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Port details
minc2 2.0.18_2,1 science on this many watch lists=0 search for ports that depend on this port
Broken BROKEN: Fails to build
Ignore IGNORE: is marked as broken: Fails to build
Medical Imaging NetCDF

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 30 Apr 2006 12:09:06
Also Listed In: biology
License: BSD


MINC (Medical Imaging NetCDF) is a medical imaging data format and an 
associated set of tools and libraries. MINC was created in 1993 by Peter 
Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological 
Institute. Many others have contributed to the design and implementation 
MINC over the years.

WWW: http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC  

Port maintainer: Jason W. Bacon
		 jwbacon@tds.net
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required Libraries:
  1. science/netcdf
  2. science/hdf5
There are no ports dependent upon this port

To install the port: cd /usr/ports/science/minc2/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


Configuration Options
     No options to configure

Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/
  2. http://packages.bic.mni.mcgill.ca/tgz/
  3. http://www.nitrc.org/frs/download.php/801/

Number of commits found: 21

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Jul 2014 21:34:39
Original commit files touched by this commit  2.0.18_2,1
Revision:361133
tijl search for other commits by this committer
Convert to USES=libtool
18 May 2014 15:46:10
Original commit files touched by this commit  2.0.18_2,1
Revision:354432
antoine search for other commits by this committer
Mark BROKEN: Fails to build

libtool: compile:  cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include
-I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2
-I/usr/local/include -DH5_USE_16_API -O2 -pipe -fno-strict-aliasing -MT
libsrc/image_conversion.lo -MD -MP -MF libsrc/.deps/image_conversion.Tpo -c
libsrc/image_conversion.c  -fPIC -DPIC -o libsrc/.libs/image_conversion.o
libsrc/image_conversion.c: In function 'miicv_create':
libsrc/image_conversion.c:219: error: 'MAX_NC_OPEN' undeclared (first use in
this function)
libsrc/image_conversion.c:219: error: (Each undeclared identifier is reported
only once
libsrc/image_conversion.c:219: error: for each function it appears in.)
*** [libsrc/image_conversion.lo] Error code 1

Reported by:	pkg-fallout
03 May 2014 03:17:19
Original commit files touched by this commit  2.0.18_2,1
Revision:352855
sunpoet search for other commits by this committer
- Update to 4.3.2 (from science/netcdf4)
- Bump PORTREVISION for science/netcdf shlib change and
  dependency change from science/netcdf4 to science/netcdf [1]

Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html
Approved by:	portmgr (bapt) [1]
03 May 2014 00:55:30
Original commit files touched by this commit  2.0.18_1,1
Revision:352854
sunpoet search for other commits by this committer
- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]
29 Jan 2014 17:31:05
Original commit files touched by this commit  2.0.18,1
Revision:341763
thierry search for other commits by this committer
- Downgrade to the latest stable release;

- Release maintainership.

Since I'm there, support staging.

PR:		ports/182077
Submitted by:	Jason Bacon <jwbacon (at) tds.net> (maintainer)
06 Dec 2013 11:44:48
Original commit files touched by this commit  2.2.00_1
Revision:335733
bapt search for other commits by this committer
Mark as broken: does not build with newer hdf5 version:

wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c: In
function 'hdf_put_dimorder':
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:621:
error: too many arguments to function 'H5Acreate'
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c: In
function 'hdf_set_length':
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:928:
error: too many arguments to function 'H5Acreate'
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c: In
function 'hdf_attput':
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:1110:
warning: cast to pointer from integer of different size
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:1189:
error: too many arguments to function 'H5Acreate'
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c: In
function 'hdf_copy_attr':
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:2054:
warning: cast from pointer to integer of different size
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:2071:
error: too many arguments to function 'H5Acreate'
14 Oct 2013 06:52:32
Original commit files touched by this commit  2.2.00_1
Revision:330275
bapt search for other commits by this committer
Fix package name collision
20 Sep 2013 22:48:31
Original commit files touched by this commit  2.2.00_1
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
22 Aug 2013 23:55:13
Original commit files touched by this commit  2.2.00_1
Revision:325245
marino search for other commits by this committer
science/minc2: Switch license to BSD

The license was defined as "AS-IS" but this license has no definition in
bsd.license*.mk.  As a result, this port would not build in bulk because
there was no implied acceptance of the "AS-IS" license.  Upon
re-examination, the maintainer believes it is close enough in spirit to
BSD license to be classified as BSD.

