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Port details
vmd Molecular visualization program
1.9.3_3 science on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: license restrictions require manual fetching of the distribution source. Please visit http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD with a browser. You will be required to register, log in, and accept the University of Illinois agreement before you can download the vmd-1.9.3.src.tar.gz source file. Place this file in /usr/local/PORTS-head/distfiles and try again.
Maintainer: dbn@FreeBSD.org search for ports maintained by this maintainer
Port Added: 21 Aug 2004 16:37:02
Also Listed In: graphics python tcl tk
License: VMD BSD3CLAUSE STRIDE
VMD is a molecular visualization program for displaying, animating, and
analyzing large biomolecular systems using 3-D graphics and built-in scripting.

WWW: http://www.ks.uiuc.edu/Research/vmd/
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/vmd/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: there is no package for this port: _LICENSE_RESTRICTED = delete-package delete-distfiles

ONLY_FOR_ARCHS: i386 amd64

distinfo:

TIMESTAMP = 1482469862
SHA256 (vmd-1.9.3.src.tar.gz) = 5bdc314dc836d620fe510ed4b6c3dbe3cf66525b61680ffec4e2563cf495f128
SIZE (vmd-1.9.3.src.tar.gz) = 43981314
SHA256 (tachyon-0.99b6.tar.gz) = f4dcaf9c76a4f49310f56254390f9611c22e353947a1745a8c623e8bc8119b97
SIZE (tachyon-0.99b6.tar.gz) = 2981568
SHA256 (stride.tar.gz) = 51a8bc2988bb184bd08216124f61725225bb1a6f563bdf8cd35154cb5d621c1a
SIZE (stride.tar.gz) = 318997


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. makedepend : devel/makedepend
  2. numeric.py : math/py-numpy
  3. gmake : devel/gmake
  4. python2.7 : lang/python27
  5. libGL.so : graphics/mesa-libs
  6. glproto.pc : x11/glproto
  7. dri2proto.pc : x11/dri2proto
  8. dri3proto.pc : x11/dri3proto
  9. glproto.pc : x11/glproto
  10. dri2proto.pc : x11/dri2proto
  11. dri3proto.pc : x11/dri3proto
  12. x11.pc : x11/libX11
  13. perl5>=5.24<5.25 : lang/perl5.24
Runtime dependencies:
  1. numeric.py : math/py-numpy
  2. python2.7 : lang/python27
  3. libGL.so : graphics/mesa-libs
  4. x11.pc : x11/libX11
Library dependencies:
  1. libexpat.so : textproc/expat2
  2. libfltk.so : x11-toolkits/fltk
  3. libnetcdf.so : science/netcdf
  4. libsqlite3.so : databases/sqlite3
  5. libtk86.so : x11-toolkits/tk86
  6. libtcl86.so : lang/tcl86
  7. libGLU.so : graphics/libGLU
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
gmake perl5 python shebangfix sqlite tcl tk

Master Sites:
    There is no master site for this port.

Number of commits found: 47

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
18 Jun 2017 06:03:30
Original commit files touched by this commit  1.9.3_3
Revision:443820
dbn search for other commits by this committer
science/vmd: various fixes

 - fix spelling of VMD license [1]
 - use USES=tcl,tk instead of direct dependency
 - patch vmd to support (tcl|tk)86
 - fix shebang for tcl [1]
 - fix detection of netcdf
 - add sqlite as a dependency (for dmsplugin) [1]
 - add expact as a dependency (for hoomdplugin)
 - rework configuration:
   - explicitly list required components (CONFIGURE_ARGS)
   - call configure directly (instead of via gmake(1))
   - patch configure to accept TCLLDFLAGS and TKLDFLAGS
   - pass PREFIX as an environment variable instead of using sed(1)
   - patch Make-arch to accept environment TCLLDFLAGS and NETCDFLDFLAGS
 - add support for parallel building (except for building plugins)
 - bump PORTREVISION

