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Port details
libghemical Support libraries of science/ghemical port
3.0.0_20 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.0.0_19Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-07-03 08:09:17
Last Update: 2024-01-01 11:49:51
Commit Hash: f2489ab
License: GPLv2
WWW:
https://www.bioinformatics.org/ghemical/ghemical/index.html
Description:
libghemical is a support library packages for biology/ghemical
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (82 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/libghemical-3.0.0_20/catalog.mk
  3. /usr/local/share/licenses/libghemical-3.0.0_20/LICENSE
  4. /usr/local/share/licenses/libghemical-3.0.0_20/GPLv2
  5. include/ghemical/atom.h
  6. include/ghemical/bond.h
  7. include/ghemical/chn_info.h
  8. include/ghemical/conjgrad.h
  9. include/ghemical/constraint.h
  10. include/ghemical/eng1_mm.h
  11. include/ghemical/eng1_mm_default.h
  12. include/ghemical/eng1_mm_prmfit.h
  13. include/ghemical/eng1_mm_tripos52.h
  14. include/ghemical/eng1_qm.h
  15. include/ghemical/eng1_qm_mopac.h
  16. include/ghemical/eng1_qm_mpqc.h
  17. include/ghemical/eng1_sf.h
  18. include/ghemical/eng1_sf_cg.h
  19. include/ghemical/eng1_sf_ua.h
  20. include/ghemical/eng2_qm_mm.h
  21. include/ghemical/engine.h
  22. include/ghemical/geomopt.h
  23. include/ghemical/intcrd.h
  24. include/ghemical/libghemicaldefine.h
  25. include/ghemical/libghemical-features.h
  26. include/ghemical/local_i18n.h
  27. include/ghemical/mfinder.h
  28. include/ghemical/model.h
  29. include/ghemical/moldyn.h
  30. include/ghemical/notice.h
  31. include/ghemical/pop_ana.h
  32. include/ghemical/resonance.h
  33. include/ghemical/sasaeval.h
  34. include/ghemical/search.h
  35. include/ghemical/seqbuild.h
  36. include/ghemical/tab_mm_default.h
  37. include/ghemical/tab_mm_prmfit.h
  38. include/ghemical/tab_mm_tripos52.h
  39. include/ghemical/typedef.h
  40. include/ghemical/typerule.h
  41. include/ghemical/utility.h
  42. include/ghemical/v3d.h
  43. lib/libghemical.so.5.0.1
  44. lib/libghemical.so.5
  45. lib/libghemical.so
  46. lib/libghemical.a
  47. libdata/pkgconfig/libghemical.pc
  48. share/libghemical/3.0.0/amber/all_amino94_MOD.in
  49. share/libghemical/3.0.0/amber/all_aminoct94.in
  50. share/libghemical/3.0.0/amber/all_aminont94.in
  51. share/libghemical/3.0.0/amber/all_nuc94_MOD.in
  52. share/libghemical/3.0.0/amber/parm99_frcmod_ff99SB.dat
  53. share/libghemical/3.0.0/builder/amino.txt
  54. share/libghemical/3.0.0/builder/nucleic.txt
  55. share/libghemical/3.0.0/param_mm/default/atomtypes.txt
  56. share/libghemical/3.0.0/param_mm/default/parameters1.txt
  57. share/libghemical/3.0.0/param_mm/default/parameters2.txt
  58. share/libghemical/3.0.0/param_mm/default/parameters3.txt
  59. share/libghemical/3.0.0/param_mm/default/parameters4.txt
  60. share/libghemical/3.0.0/param_mm/prmfit/atomtypes.txt
  61. share/libghemical/3.0.0/param_mm/prmfit/parameters1.txt
  62. share/libghemical/3.0.0/param_mm/prmfit/parameters2.txt
  63. share/libghemical/3.0.0/param_mm/prmfit/parameters3.txt
  64. share/libghemical/3.0.0/param_mm/prmfit/parameters4.txt
  65. share/libghemical/3.0.0/param_mm/tripos52/atomtypes.txt
  66. share/libghemical/3.0.0/param_mm/tripos52/parameters1.txt
  67. share/libghemical/3.0.0/param_mm/tripos52/parameters2.txt
  68. share/libghemical/3.0.0/param_mm/tripos52/parameters3.txt
  69. share/libghemical/3.0.0/param_mm/tripos52/parameters4.txt
  70. share/libghemical/3.0.0/param_mm/tripos52/parameters5.txt
  71. share/libghemical/3.0.0/param_sf/default/loopdip.txt
  72. share/libghemical/3.0.0/param_sf/default/looptor.txt
  73. share/libghemical/3.0.0/param_sf/default/nonbonded.txt
  74. share/locale/de/LC_MESSAGES/libghemical.mo
  75. share/locale/fi/LC_MESSAGES/libghemical.mo
  76. share/locale/mk/LC_MESSAGES/libghemical.mo
  77. share/locale/pt_BR/LC_MESSAGES/libghemical.mo
  78. share/locale/ru/LC_MESSAGES/libghemical.mo
  79. share/locale/sq/LC_MESSAGES/libghemical.mo
  80. @owner
  81. @group
  82. @mode
Collapse this list.
Dependency lines:
  • libghemical>0:science/libghemical
To install the port:
cd /usr/ports/science/libghemical/ && make install clean
To add the package, run one of these commands:
  • pkg install science/libghemical
  • pkg install libghemical
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: libghemical
Flavors: there is no flavor information for this port.
distinfo:
SHA256 (libghemical-3.0.0.tar.gz) = db8c3add0aa1f94c21016d60fa3f66fb194e56b8e9fceaa3860c603700efc3ac SIZE (libghemical-3.0.0.tar.gz) = 787947

