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Port details
massxpert 3.4.0 science on this many watch lists=0 search for ports that depend on this port
The massXpert software for (bio)chemists
Maintained by: g.veniamin@googlemail.com search for ports maintained by this maintainer
Port Added: 20 May 2010 09:43:44
License: GPLv3


The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

WWW: http://massxpert.org/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:
  1. devel/cmake
  2. x11/libICE
  3. x11/libSM
  4. x11/libX11
  5. x11/libXau
  6. x11/libXdmcp
  7. x11/libXext
  8. x11/libXrender
  9. devel/qt4-corelib
  10. x11-toolkits/qt4-gui
  11. devel/qt4-moc
  12. devel/qmake4
  13. devel/qt4-rcc
  14. graphics/qt4-svg
  15. devel/qt4-uic
  16. textproc/qt4-xml
Required To Run:
  1. x11/libICE
  2. x11/libSM
  3. x11/libX11
  4. x11/libXau
  5. x11/libXdmcp
  6. x11/libXext
  7. x11/libXrender
  8. devel/qt4-corelib
  9. x11-toolkits/qt4-gui
  10. graphics/qt4-svg
  11. textproc/qt4-xml
  12. devel/gio-fam-backend
Required Libraries:
  1. devel/libpthread-stubs
  2. devel/pcre
  3. graphics/png
  4. print/freetype2
  5. textproc/expat2
  6. x11-fonts/fontconfig
  7. x11/libxcb
  8. devel/gettext
  9. converters/libiconv
  10. devel/glib20
  11. devel/pcre
There are no ports dependent upon this port

To install the port: cd /usr/ports/science/massxpert/ && make install clean
To add the package: pkg_add -r massxpert


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://download.tuxfamily.org/massxpert/source/

Number of commits found: 12

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
27 Apr 2013 18:25:25
Original commit files touched by this commit  3.4.0
mva search for other commits by this committer
- Convert USE_ICONV=yes to USES=iconv
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig and
  USE_GETTEXT=yes to USES=gettext while here
24 Apr 2013 07:35:41
Original commit files touched by this commit  3.4.0
ak search for other commits by this committer
- Convert USE_GETTEXT to USES (part 1)

Approved by:	portmgr (bapt)
22 Mar 2013 20:06:15
Original commit files touched by this commit  3.4.0
makc search for other commits by this committer
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
09 Feb 2013 14:02:02
Original commit files touched by this commit  3.4.0
miwi search for other commits by this committer
- Update to 3.4.0

PR:		175601
Submitted by:	maintainer
16 Dec 2012 20:59:40
Original commit files touched by this commit  3.3.0
pawel search for other commits by this committer
- Update to version 3.3.0 [1]
- Add missing deps
- Mark MAKE_JOBS_UNSAFE
- tab -> space in WWW: line

PR:		ports/174397 [1]
Submitted by:	Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
06 Jun 2012 06:44:38
Original commit files touched by this commit  3.1.0_1
miwi search for other commits by this committer
- Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4

Review by:      bapt, David Naylor (kde team)
01 Jun 2012 05:26:28
Original commit files touched by this commit  3.1.0_1
dinoex search for other commits by this committer
- update png to 1.5.10
14 Nov 2011 03:26:46
Original commit files touched by this commit  3.1.0
rakuco search for other commits by this committer
Remove CMAKE_USE_PTHREAD from the ports using it.

This setting has not had any effect since r1.13 to bsd.cmake.mk, as it
was only useful when we supported FreeBSD < 7.

Approved by:    avilla (mentor), portmgr (miwi)
Feature safe:   yes
06 Sep 2011 16:03:47
Original commit files touched by this commit  3.1.0
dhn search for other commits by this committer
- Update to 3.1.0

PR:             ports/160515
Submitted by:   Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
31 Mar 2011 06:51:37
Original commit files touched by this commit  2.4.3
culot search for other commits by this committer
- Update to 2.4.3
- LICENSE added

PR:             ports/156059
Submitted by:   Gvozdikov Veniamin <g.veniamin AT googlemail.com> (maintainer)
27 May 2010 06:07:41
Original commit files touched by this commit  2.3.6_1
wen search for other commits by this committer
- Fix mans
- Remove USE_LDCONFIG

PR:             ports/146795
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer)
20 May 2010 09:43:14
Original commit files touched by this commit  2.3.6
wen search for other commits by this committer
The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

PR:             ports/146564
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com>

Number of commits found: 12

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