PR:		219642
Reported by:	Yuri Victorovich <yuri@rawbw.com>
23 May 2017 05:03:16
Original commit files touched by this commit  1.9.3_2
Revision:441503
rezny search for other commits by this committer
Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
04 Apr 2017 05:19:53
Original commit files touched by this commit  1.9.3_1
Revision:437680
dbn search for other commits by this committer
science/vmd: unbreak build

 - Remove patches that are not required with the new sources for stride
 - Add stride license test
09 Jan 2017 06:03:05
Original commit files touched by this commit  1.9.3_1
Revision:430912
rm search for other commits by this committer
science/vmd: correct the wording of numpy keyword
09 Jan 2017 05:53:52
Original commit files touched by this commit  1.9.3_1
Revision:430911
dbn search for other commits by this committer
science/vmd: fix port to depend on numpy.

Reported by:	Ruslan Makhmatkhanov <cvs-src@yandex.ru>
08 Jan 2017 17:36:15
Original commit files touched by this commit  1.9.3
Revision:430880
dbn search for other commits by this committer
science/vmd: update to 1.9.3

 - update MASTER_SITES to use upstream stride (the old - repackages - sources
   were no longer working).
 - take maintainership: although I don't use the software I am happy to respond
   to PR's and check for updates periodically,
 - add license information for each source:
   - vmd: custom license that requires the user to explicitly download (and
          accept the license before downloading).  Mark the license as
          auto-accept here as the present of the DISTFILE will indicate that
          the license has been accepted
   - tachyon: standard 3-clause BSD license :-)
   - stride: almost BSD license, except only for academic use (i.e.
             non-commersial) and a requirement to report bugs to the author.
             Add a plain text copy of the license file to the port.
   - add missing dependencies: gl, x11
   - fix detection of python.
   - simplify configure patch.
   - update pkg-plist for changes in plugin versions.
20 Nov 2016 09:38:09
Original commit files touched by this commit  1.9.1_5
Revision:426566
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
01 Apr 2016 14:25:18
Original commit files touched by this commit  1.9.1_4
Revision:412349
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
24 Mar 2015 22:17:42
Original commit files touched by this commit  1.9.1_4
Revision:382185
marino search for other commits by this committer
3 ports categories: Remove $PTHREAD_LIBS

Categories: print, science, emulators

approved by:	PTHREAD blanket
15 Mar 2015 13:11:49
Original commit files touched by this commit  1.9.1_4
Revision:381327
marino search for other commits by this committer
science/vmd: Improve cc/gcc replacement patterns for Makefiles

PR:		197103
Submitted by:	Sakaue Mamoru
24 Feb 2015 09:46:16
Original commit files touched by this commit  1.9.1_3
Revision:379777
marino search for other commits by this committer
science/vmd: Unbreak on F10+

This patch removes the hardcoded "gcc" so that it works with USE_GCC
variable.  There is a slightly newer version of vmd available, so a
version upgrade may soon follow.

PR:		197103
Submitted by:	Sakaue Mamoru
12 Nov 2014 18:48:53
Original commit files touched by this commit  1.9.1_3
Revision:372500
antoine search for other commits by this committer
Cleanup plist
10 Sep 2014 20:50:37
Original commit files touched by this commit  1.9.1_3
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
30 Aug 2014 14:17:53
Original commit files touched by this commit  1.9.1_2
Revision:366620
marino search for other commits by this committer
Stage science/vmd

I clobbered the Makefile diff (sorry danfe@).  The entire makefile was
tabbed over 3 times.  There was also no respect for 80 columns so a good
part of the clobber came from line wrapping.  I also made $TAR use
real switches (e.g. -xzf) rather than undocumented by supported (zxf)

This is another manual package / obtain restricted data files/ only port
so I can't test much of it.