Packages (timestamps in pop-ups are UTC):
libghemical
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest-3.0.0_20------
FreeBSD:13:quarterly-3.0.0_20------
FreeBSD:14:latest-3.0.0_20------
FreeBSD:14:quarterly-3.0.0_20------
FreeBSD:15:latest-3.0.0_20n/a-n/a---
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. obabel : science/openbabel
  2. intltool-update : textproc/intltool
  3. ld : devel/binutils
  4. gfortran12 : lang/gcc12
  5. gettext-runtime>=0.22_1 : devel/gettext-runtime
  6. msgfmt : devel/gettext-tools
  7. gmake>=4.3 : devel/gmake
  8. pkgconf>=1.3.0_1 : devel/pkgconf
  9. as : devel/binutils
  10. xorgproto>=0 : x11/xorgproto
Runtime dependencies:
  1. gfortran12 : lang/gcc12
Library dependencies:
  1. libblas.so : math/blas
  2. libint.so : science/libint
  3. libf2c.so : lang/f2c
  4. liblapack.so : math/lapack
  5. libmpqc.so : science/mpqc
  6. libintl.so : devel/gettext-runtime
  7. libGL.so : graphics/libglvnd
This port is required by:
for Libraries
  1. science/ghemical

Configuration Options:
No options to configure
Options name:
science_libghemical
USES:
fortran gettext gl gmake libtool localbase pathfix pkgconfig
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. http://bioinformatics.org/ghemical/download/current/
  2. http://bioinformatics.org/ghemical/download/release20111012/
Collapse this list.

Number of commits found: 71

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.0.0_20
01 Jan 2024 11:49:51
commit hash: f2489ab0c721f5ec60a9f8074e904cfbe5d21dfdcommit hash: f2489ab0c721f5ec60a9f8074e904cfbe5d21dfdcommit hash: f2489ab0c721f5ec60a9f8074e904cfbe5d21dfdcommit hash: f2489ab0c721f5ec60a9f8074e904cfbe5d21dfd files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: chase the upgrade of BLAS / LAPACK to 3.12.0

PR:		275860
3.0.0_19
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.0.0_18
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.0.0_18
12 Aug 2022 14:46:53
commit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5edcommit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5edcommit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5edcommit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5ed files touched by this commit
Dima Panov (fluffy) search for other commits by this committer
*/*: bump all consumers after recent boost upgrade
3.0.0_17
20 Jul 2022 14:22:51
commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.0.0_17
26 Sep 2021 17:43:55
commit hash: c0f1282a1cfc26c5d3dc6a2cbacf8f6aadb2c1c2commit hash: c0f1282a1cfc26c5d3dc6a2cbacf8f6aadb2c1c2commit hash: c0f1282a1cfc26c5d3dc6a2cbacf8f6aadb2c1c2commit hash: c0f1282a1cfc26c5d3dc6a2cbacf8f6aadb2c1c2 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/libghemical: Remove LD_PRELOAD vecause it configured now without it

