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Number of ports: 7
consed Graphical tool for editing Phrap assemblies
27.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Broken BROKEN: Unfetchable
Ignore IGNORE: is marked as broken: Unfetchable
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request access permission via e-mail to get the tarball. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2015-04-13 15:49:38
License: not specified in port
SVNWeb : Homepage : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/consed/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


mrbayes Bayesian inference of phylogeny
3.1.2_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-08-15 17:37:37
License: not specified in port
SVNWeb : Homepage : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/mrbayes/ && make install clean
To add the package: pkg install biology/mrbayes


muscle MUltiple Sequence Comparison by Log-Expectation
3.8.31 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-06-17 22:36:06
License: not specified in port
SVNWeb : Homepage : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/muscle/ && make install clean
To add the package: pkg install biology/muscle


njplot Phylogenetic tree drawing program capable of interactive manipulation
2.1_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Broken BROKEN: Unfetchable
Ignore IGNORE: is marked as broken: Unfetchable
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2015-04-05 18:55:36
License: not specified in port
SVNWeb : Homepage : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/njplot/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


phrap Phrap is a program for assembling shotgun DNA sequence data
1.090518 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: you must request the source code \(distrib.tar.gz\) via e-mail, place it manually in /usr/local/PORTS-head/distfiles/phrap, and then try it again
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-10-16 09:55:30
License: not specified in port
SVNWeb : Homepage : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/phrap/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


phred Base calling and quality value assignment on DNA sequencing
0.020425.c biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-08-23 19:04:58
License: not specified in port
SVNWeb : Homepage : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/phred/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


velvet Sequence assembler for very short reads
1.2.10_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2015-01-19 17:43:58
License: not specified in port
SVNWeb : Homepage : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/velvet/ && make install clean
To add the package: pkg install biology/velvet


Number of ports: 7
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