PR:		193090
Submitted by:	turutani (Kyoto)
24 Jul 2014 16:33:10
Original commit files touched by this commit  1.9.1_1
Revision:362828
bapt search for other commits by this committer
Reset maintainership for ports not staged with no pending PR

With hat:	portmgr
17 Jul 2014 08:57:51
Original commit files touched by this commit  1.9.1_1
Revision:362126
olgeni search for other commits by this committer
Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. A few Makefiles
where not included as they contain Latin-1 characters that break
the Phabricator workflow. Categories P-S.

CR:		D422
Approved by:	portmgr (bapt)
25 Jun 2014 05:35:32
Original commit files touched by this commit  1.9.1_1
Revision:359185
bapt search for other commits by this committer
Convert GMAKE to MAKE_CMD
Please note that lots of invocation of MAKE_CMD here are wrong as they do not
properly respect MAKE_ENV and friends

With hat:	portmgr
08 Jun 2014 19:51:28
Original commit files touched by this commit  1.9.1_1
Revision:357070
olgeni search for other commits by this committer
Remove all space characters from Makefile assignments.

No functional changes included.

CR:		D193 (except math/sedumi)
Approved by:	portmgr (bapt)
03 May 2014 03:17:19
Original commit files touched by this commit  1.9.1_1
Revision:352855
sunpoet search for other commits by this committer
- Update to 4.3.2 (from science/netcdf4)
- Bump PORTREVISION for science/netcdf shlib change and
  dependency change from science/netcdf4 to science/netcdf [1]

Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html
Approved by:	portmgr (bapt) [1]
20 Sep 2013 22:48:31
Original commit files touched by this commit  1.9.1
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
16 Sep 2013 10:58:05
Original commit files touched by this commit  1.9.1
Revision:327380
az search for other commits by this committer
- convert to the new perl5 framework
- convert USE_GMAKE to Uses

Approved by:	portmgr (bapt@, blanket)
29 Aug 2013 14:16:03
Original commit files touched by this commit  1.9.1
Revision:325598
bdrewery search for other commits by this committer
- Remove bogus conditional IGNORE for PACKAGE_BUILDING; these should
  be IGNOREd regardless of PACKAGE_BUILDING. Soem have no MASTER_SITES
  and require manual fetching, others are already marked RESTRICTED.
- Trim headers
- Convert some pre-fetch errors into IGNORE
- Remove needless quoting in java/jdk7-doc IGNORE

With hat:	portmgr
17 Mar 2013 16:44:03
Original commit files touched by this commit  1.9.1
Revision:314460
eadler search for other commits by this committer
Fix minor nit: use the canconical FreeBSD.org form for email addresses.
This was causing me issues when attempting to gather certain statistics.

While here trim header

Approved by:	miwi, adrian, tj
No objection from:	db, bjk, cperciva, scheidell, osa
17 Mar 2013 14:20:20
Original commit files touched by this commit  1.9.1
Revision:314445
danfe search for other commits by this committer
In categories starting with [n-s], remove empty lines (and also few cases of
trailing slashes) from pkg-plist.
23 Apr 2012 04:48:04
Original commit files touched by this commit  1.9.1
hrs search for other commits by this committer
Update to 1.9.1.

Submitted by:   bjk
20 Dec 2011 19:33:30
Original commit files touched by this commit  1.8.7_3
jgh search for other commits by this committer
re-assignment of echo_msg breaks 'make readme'
unbreak

PR: ports/163257
Submitted by: Jason Helfman <jhelfman@experts-exchange.com>
Approved by: maintainer, crees (mentor)
18 Dec 2010 09:24:21
Original commit files touched by this commit  1.8.7_3
nivit search for other commits by this committer
- Add files/patch-bin_vmd.csh, files/patch-bin_vmd.sh
  to fix a runtime error (the "ARCH" value is not set)
- Bump PORTREVISION
- Remove MD5 checksum from distinfo
- Set ONLY_FOR_ARCHS (i386 and amd64)

PR:             ports/152955
Submitted by:   Benjamin Kaduk <kaduk-fbsd at mit.edu> (maintainer)
28 Mar 2010 06:47:48
Original commit files touched by this commit  1.8.7_2
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
23 Mar 2010 21:14:39
Original commit files touched by this commit  1.8.7_1
gahr search for other commits by this committer
- Chase x11-toolkits/fltk update
22 Feb 2010 19:58:52
Original commit files touched by this commit  1.8.7
wxs search for other commits by this committer
- Remove comments from IGNORE section. Left in by mistake with last commit.

