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Port details
py-nibabel Read/write some common neuroimaging file formats
5.2.0_1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 5.2.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-01-21 02:07:56
Last Update: 2023-12-12 21:14:13
Commit Hash: 5e276b8
Also Listed In: python
License: MIT
WWW:
https://nipy.org/nibabel/
Description:
This package provides read +/- write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD, MGH and ECAT as well as Philips PAR/REC. We can read and write FreeSurfer geometry, annotation and morphometry files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-nibabel/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-nibabel
  • pkg install py39-nibabel
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-nibabel listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-nibabel
Package flavors (<flavor>: <package>)
  • py39: py39-nibabel
distinfo:
TIMESTAMP = 1702404071 SHA256 (nibabel-5.2.0.tar.gz) = 3df8f1ab981d1bd92f4331d565528d126ab9717fdbd4cfe68f43fcd1c2bf3f52 SIZE (nibabel-5.2.0.tar.gz) = 4501846

Packages (timestamps in pop-ups are UTC):
py39-nibabel
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest5.2.0_15.2.0_1-5.2.0_15.2.0_1---
FreeBSD:13:quarterly5.2.0_15.2.0_1--5.2.0_1-5.2.0_1-
FreeBSD:14:latest5.2.0_15.2.0_1-5.2.0_15.2.0_1---
FreeBSD:14:quarterly5.2.0_15.2.0_1--5.2.0_1-5.2.0_1-
FreeBSD:15:latest5.2.0_15.2.0_1n/a5.2.0_1n/a-5.2.0_15.2.0_1
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-hatch-vcs>0 : devel/py-hatch-vcs@py39
  2. py39-hatchling>0 : devel/py-hatchling@py39
  3. python3.9 : lang/python39
  4. py39-build>=0 : devel/py-build@py39
  5. py39-installer>=0 : devel/py-installer@py39
Test dependencies:
  1. py39-pytest>=7,1 : devel/py-pytest@py39
  2. python3.9 : lang/python39
Runtime dependencies:
  1. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  2. py39-packaging>=17 : devel/py-packaging@py39
  3. python3.9 : lang/python39
This port is required by:
for Build
  1. science/py-dipy
  2. science/py-trx-python
for Run
  1. science/py-dipy
  2. science/py-nilearn

Configuration Options:
No options to configure
Options name:
science_py-nibabel
USES:
python:3.9+
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/n/nibabel/
  2. https://pypi.org/packages/source/n/nibabel/
Collapse this list.

Number of commits found: 12

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
5.2.0_1
12 Dec 2023 21:14:13
commit hash: 5e276b8b14bdcb637637955eab78baf76e435297commit hash: 5e276b8b14bdcb637637955eab78baf76e435297commit hash: 5e276b8b14bdcb637637955eab78baf76e435297commit hash: 5e276b8b14bdcb637637955eab78baf76e435297 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nibabel: Fix the failing test
5.2.0
12 Dec 2023 21:14:13
commit hash: 4937de20102462bc1f4611e6ecf6dc0dc9ba0e0ccommit hash: 4937de20102462bc1f4611e6ecf6dc0dc9ba0e0ccommit hash: 4937de20102462bc1f4611e6ecf6dc0dc9ba0e0ccommit hash: 4937de20102462bc1f4611e6ecf6dc0dc9ba0e0c files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nibabel: update 5.1.0 → 5.2.0

Reported by:	portscout
5.1.0
27 Jun 2023 07:46:41
commit hash: bd54736f9bacb3eef4033ecddad28a0089168963commit hash: bd54736f9bacb3eef4033ecddad28a0089168963commit hash: bd54736f9bacb3eef4033ecddad28a0089168963commit hash: bd54736f9bacb3eef4033ecddad28a0089168963 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nibabel: Add comment
5.1.0
27 Jun 2023 04:41:40
commit hash: 320db292d72f1efd1ad30437fe3cc04143d1cb48commit hash: 320db292d72f1efd1ad30437fe3cc04143d1cb48commit hash: 320db292d72f1efd1ad30437fe3cc04143d1cb48commit hash: 320db292d72f1efd1ad30437fe3cc04143d1cb48 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nibabel: Update 3.2.2 → 5.1.0

Reported by:	portscout
3.2.2_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
3.2.2
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.2.2
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.2.2
24 Apr 2022 19:42:19
commit hash: d16f0bcf64ed12887454d593f434bec4dacca24fcommit hash: d16f0bcf64ed12887454d593f434bec4dacca24fcommit hash: d16f0bcf64ed12887454d593f434bec4dacca24fcommit hash: d16f0bcf64ed12887454d593f434bec4dacca24f files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-nibabel: Update 3.2.1 -> 3.2.2

Reported by:	portscout
3.2.1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
3.2.1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
3.2.1
21 Jan 2021 02:07:07
Revision:562166Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/py-nibabel: Read/write some common neuroimaging file formats

Number of commits found: 12