PR:		258733
Reported by:	mikael
3.0.0_17
22 Jun 2021 18:53:08
commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77 files touched by this commit
Kevin Bowling (kbowling) search for other commits by this committer
graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824
3.0.0_16
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
3.0.0_16
08 Nov 2019 03:23:25
Revision:517024Original commit files touched by this commit
linimon search for other commits by this committer
Pet portlint (trailing whitespace).
3.0.0_16
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
3.0.0_15
22 Apr 2019 13:16:34
Revision:499638Original commit files touched by this commit
gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
3.0.0_14
17 Dec 2018 17:51:22
Revision:487699Original commit files touched by this commit
yuri search for other commits by this committer
science/libghemical: fix build with GCC-based architectures

Some reformatting.
Also add USES=gl.

PR:		234101
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
3.0.0_14
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
3.0.0_13
27 Aug 2018 22:56:44
Revision:478259Original commit files touched by this commit
yuri search for other commits by this committer
science/libint: Update 1.1.6 -> 1.2.1

Port changes:
* Remove USES=perl5 (not needed)
* Remove static libs
* Remove USE_GCC (not needed)
* Silence command/remove braces
* Update WWW

Take maintainership.

Bump depending ports because the library list has changed in plist.
3.0.0_12
29 Jul 2018 22:18:46
Revision:475857Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
3.0.0_11
26 Jul 2018 08:11:33
Revision:475349Original commit files touched by this commit
yuri search for other commits by this committer
science/libghemical: Fix C++11 errors on 12

Add CXXFLAGS+=-Wno-c++11-narrowing
3.0.0_11
18 Jul 2018 09:25:32
Revision:474844Original commit files touched by this commit
yuri search for other commits by this committer
science/libghemical: Use ${GCC_DEFAULT} in CONFIGURE_ENV

Improve the workaround line.
3.0.0_11
18 Jul 2018 05:28:24
Revision:474834Original commit files touched by this commit
yuri search for other commits by this committer
science/libghemical: Remove BROKEN/DEPRECATED labels

The main cause of the breakage was a libary linkage problem in science/mpqc
which is now fixed.

Other port changes:
* Add LICENSE/LICENSE_FILE
* Add missing items to LIB_DEPENDS
* Add workaround for the problem that configure fails due to the libgcc.so
  mismatch. By using CONFIGURE_ENV, preload libgcc.so from the gcc package.
* Update WWW
3.0.0_11
17 Jul 2018 09:39:32
Revision:474790Original commit files touched by this commit
yuri search for other commits by this committer
science/libghemical: Take maintainership.

It has been labeled DEPRECATED, but I will fix it.
3.0.0_11
17 Jul 2018 08:56:32
Revision:474787Original commit files touched by this commit
antoine search for other commits by this committer
Deprecate ports broken for more than 5 months
3.0.0_11
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
3.0.0_10
20 Jan 2018 07:41:40
Revision:459494Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN: fails to configure

checking for gcc... cc
checking whether the C compiler works... no
configure: error: in
`/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0':
configure: error: C compiler cannot create executables

Reported by:	pkg-fallout
3.0.0_10
10 Sep 2017 20:55:39
Revision:449591Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
3.0.0_9
23 May 2017 05:03:16
Revision:441503Original commit files touched by this commit
rezny search for other commits by this committer
Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
3.0.0_8
01 Apr 2017 15:23:32
Revision:437439Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
3.0.0_7
07 Dec 2016 13:24:57
Revision:428057Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
3.0.0_6
01 Apr 2016 14:25:18
Revision:412349Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
3.0.0_6
16 Dec 2014 22:10:24
Revision:374828Original commit files touched by this commit
pawel search for other commits by this committer
- Upadate biology/mopac to version 1.15
- Bump affected ports
- Switch ports to new mastersite, add LICENSE
- Reformat ports pkg descriptions

PR:		194493
Submitted by:	tkato432@yahoo.com
3.0.0_6
25 Sep 2014 13:56:06
Revision:369254Original commit files touched by this commit
marino search for other commits by this committer
science/mpqc: Don't override libtool -version-info, bump dependent ports

We accept SHLIB version changes when moving to USE=libtool, so stop
overriding it with the intent of prevent library version changes, which
is considered the better approach over the long term. Two ports are
dependent on mpqc, so bump them for the second time today.

requested by:	tijl@
3.0.0_5
25 Sep 2014 11:04:03
Revision:369236Original commit files touched by this commit
marino search for other commits by this committer
science: Fix mpqc, libint and unbreak ghemical, and libghemical atomically

science/ghemical would not link because libghemical.so (from science/
libghemical port) had never been properly linked.  Links to all mpqc "SC"
libraries were added to LDFLAGS to rectify this.  The configure breakage
and solution is described below.

