47:37
Original commit files touched by this commit  2.10_3
linimon search for other commits by this committer
Switch autoconf dependencies from 2.53 or 2.59 to 2.61.

PR:             ports/116639
Submitted by:   aDe
14 Jul 2007 09:51:49
Original commit files touched by this commit  2.10_2
maho search for other commits by this committer
Now we use USE_FORTRAN=yes to use FORTRAN compiler.
17 Jan 2007 04:42:03
Original commit files touched by this commit  2.10_2
maho search for other commits by this committer
* Some fixes.
* Mopac depends on f2c, added -lf2c (dirty workaround), fixes libghemical.pc.
* Bump portrevision.
13 Jan 2007 01:31:41
Original commit files touched by this commit  2.10_1
maho search for other commits by this committer
* Migrate to gfortran.
* Bump port revision.
30 Nov 2006 04:44:32
Original commit files touched by this commit  2.10
maho search for other commits by this committer
Fix pkg-plist

Submitted by:   kris
30 Nov 2006 01:12:11
Original commit files touched by this commit  2.10
maho search for other commits by this committer
Update to 2.1.0
* dependency to ATLAS is now conditional.
03 Jul 2006 07:30:45
Original commit files touched by this commit  2.00
maho search for other commits by this committer
Libghemical port. This port installs support libraries of
science/ghemical port. From version 2.0, science/ghemical becomes
large, splitted into two parts. Update of ghemical port will
follow soon.

Number of commits found: 43

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