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Category listing - biology
Click to add this to your default watch list[s] Software related to biology.- Number of ports in this category: 141

Ports marked with a * actually reside within another category but have biology listed as a secondary category.


Result Page: 1  2   Next
seaview Multiple DNA/protein sequence alignment editor
4.6.2,1 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: bofh@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: GPLv3
seqan C++ Sequence Analysis Template Library
2.2.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: h2+fbsdports@fsfe.org search for ports maintained by this maintainer
Port Added: 06 Jun 2012 17:52:27
License: BSD3CLAUSE
seqan-apps Official Bioinformatic applications based on the SeqAn library
2.2.0_8 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: h2+fbsdports@fsfe.org search for ports maintained by this maintainer
Port Added: 10 May 2016 00:52:12
License: BSD3CLAUSE LGPL3 GPLv3
seqan1 C++ Sequence Analysis Library
1.3.1_4 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: h2+fbsdports@fsfe.org search for ports maintained by this maintainer
Port Added: 10 May 2016 01:05:34
License: BSD3CLAUSE
seqio Set of C functions which can read/write biological sequence files
1.2.2_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 Aug 2001 09:07:26
License: not specified in port
seqtools Tools for visualising sequence alignments
4.44.1_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: pi@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Nov 2013 11:01:14
License: GPLv3
sim4 Algorithm for aligning expressed DNA with genomic sequences
2003.09.21_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 27 Jul 2000 11:33:01
License: GPLv2
slclust Single-linkage clustering with Jaccard similarity
2010.02.02 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: bacon4000@gmail.com search for ports maintained by this maintainer
Port Added: 23 Mar 2016 11:00:52
License: ART10
ssaha Very fast matching and alignment of DNA sequences
3.1c_5 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Broken BROKEN: No public distfiles
Ignore IGNORE: is marked as broken: No public distfiles

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 21 Jun 2008 00:02:14
License: not specified in port
tRNAscan-SE Improved tool for transfer RNA detection
1.23_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Broken BROKEN: No public distfiles
Ignore IGNORE: is marked as broken: No public distfiles

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 27 Mar 2002 14:19:04
License: not specified in port
t_coffee Multiple DNA or protein sequence alignment package
9.03_6 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 25 Jan 2002 11:58:16
License: GPLv2
tinker General purpose molecular modelling package
7.1.3_3 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Restricted RESTRICTED: author requests no distribution except from his FTP site

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: tinker
treepuzzle Maximum likelihood phylogeny reconstruction using quartets
5.2 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jan.lentfer@web.de search for ports maintained by this maintainer
Port Added: 20 Nov 2002 09:04:07
License: not specified in port
trimmomatic Flexible read trimming tool for Illumina NGS data
0.35 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: bacon4000@gmail.com search for ports maintained by this maintainer
Port Added: 17 Mar 2016 08:21:26
Also Listed In: java
License: GPLv3
ugene Free, open-source, cross-platform bioinformatics toolkit
1.22.0_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: h2+fbsdports@fsfe.org search for ports maintained by this maintainer
Port Added: 23 Feb 2013 04:51:12
Also Listed In: science
License: GPLv2
vcftools Tools for working with VCF genomics files
0.1.15 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: bacon4000@gmail.com search for ports maintained by this maintainer
Port Added: 26 Feb 2016 17:08:07
License: LGPL3
velvet Sequence assembler for very short reads
1.2.10_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 07 Nov 2009 01:24:24
License: not specified in port
wise Intelligent algorithms for DNA searches
2.4.1_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Sep 2002 13:59:05
License: not specified in port
xmolwt Calculate atom weight and percent of each element for a given formula
0.7_7 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port

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