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Number of ports: 7
consed 27.0 biology search for ports that depend on this port
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request access permission via e-mail to get the tarball. Free for academic use.
Graphical tool for editing Phrap assemblies
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-08-23 19:04:58
License: not specified in port
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/consed/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


mrbayes 3.1.2_1 biology search for ports that depend on this port
Bayesian inference of phylogeny
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-08-15 17:37:37
License: not specified in port
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/mrbayes/ && make install clean
To add the package: pkg install biology/mrbayes


muscle 3.8.31 biology search for ports that depend on this port
MUltiple Sequence Comparison by Log-Expectation
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-06-17 22:36:06
License: not specified in port
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/muscle/ && make install clean
To add the package: pkg install biology/muscle


njplot 2.1_3 biology search for ports that depend on this port
Phylogenetic tree drawing program capable of interactive manipulation
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-06-01 12:26:39
License: not specified in port
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/njplot/ && make install clean
To add the package: pkg install biology/njplot


phrap 1.090518 biology search for ports that depend on this port
Ignore IGNORE: you must request the source code \(distrib.tar.gz\) via e-mail, place it manually in /usr/local/PORTS-head/distfiles/phrap, and then try it again
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Phrap is a program for assembling shotgun DNA sequence data
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-08-23 19:04:58
License: not specified in port
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/phrap/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


phred 0.020425.c biology search for ports that depend on this port
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Base calling and quality value assignment on DNA sequencing
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-08-23 19:04:58
License: not specified in port
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/phred/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


velvet 1.2.10_1 biology search for ports that depend on this port
Sequence assembler for very short reads
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-07-29 20:11:53
License: not specified in port
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/velvet/ && make install clean
To add the package: pkg install biology/velvet


Number of ports: 7
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