   Copyright 1993-2000 Peter Neelin and David MacDonald, McConnell Brain
   Imaging Centre, Montreal Neurological Institute, McGill University.
   Permission to use, copy, modify, and distribute this software and its
   documentation for any purpose and without fee is hereby granted,
   provided that the above copyright notice appear in all copies. The
   author and McGill University make no representations about the
   suitability of this software for any purpose. It is provided "as is"
   without express or implied warranty.

The PORTREVISION was bumped because when a license is specified, it
modifies the pkg-plist.

PR:		181350
Approved by:	bapt/culot (mentors, implicit), jwbacon (maintainer)
10 Jul 2013 13:59:11
Original commit files touched by this commit  2.2.00
Revision:322697
thierry search for other commits by this committer
Upgrade to 2.2.00.

PR:		ports/180411
Approved by:	jwbacon (at) tds.net (maintainer)
20 Jul 2012 16:33:32
Original commit files touched by this commit  2.0.18
zeising search for other commits by this committer
Update to version 2.0.18 [1]
Fix build with clang [2]
Change WWW in pkg-descr and pkg-message to point to current web side [3]

PR:		ports/169925 [1]
Submitted by:	Jason Bacon <jwbacon@tds.net> (maintainer) [1], kwm [2], [3]
Approved by:	maintainer, kwm (mentor)
23 Sep 2011 22:26:39
Original commit files touched by this commit  2.0.09_1
amdmi3 search for other commits by this committer
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav
03 Jul 2011 13:22:25
Original commit files touched by this commit  2.0.09_1
ohauer search for other commits by this committer
 - remove MD5
04 Dec 2010 07:34:27
Original commit files touched by this commit  2.0.09_1
ade search for other commits by this committer
Sync to new bsd.autotools.mk
02 Aug 2009 19:36:34
Original commit files touched by this commit  2.0.09_1
mezz search for other commits by this committer
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
-Update libtool and libltdl to 2.2.6a.
-Remove devel/libtool15 and devel/libltdl15.
-Fix ports build with libtool22/libltdl22.
-Bump ports that depend on libltdl22 due to shared library version change.
-Explain what to do update in the UPDATING.

It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop
and applications in the runtime.

With help:      marcus and kwm
Pointyhat-exp:  a few times by pav
Tested by:      pgollucci, "Romain Tartière" <romain@blogreen.org>, and
                a few MarcusCom CVS users. Also, I might have missed a few.
Repocopy by:    marcus
Approved by:    portmgr
19 Jun 2009 20:06:31
Original commit files touched by this commit  2.0.09_1
linimon search for other commits by this committer
Update maintainer's email address.  Had already been done for his
other ports.
21 Aug 2008 06:18:49
Original commit files touched by this commit  2.0.09_1
rafan search for other commits by this committer
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk
(Only the first 15 lines of the commit message are shown above View all of this commit message)
25 Jul 2008 14:34:52
Original commit files touched by this commit  2.0.09_1
pav search for other commits by this committer
- Remove USE_GCC where it can be satisfied with base compiler on following
  FreeBSD versions: 5.3 and up, 6.x, 7.x, 8-CURRENT
10 Apr 2007 03:08:59
Original commit files touched by this commit  2.0.09_1
lwhsu search for other commits by this committer
science/netcdf
- Update to 3.6.2

graphics/gmt
math/grace
math/gri
math/p5-NetCDF
math/py-scientific
math/ruby-netcdf
science/gnudatalanguage
science/minc
science/minc2
science/v_sim
science/vis5d+
- Bump PORTREVISION for the changing of science/netcdf's major library version
number

PR:             111347
Submitted by:   Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
Approved by:    clsung (mentor)
27 Mar 2007 16:29:09
Original commit files touched by this commit  2.0.09
pav search for other commits by this committer
- Fix after objformat removal

Reported by:    pointyhat
30 Apr 2006 12:05:09
Original commit files touched by this commit  2.0.09
thierry search for other commits by this committer
Add science/minc2.

MINC (Medical Imaging NetCDF) is a medical imaging data format and an
associated set of tools and libraries. MINC was created in 1993 by Peter
Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological
Institute. Many others have contributed to the design and implementation
MINC over the years.

PR:             ports/93495
Submitted by:   Jason Bacon <bacon (at) smithers.neuro.mcw.edu>
Repocopied by:  marcus

Number of commits found: 21

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