notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Want a good monitor light? See my photosAll times are UTC
Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.

Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

Finally, under Watch Lists, click on ABI Package Subscriptions to select your ABI (e.g. FreeBSD:14:amd64) & package set (latest/quarterly) combination for a given watch list. This is what FreshPorts will look for.

Port details
namd Computer software for molecular dynamics simulation
2.12_4 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.12_4Version of this port present on the latest quarterly branch.
Ignore IGNORE: please download the release tarball of the version 2.12 (NAMD_2.12_Source.tar.gz) from https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD, put it into /usr/ports/distfiles, and run 'make' again
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-09-08 23:28:35
Last Update: 2023-04-23 09:09:58
Commit Hash: 8d3e020
License: NAMD_MOLECULAR_DYNAMICS_LICENSE
WWW:
https://www.ks.uiuc.edu/Research/namd/
Description:
NAMD is computer software for molecular dynamics simulation, written using the Charm++ parallel programming model. It is noted for its parallel efficiency and is often used to simulate large systems (millions of atoms). It has been developed by the collaboration of the Theoretical and Computational Biophysics Group (TCB) and the Parallel Programming Laboratory (PPL) at the University of Illinois at Urbana-Champaign.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (8 items)
Collapse this list.
  1. bin/flipbinpdb
  2. bin/flipdcd
  3. bin/namd2
  4. bin/psfgen
  5. bin/sortreplicas
  6. /usr/local/share/licenses/namd-2.12_4/catalog.mk
  7. /usr/local/share/licenses/namd-2.12_4/LICENSE
  8. /usr/local/share/licenses/namd-2.12_4/NAMD_MOLECULAR_DYNAMICS_LICENSE
Collapse this list.
Dependency lines:
  • namd>0:science/namd
To install the port:
cd /usr/ports/science/namd/ && make install clean
We doubt a package is available for this port because we see it marked as as:
  • Ignore
  • Package not available
Packages are normally not provided for ports that are marked as above.
To add the package, run one of these commands:
  • pkg install science/namd
  • pkg install namd
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: there is no package for this port: _LICENSE_RESTRICTED = delete-package delete-distfiles
Flavors: there is no flavor information for this port.
ONLY_FOR_ARCHS: amd64 i386
distinfo:
TIMESTAMP = 1536472466 SHA256 (NAMD_2.12_Source.tar.gz) = 436d11e4ff78136c7463d448d2eee92509a39b4c03cab8d07176bb20ddcb675a SIZE (NAMD_2.12_Source.tar.gz) = 9706667

No package information for this port in our database
Sometimes this happens. Not all ports have packages.
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. fftw3.h : math/fftw3
  3. gfortran12 : lang/gcc12
  4. gmake>=4.3 : devel/gmake
  5. python3.9 : lang/python39
  6. as : devel/binutils
Runtime dependencies:
  1. gfortran12 : lang/gcc12
Library dependencies:
  1. libck.so : net/charm
  2. libfftw3f.so : math/fftw3-float
  3. libtcl86.so : lang/tcl86
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_namd
USES:
fortran gmake localbase:ldflags python:build shebangfix tcl
FreshPorts was unable to extract/find any pkg message
Master Sites:
  1. There is no master site for this port.

Number of commits found: 14

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.12_4
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.12_3
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.12_3
25 Oct 2021 12:58:29
commit hash: 61b661339366b6ee95ca1de0667979da9240c6b8commit hash: 61b661339366b6ee95ca1de0667979da9240c6b8commit hash: 61b661339366b6ee95ca1de0667979da9240c6b8commit hash: 61b661339366b6ee95ca1de0667979da9240c6b8 files touched by this commit
Alexey Dokuchaev (danfe) search for other commits by this committer
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)

ONLY_FOR_ARCHS_REASON is used as part of the sentence and thus should
start with lower-case letter and not end with a period which is added
by the framework, similar to other knobs like BROKEN, IGNORE, et al.

While here, remove needless quoting, add missing Oxford comma, expand
contractions and jargonisms, use correct spelling for proper names.
2.12_3
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
2.12_3
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.12_3
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
2.12_2
22 Apr 2019 13:16:34
Revision:499638Original commit files touched by this commit
gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
2.12_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
2.12
10 Sep 2018 06:59:36
Revision:479364Original commit files touched by this commit
yuri search for other commits by this committer
science/namd: Remove RESTRICTED because LICENSE_PERMS is restrictive

Reported by:	mat
2.12
09 Sep 2018 17:06:49
Revision:479321Original commit files touched by this commit
yuri search for other commits by this committer
science/namd: Add IGNORE clause instead of the custom do-fetch clause for the
licensing warning

Also add RESTRICTED, and remove GIT_URL.

Reported by:	mat
2.12
09 Sep 2018 06:18:02
Revision:479268Original commit files touched by this commit
yuri search for other commits by this committer
science/namd: Downgrade 2-12-211 -> 2.12

Direct fetch from the git server might be a license violation.
Will try to get an agreement from UIUC that the previous fetch can be returned.
Not adding PORTEPOCH, because it was nothing wrong technically with 2.12.211.

Suggested by:	linimon, adamw
2.12.211
09 Sep 2018 00:57:45
Revision:479265Original commit files touched by this commit
yuri search for other commits by this committer
science/namd: Change LICENSE_PERMS: no redistribution is allowed.
2.12.211
08 Sep 2018 23:28:21
Revision:479263Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/namd: Computer software for molecular dynamics simulation

Number of commits found: 14