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Port details
p5-Chemistry-MacroMol Perl toolkit to describe macromolecules
0.06_1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.06_1Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-05-17 13:01:23
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: perl5
License: not specified in port
WWW:
https://metacpan.org/release/Chemistry-MacroMol
Description:
Chemistry-MacroMol is a toolkit includes basic objects and methods to describe macromolecules, a macromolecule is just a molecule that consists of several "domains". For example, a protein consists of aminoacid residues, or a nucleic acid consists of bases. Therefore Chemistry::MacroMol is derived from Chemistry::Mol, with additional methods to handle the domains.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (7 items)
Collapse this list.
  1. lib/perl5/site_perl/man/man3/Chemistry::Domain.3.gz
  2. lib/perl5/site_perl/man/man3/Chemistry::MacroMol.3.gz
  3. lib/perl5/site_perl/Chemistry/Domain.pm
  4. lib/perl5/site_perl/Chemistry/MacroMol.pm
  5. @owner
  6. @group
  7. @mode
Collapse this list.
Dependency lines:
  • p5-Chemistry-MacroMol>0:science/p5-Chemistry-MacroMol
To install the port:
cd /usr/ports/science/p5-Chemistry-MacroMol/ && make install clean
To add the package, run one of these commands:
  • pkg install science/p5-Chemistry-MacroMol
  • pkg install p5-Chemistry-MacroMol
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-Chemistry-MacroMol
Flavors: there is no flavor information for this port.
distinfo:
SHA256 (Chemistry-MacroMol-0.06.tar.gz) = 37c33b1a72a80905983ff1f9b373e40b7f1ea5441c2108e9f7d16d772f9e3079 SIZE (Chemistry-MacroMol-0.06.tar.gz) = 2953

Packages (timestamps in pop-ups are UTC):
p5-Chemistry-MacroMol
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.06_10.06_10.06_10.06_10.06_1-0.06_1-
FreeBSD:13:quarterly0.06_10.06_10.06_10.06_10.06_10.06_10.06_10.06_1
FreeBSD:14:latest0.06_10.06_10.06_10.06_10.06_10.06_1-0.06_1
FreeBSD:14:quarterly0.06_10.06_1-0.06_10.06_10.06_10.06_10.06_1
FreeBSD:15:latest0.06_10.06_1n/a0.06_1n/a0.06_10.06_10.06_1
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Chemistry-Mol>=0.37 : science/p5-Chemistry-Mol
  2. perl5>=5.32.r0<5.33 : lang/perl5.32
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Chemistry-Mol>=0.37 : science/p5-Chemistry-Mol
  2. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Build
  1. science/p5-Chemistry-File-PDB
  2. science/p5-Chemistry-MidasPattern
  3. science/p5-PerlMol
for Run
  1. science/p5-Chemistry-File-PDB
  2. science/p5-Chemistry-MidasPattern
  3. science/p5-PerlMol

Configuration Options:
No options to configure
Options name:
science_p5-Chemistry-MacroMol
USES:
perl5
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Chemistry/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Chemistry/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Chemistry/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Chemistry/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Chemistry/
  7. http://backpan.perl.org/modules/by-module/Chemistry/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Chemistry/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Chemistry/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Chemistry/
  12. https://www.cpan.org/modules/by-module/Chemistry/
Collapse this list.

Number of commits found: 15

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.06_1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.06_1
20 Jul 2022 14:22:51
commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.06_1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.06_1
06 Oct 2018 13:06:45
Revision:481365Original commit files touched by this commit
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
0.06_1
27 May 2018 20:15:20
Revision:470993Original commit files touched by this commit
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
0.06_1
01 Apr 2016 14:25:18
Revision:412349Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
0.06_1
26 Nov 2014 13:08:38
Revision:373448Original commit files touched by this commit
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.06
06 Nov 2013 01:32:12
Revision:332938Original commit files touched by this commit
vanilla search for other commits by this committer
Support STAGEDIR.
0.06
20 Sep 2013 22:48:31
Revision:327767Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
0.06
02 Aug 2013 18:52:11
Revision:324174Original commit files touched by this commit
mat search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
0.06
07 Dec 2012 07:13:56
Revision:308414Original commit files touched by this commit
wen search for other commits by this committer
- Trim Makefile headers
- Pass maintainership to perl@

Feature safe:	yes
0.06
21 Jan 2012 17:40:15
Original commit files touched by this commit
eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
0.06
03 Jul 2011 13:22:25
Original commit files touched by this commit
ohauer search for other commits by this committer
 - remove MD5
0.06
17 May 2009 13:00:50
Original commit files touched by this commit
miwi search for other commits by this committer
Chemistry-MacroMol is a toolkit includes basic objects and methods to
describe macromolecules, a macromolecule is just a molecule that
consists of several "domains". For example, a protein consists
of aminoacid residues, or a nucleic acid consists of bases. Therefore
Chemistry::MacroMol is derived from Chemistry::Mol, with additional
methods to handle the domains.

WWW: http://search.cpan.org/dist/Chemistry-MacroMol/

PR:             ports/134609
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 15