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Number of ports: 6
consed Graphical tool for editing Phrap assemblies
27.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request access permission via e-mail to get the tarball. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2016-04-01 14:29:17
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/consed/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: consed

distinfo:

SHA256 (consed_linux.tar.gz) = 8038d2b94078ba918e97785fc7497252139029281000f1c54ff9dd1ec70e05fc
SIZE (consed_linux.tar.gz) = 34390726

mrbayes Bayesian inference of phylogeny
3.1.2_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-08-15 17:37:37
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/mrbayes/ && make install clean
To add the package: pkg install mrbayes

PKGNAME: mrbayes

distinfo:

SHA256 (mrbayes-3.1.2.tar.gz) = c60253de1980c9f0a0eb684fffe7ba428fda7c39a3edcb6acf384b5e1443f2f4
SIZE (mrbayes-3.1.2.tar.gz) = 545968

muscle MUltiple Sequence Comparison by Log-Expectation
3.8.31 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2015-12-13 16:07:28
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/muscle/ && make install clean
To add the package: pkg install muscle

PKGNAME: muscle

distinfo:

SHA256 (muscle3.8.31_src.tar.gz) = 43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad
SIZE (muscle3.8.31_src.tar.gz) = 515267

phrap Phrap is a program for assembling shotgun DNA sequence data
1.090518 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: you must request the source code \(distrib.tar.gz\) via e-mail, place it manually in /usr/local/PORTS-head/distfiles/phrap, and then try it again
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-10-16 09:55:30
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/phrap/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: phrap

distinfo:

SHA256 (phrap/distrib.tar.gz) = 81f50c4410e8604cdefcc34ef6dc7b037be3bb45b94c439611a5590c1cf83665
SIZE (phrap/distrib.tar.gz) = 333159

phred Base calling and quality value assignment on DNA sequencing
0.020425.c biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2014-08-23 19:04:58
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/phred/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: phred

distinfo:

SHA256 (phred-dist-020425.c-acd.tar.Z) = c7a7773447376c024212b680e1ce1e52c30ad8e18dee317ba863bc10db94f6c9
SIZE (phred-dist-020425.c-acd.tar.Z) = 547645

velvet Sequence assembler for very short reads
1.2.10_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last commit date: 2015-01-19 17:43:58
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/velvet/ && make install clean
To add the package: pkg install velvet

PKGNAME: velvet

distinfo:

SHA256 (velvet_1.2.10.tgz) = 884dd488c2d12f1f89cdc530a266af5d3106965f21ab9149e8cb5c633c977640
SIZE (velvet_1.2.10.tgz) = 18818559

Number of ports: 6
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