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Port details
massxpert 3.4.0_1 science on this many watch lists=0 search for ports that depend on this port
The massXpert software for (bio)chemists
Maintained by: vg@FreeBSD.org search for ports maintained by this maintainer
Port Added: 20 May 2010 09:43:44
License: GPLv3


The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

WWW: http://massxpert.org/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Build:
  1. devel/cmake
  2. x11/libICE
  3. x11/libSM
  4. x11/libX11
  5. x11/libXau
  6. x11/libxcb
  7. x11/libXdmcp
  8. x11/libXext
  9. x11/libXrender
  10. devel/qt4-corelib
  11. x11-toolkits/qt4-gui
  12. devel/qt4-moc
  13. devel/qmake4
  14. devel/qt4-rcc
  15. graphics/qt4-svg
  16. devel/qt4-uic
  17. textproc/qt4-xml
Required To Run:
  1. x11/libICE
  2. x11/libSM
  3. x11/libX11
  4. x11/libXau
  5. x11/libxcb
  6. x11/libXdmcp
  7. x11/libXext
  8. x11/libXrender
  9. devel/qt4-corelib
  10. x11-toolkits/qt4-gui
  11. graphics/qt4-svg
  12. textproc/qt4-xml
Required Libraries:
  1. devel/libpthread-stubs
  2. devel/pcre
  3. graphics/png
  4. print/freetype2
  5. textproc/expat2
  6. x11-fonts/fontconfig
  7. devel/gettext
  8. converters/libiconv
  9. devel/glib20
  10. devel/pcre
There are no ports dependent upon this port

To install the port: cd /usr/ports/science/massxpert/ && make install clean
To add the package: pkg install science/massxpert


Configuration Options
     No options to configure

Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/
  2. http://download.tuxfamily.org/massxpert/source/

Number of commits found: 18

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
30 Jun 2014 20:39:00
Original commit files touched by this commit  3.4.0_1
Revision:359917
vg search for other commits by this committer
- Support staging.
16 Apr 2014 18:28:50
Original commit files touched by this commit  3.4.0_1
Revision:351411
zeising search for other commits by this committer
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
(Only the first 15 lines of the commit message are shown above View all of this commit message)
22 Oct 2013 14:01:39
Original commit files touched by this commit  3.4.0
Revision:331274
amdmi3 search for other commits by this committer
- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [st])

Approved by:	portmgr (bdrewery)
20 Sep 2013 22:48:31
Original commit files touched by this commit  3.4.0
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
22 Jul 2013 14:34:23
Original commit files touched by this commit  3.4.0
Revision:323455
vg search for other commits by this committer
 - Changed my email
 - Trim Makefile headers and positions name and surname within

Approved by:	eadler, rm (mentors)
25 May 2013 14:37:03
Original commit files touched by this commit  3.4.0
Revision:319055
zeising search for other commits by this committer
The FreeBSD x11 team proudly presents
an zeising, kwm, miwi, bapt, eadler production:

Xorg 7.7

Starring:
xserver 1.12.4 (new xorg only)
Mesa 8.0.4, including libGL, libGLU and dri (new xorg only)
libX11 1.5.0
libxcb 1.9
libdrm 2.4.42 (new xorg only)
freeglut 2.8.1
Also starring:
Updates to drivers and other libraries and utilities
(Only the first 15 lines of the commit message are shown above View all of this commit message)
27 Apr 2013 18:25:25
Original commit files touched by this commit  3.4.0
Revision:316683
mva search for other commits by this committer
- Convert USE_ICONV=yes to USES=iconv
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig and
  USE_GETTEXT=yes to USES=gettext while here
24 Apr 2013 07:35:41
Original commit files touched by this commit  3.4.0
Revision:316407
ak search for other commits by this committer
- Convert USE_GETTEXT to USES (part 1)

Approved by:	portmgr (bapt)
22 Mar 2013 20:06:15
Original commit files touched by this commit  3.4.0
Revision:314960
makc search for other commits by this committer
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
09 Feb 2013 14:02:02
Original commit files touched by this commit  3.4.0
Revision:311977
miwi search for other commits by this committer
- Update to 3.4.0

PR:		175601
Submitted by:	maintainer
16 Dec 2012 20:59:40
Original commit files touched by this commit  3.3.0
Revision:309044
pawel search for other commits by this committer
- Update to version 3.3.0 [1]
- Add missing deps
- Mark MAKE_JOBS_UNSAFE
- tab -> space in WWW: line

PR:		ports/174397 [1]
Submitted by:	Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
06 Jun 2012 06:44:38
Original commit files touched by this commit  3.1.0_1
miwi search for other commits by this committer
- Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4

Review by:      bapt, David Naylor (kde team)
01 Jun 2012 05:26:28
Original commit files touched by this commit  3.1.0_1
dinoex search for other commits by this committer
- update png to 1.5.10
14 Nov 2011 03:26:46
Original commit files touched by this commit  3.1.0
rakuco search for other commits by this committer
Remove CMAKE_USE_PTHREAD from the ports using it.

This setting has not had any effect since r1.13 to bsd.cmake.mk, as it
was only useful when we supported FreeBSD < 7.

Approved by:    avilla (mentor), portmgr (miwi)
Feature safe:   yes
06 Sep 2011 16:03:47
Original commit files touched by this commit  3.1.0
dhn search for other commits by this committer
- Update to 3.1.0

PR:             ports/160515
Submitted by:   Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
31 Mar 2011 06:51:37
Original commit files touched by this commit  2.4.3
culot search for other commits by this committer
- Update to 2.4.3
- LICENSE added

PR:             ports/156059
Submitted by:   Gvozdikov Veniamin <g.veniamin AT googlemail.com> (maintainer)
27 May 2010 06:07:41
Original commit files touched by this commit  2.3.6_1
wen search for other commits by this committer
- Fix mans
- Remove USE_LDCONFIG

PR:             ports/146795
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer)
20 May 2010 09:43:14
Original commit files touched by this commit  2.3.6
wen search for other commits by this committer
The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

PR:             ports/146564
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com>

Number of commits found: 18

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