minc 1.4_2 science =0

Medical Imaging NetCDF
Maintained by: jwbacon@tds.net
Port Added: 12 Feb 2006 15:31:05
Also Listed In: biology
License: not specified in port

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MINC (Medical Imaging NetCDF) is a medical imaging data format and an 
associated set of tools and libraries. MINC was created in 1993 by Peter 
Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological 
Institute. Many others have contributed to the design and implementation 
MINC over the years.

WWW: http://www.bic.mni.mcgill.ca/software/minc/

Port maintainer: Jason W. Bacon
		 jwbacon@tds.net

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: devel/libtool
Required Libraries: science/netcdf
There are no ports dependent upon this port

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To install the port: cd /usr/ports/science/minc/ && make install clean
To add the package: pkg_add -r minc

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Configuration Options

     No options to configure

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Master Sites:

http://www.bic.mni.mcgill.ca/software/distribution/packages/

http://www.neuro.mcw.edu/~bacon/Ports/distfiles/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav

 - remove MD5

Sync to new bsd.autotools.mk

-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
-Update libtool and libltdl to 2.2.6a.
-Remove devel/libtool15 and devel/libltdl15.
-Fix ports build with libtool22/libltdl22.
-Bump ports that depend on libltdl22 due to shared library version change.
-Explain what to do update in the UPDATING.

It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop
and applications in the runtime.

With help:      marcus and kwm
Pointyhat-exp:  a few times by pav
Tested by:      pgollucci, "Romain Tartière" <romain@blogreen.org>, and
                a few MarcusCom CVS users. Also, I might have missed a few.
Repocopy by:    marcus
Approved by:    portmgr

Update maintainer's email address.  Had already been done for his
other ports.

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk

- Remove USE_GCC where it can be satisfied with base compiler on following
  FreeBSD versions: 5.3 and up, 6.x, 7.x, 8-CURRENT

- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)

science/netcdf
- Update to 3.6.2

graphics/gmt
math/grace
math/gri
math/p5-NetCDF
math/py-scientific
math/ruby-netcdf
science/gnudatalanguage
science/minc
science/minc2
science/v_sim
science/vis5d+
- Bump PORTREVISION for the changing of science/netcdf's major library version
number

PR:             111347
Submitted by:   Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
Approved by:    clsung (mentor)

Use libtool port instead of included version to avoid objformat a.out botch

Add science/minc2.

MINC (Medical Imaging NetCDF) is a medical imaging data format and an
associated set of tools and libraries. MINC was created in 1993 by Peter
Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological
Institute. Many others have contributed to the design and implementation
MINC over the years.

PR:             ports/93495
Submitted by:   Jason Bacon <bacon (at) smithers.neuro.mcw.edu>
Repocopied by:  marcus

- Fix build on 4.x
- portlint(1)

PR:             94805
Reported by:    maintainer

Conversion to a single libtool environment.

Approved by:    portmgr (kris)

MINC (Medical Imaging NetCDF) is a medical imaging data format and an
associated set of tools and libraries. MINC was created in 1993 by Peter
Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological
Institute. Many others have contributed to the design and implementation
MINC over the years.

PR:             ports/91918
Submitted by:   Jason W. Bacon <bacon (at) smithers.neuro.mcw.edu>

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

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