After the version of lang/gcc was bumped from 4.7 to 4.8,
science/libghemical ceased to configure and it was marked broken.  After
recreating the conftest, it was discovered that two versions incompatible
versions of libgcc_s.so were getting pulled in by the realtime linker:
the base version and the gcc48 ports version.

The base version was getting pulled in by science/libint.  To unbreak
libghemical, libint is now built with lang/gcc.  It was necessary to
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3.0.0_4
13 Sep 2014 21:20:16
Revision:368144Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN: Fails to configure

checking for main in -llapack... yes
checking for sc-config... /usr/local/bin/sc-config
checking SC - version... no
*** Could not run SC test program, checking why...
*** The test program compiled, but did not run. This usually means
*** that the run-time linker is not finding SC or finding the wrong
*** version of SC.

Reported by:	pkg-fallout
3.0.0_4
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
3.0.0_3
06 Aug 2014 16:06:23
Revision:364199Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Switch to USES=libtool, drop .la files
- Stagify
- Strip libraries
3.0.0_2
24 Jul 2014 16:33:10
Revision:362828Original commit files touched by this commit
bapt search for other commits by this committer
Reset maintainership for ports not staged with no pending PR

With hat:	portmgr
3.0.0_2
14 Jul 2014 18:42:04
Revision:361812Original commit files touched by this commit
bapt search for other commits by this committer
Modernize LIB_DEPENDS

With hat:	portmgr
3.0.0_2
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
3.0.0_1
16 Feb 2014 17:15:32
Revision:344614Original commit files touched by this commit
tijl search for other commits by this committer
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
3.0.0_1
26 Oct 2013 00:52:36
Revision:331644Original commit files touched by this commit
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
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3.0.0
20 Sep 2013 22:48:31
Revision:327767Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
3.0.0
24 Apr 2013 07:35:41
Revision:316407Original commit files touched by this commit
ak search for other commits by this committer
- Convert USE_GETTEXT to USES (part 1)

Approved by:	portmgr (bapt)
3.0.0
23 Apr 2013 14:20:28
Revision:316355Original commit files touched by this commit
bapt search for other commits by this committer
Finish converting the whole ports tree to USES=pkgconfig
3.0.0
19 Mar 2013 13:04:31
Revision:314640Original commit files touched by this commit
eadler search for other commits by this committer
This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.

If a port used other USE_GNOME items it was untouched.
The ports that used other USES were fixed by hand.

PR:		ports/177081
Reviewed by:	bapt
Approved by:	portmgr (miwi)
3.0.0
08 Jan 2013 06:53:52
Revision:310071Original commit files touched by this commit
maho search for other commits by this committer
* Update to 3.0.0.
* Some build cleanups. [1]

Submitted by:	bapt@ [1]
2.99.1_3
07 Jan 2013 06:42:08
Revision:310024Original commit files touched by this commit
bapt search for other commits by this committer
- Add an explicit dependency on gettext to fix build on system where everything
  is built without NLS
While here:
- Trim headers
- Convert USE_GNOME=pkgconfig -> USE_PKGCONFIG= build

Approved by:	maho (maintainer)
2.99.1_3
11 Dec 2012 14:19:54
Revision:308694Original commit files touched by this commit
makc search for other commits by this committer
science/openbabel:
- Update openbabel to 2.3.2
- Switch to CMake build system
- Add PYTHON and CAIRO options
- Don't rename babel binary, mark conflict with ancient biology/babel

science/py-openbabel:
- Merge py-openbabel to openbabel

other:
- chase openbabel update
2.99.1_2
25 Aug 2011 02:01:42
Original commit files touched by this commit
maho search for other commits by this committer
Use libdata/pkgconfig instead of lib/pkgconfig,
and bump portrevision.