Feature safe:   yes
22 Feb 2010 14:22:45
Original commit files touched by this commit  1.8.7
wxs search for other commits by this committer
- Update to 1.8.7
- Pass maintainer to submitter

PR:             ports/142513
Submitted by:   Ben Kaduk <kaduk@mit.edu>
Feature safe:   yes
05 Feb 2010 11:46:55
Original commit files touched by this commit  1.8.3_4
dinoex search for other commits by this committer
- update to jpeg-8
31 Jul 2009 13:57:52
Original commit files touched by this commit  1.8.3_3
dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
23 May 2008 08:33:23
Original commit files touched by this commit  1.8.3_2
flz search for other commits by this committer
Relinquish maintainership at maintainer's request.

Approved by:    portmgr (self)
19 Apr 2008 17:56:05
Original commit files touched by this commit  1.8.3_2
  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
09 Apr 2008 13:42:26
Original commit files touched by this commit  1.8.3_1
pav search for other commits by this committer
- Move from versioned tcl/tk CATEGORIES to simple tcl and tk categories

With hat:       portmgr
19 May 2007 20:32:57
Original commit files touched by this commit  1.8.3_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
03 Sep 2006 17:34:12
Original commit files touched by this commit  1.8.3
kris search for other commits by this committer
NO_PACKAGE and NO_CDROM are superfluous here
13 May 2006 04:15:53
Original commit files touched by this commit  1.8.3
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with S
07 Oct 2005 17:44:08
Original commit files touched by this commit  1.8.3
pav search for other commits by this committer
- Group master sites with distfiles

PR:             ports/87078
Submitted by:   Sangwoo Shim <borishim@gmail.com> (maintainer)
21 Sep 2005 19:51:30
Original commit files touched by this commit  1.8.3
arved search for other commits by this committer
Add B-Dep on imake
Update Maintainer email

PR:             86419
Submitted by:   Sangwoo Shim <sangwoos@gmail.com>
06 May 2005 15:19:35
Original commit files touched by this commit  1.8.3
thierry search for other commits by this committer
Upgrade to 1.8.3.

PR:             ports/80682
Submitted by:   maintainer.
14 Mar 2005 12:21:32
Original commit files touched by this commit  1.8.2_2
flz search for other commits by this committer
- Fix build/run on amd64.

PR:             ports/76941
Submitted by:   Sangwoo Shim <ssw@neo.redjade.org> (maintainer)
15 Feb 2005 07:01:29
Original commit files touched by this commit  1.8.2_2
kris search for other commits by this committer
Reassign maintainer to Sangwoo Shim <ssw@neo.redjade.org>

Requested by:   old maintainer
30 Jan 2005 22:42:12
Original commit files touched by this commit  1.8.2_2
thierry search for other commits by this committer
Add missing files.

PR:             ports/75342
Submitted by:   maintainer.
03 Sep 2004 09:02:31
Original commit files touched by this commit  1.8.2_1
vs search for other commits by this committer
Fix build in presence of x11/nvidia-driver

PR:             ports/71052
Submitted by:   Stephen Montgomery-Smith (maintainer)
21 Aug 2004 16:34:57
Original commit files touched by this commit  1.8.2
pav search for other commits by this committer
Add vmd, a molecular visualization program for displaying, animating, and
analyzing large biomolecular systems using 3-D graphics and built-in scripting.

PR:             ports/70509
Submitted by:   Stephen Montgomery-Smith <stephen@math.missouri.edu>

Number of commits found: 47

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