| Port details |
- py-rmf Library to support reading and writing of Rich Molecular Format files
- 1.6.0 science
 =0      1.6.0Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2018-07-01 06:49:32
- Last Update: 2023-12-15 22:23:55
- Commit Hash: f9e5232
- Also Listed In: graphics
- License: APACHE20
- WWW:
- https://integrativemodeling.org/rmf/
- Description:
- The Python binding for Rich Molecular Format (RMF) file format library
storing hierarchical molecular data (such as atomic or coarse grained
representations of proteins), along with markup, including geometry and score
data.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}rmf>0:science/py-rmf@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/science/py-rmf/ && make install clean
- To add the package, run one of these commands:
- pkg install science/py-rmf
- pkg install py39-rmf
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-rmf listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-rmf
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1702678469
SHA256 (salilab-rmf-1.6.0_GH0.tar.gz) = 4ab69a6e1c8c67c670377b387439ebcbd6ad10226e0414ce5e9113883738c383
SIZE (salilab-rmf-1.6.0_GH0.tar.gz) = 15104419
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- swig : devel/swig
- cmake : devel/cmake-core
- ninja : devel/ninja
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- python3.9 : lang/python39
- Library dependencies:
-
- libRMF.so : science/rmf
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- science_py-rmf
- USES:
- cmake compiler:c++11-lang localbase:ldflags python shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.6.0
15 Dec 2023 22:23:55
 |
Yuri Victorovich (yuri) |
science/{,py-}rmf: update 1.5.1 → 1.6.0
Reported by: portscout |
1.5.1
27 Jun 2023 19:34:34
|
Rene Ladan (rene) |
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568> |
1.5.1
18 Jun 2023 18:23:36
|
Yuri Victorovich (yuri) |
science/{,py-}rmf: Update 1.5.0 → 1.5.1
Reported by: portscout |
1.5.0_1
23 Apr 2023 09:09:58
|
Gerald Pfeifer (gerald) |
*: Bump PORTREVISIONs for math/mpc update to 1.3.1 |
1.5.0
24 Mar 2023 06:06:11
|
Yuri Victorovich (yuri) |
science/{,py-}rmf: Update 1.4.1 → 1.5.0
Reported by: portscout |
1.4.1
26 Dec 2022 06:13:14
|
Yuri Victorovich (yuri) |
science/{,py-}rmf: Update 1.4 -> 1.4.1
Reported by: portscout |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.4_1
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.4_1
12 Aug 2022 14:46:53
|
Dima Panov (fluffy) |
*/*: bump all consumers after recent boost upgrade |
1.4
11 Mar 2022 16:59:47
|
Yuri Victorovich (yuri) |
science/{,py-}rmf: Update 1.3.1 -> 1.4
Reported by: portscout |
1.3.1
30 Dec 2021 05:15:51
|
Yuri Victorovich (yuri) |
science/{,py-}rmf: Update 1.3 -> 1.3.1 |
1.3
19 Oct 2021 08:36:47
|
Tobias Kortkamp (tobik) |
*: apply refactor.remove-consecutive-empty-lines
Submitted by: portedit |
1.3
22 Apr 2021 08:05:45
|
Yuri Victorovich (yuri) |
science/py-rmf: Update 1.2 -> 1.3
Reported by: portscout |
1.2
21 Apr 2021 08:32:09
|
Yuri Victorovich (yuri) |
science/py-rmf: Update 1.1 -> 1.2
Reported by: portscout |
1.1_1
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.1_1
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.1_1
28 Dec 2020 23:02:15
 |
antoine |
Drop python 2.7 support from a few ports
With hat: portmgr |
1.1_1
17 Jun 2020 18:17:45
|
sunpoet |
Move devel/swig30 to devel/swig and update to 4.0.1
- Do not silence installation message
- Update dependent ports:
- Fix build with swig 4.0.1
- Update *_DEPENDS
- Remove BINARY_ALIAS
Changes: http://www.swig.org/news.php
PR: 246613
Exp-run by: antoine |
1.1_1
26 Jul 2019 20:46:57
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
1.1
12 Jan 2019 23:32:10
|
linimon |
This port requires USES=compiler:c++11-lang to build on GCC-based
architectures.
PR: 234355
Submitted by: Piotr Kubaj
Approved by: maintainer |
1.1
25 Dec 2018 20:25:40
|
tcberner |
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine |
1.1
30 Aug 2018 17:34:27
|
yuri |
science/py-rmf: Correct version
It is 1.1, despite git not being able to produce a 1.1-based tag.
Therefore, leaving GH_TAGNAME and setting version to 1.1
Reported by: portscout |
g20180614
01 Jul 2018 05:22:27
|
yuri |
New port: science/py-rmf: Library to support reading and writing of Rich
Molecular Format files |
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