PR:             naddy
2.99.1_1
03 Jul 2011 13:22:25
Original commit files touched by this commit
ohauer search for other commits by this committer
 - remove MD5
2.99.1_1
23 Jun 2011 03:03:23
Original commit files touched by this commit
danfe search for other commits by this committer
Kill EOL whitespace.
2.99.1_1
29 Dec 2010 20:04:42
Original commit files touched by this commit
pgollucci search for other commits by this committer
- DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.

PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)
2.99.1_1
19 Sep 2010 05:53:44
Original commit files touched by this commit
maho search for other commits by this committer
Fix build.
2.99.1_1
15 Sep 2010 18:35:24
Original commit files touched by this commit
ade search for other commits by this committer
Autotools update.   Read ports/UPDATING 20100915 for details.

Approved by:    portmgr (for Mk/bsd.port.mk part)
Tested by:      Multiple -exp runs
2.99.1
02 Mar 2010 23:08:23
Original commit files touched by this commit
pav search for other commits by this committer
- Mark BROKEN: does not compile

Reported by:    pointyhat
Feature safe:   yes
2.99.1
06 Nov 2009 02:04:53
Original commit files touched by this commit
maho search for other commits by this committer
remove unnecessary file.

Spotted by: QAT
2.99.1
05 Nov 2009 09:16:08
Original commit files touched by this commit
maho search for other commits by this committer
Update to 2.99.1 and unbreak.

Feature safe:   yes
2.98_3
23 Sep 2009 18:38:47
Original commit files touched by this commit
pav search for other commits by this committer
- Mark BROKEN on 7.X and 8.X

Reported by:    pointyhat
Feature safe:   yes
2.98_3
13 Sep 2009 00:08:01
Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
2.98_2
14 Feb 2009 08:07:13
Original commit files touched by this commit
maho search for other commits by this committer
Fix build with gcc43.

Fix obtained from
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-August/000752.html
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-July/000742.html
.

Spotted by:     pav
2.98_2
11 Jan 2009 23:16:12
Original commit files touched by this commit
maho search for other commits by this committer
Remove CONFIGURE_ENV

Submitted by:   gerald@
2.98_2
07 Jan 2009 16:34:27
Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2.98_1
28 Aug 2008 19:25:32
Original commit files touched by this commit
gahr search for other commits by this committer
- Fix build

Reported by:    QA Tindie
2.98
22 Aug 2008 22:23:17
Original commit files touched by this commit
maho search for other commits by this committer
Update to 2.98.
2.10_4
20 Aug 2008 00:57:32
Original commit files touched by this commit
ade search for other commits by this committer
Conversion from (now defunct) autoconf-2.61 to autoconf-2.62

Tested by:      exp build run (erwin)
2.10_4
07 Jul 2008 00:08:33
Original commit files touched by this commit
beech search for other commits by this committer
Bump portrevision after openbabel update.
2.10_3
30 Sep 2007 04:47:37
Original commit files touched by this commit
linimon search for other commits by this committer
Switch autoconf dependencies from 2.53 or 2.59 to 2.61.

PR:             ports/116639
Submitted by:   aDe
2.10_2
14 Jul 2007 09:51:49
Original commit files touched by this commit
maho search for other commits by this committer
Now we use USE_FORTRAN=yes to use FORTRAN compiler.
2.10_2
17 Jan 2007 04:42:03
Original commit files touched by this commit
maho search for other commits by this committer
* Some fixes.
* Mopac depends on f2c, added -lf2c (dirty workaround), fixes libghemical.pc.
* Bump portrevision.
2.10_1
13 Jan 2007 01:31:41
Original commit files touched by this commit
maho search for other commits by this committer
* Migrate to gfortran.
* Bump port revision.
2.10
30 Nov 2006 04:44:32
Original commit files touched by this commit
maho search for other commits by this committer
Fix pkg-plist

Submitted by:   kris
2.10
30 Nov 2006 01:12:11
Original commit files touched by this commit
maho search for other commits by this committer
Update to 2.1.0
* dependency to ATLAS is now conditional.
2.00
03 Jul 2006 07:30:45
Original commit files touched by this commit
maho search for other commits by this committer
Libghemical port. This port installs support libraries of
science/ghemical port. From version 2.0, science/ghemical becomes
large, splitted into two parts. Update of ghemical port will
follow soon.

Number of commits found: 71