notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)Want a good monitor light? See my photosAll times are UTC		 Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.

Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

Finally, under Watch Lists, click on ABI Package Subscriptions to select your ABI (e.g. FreeBSD:14:amd64) & package set (latest/quarterly) combination for a given watch list. This is what FreshPorts will look for.

Category listing - biology
Software related to biology. - Number of ports in this category): 264

Ports marked with a * actually reside within another category but have biology listed as a secondary category.

libsedml C++ SED-ML library
2.0.32 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.32Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-09-19 18:18:23
Also Listed In: devel
License: BSD2CLAUSE
Dependency lines:
  • libsedml>0:biology/libsedml
linux-foldingathome Folding@home Client
7.6.21 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 7.6.21Version of this port present on the latest quarterly branch.
Maintainer: 0mp@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-08-28 22:34:01
People watching this port, also watch:: p5-Gtk2, python
Also Listed In: linux
License: FAHSL
Dependency lines:
  • linux-foldingathome>0:biology/linux-foldingathome
locarna LocARNA provides several tools for the structural analysis of RNA
2.0.0_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.0_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-07-16 21:57:10
License: GPLv3
Dependency lines:
  • locarna>0:biology/locarna
mafft Multiple alignment program for amino acid or nucleotide sequences
7.267_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 7.267_1Version of this port present on the latest quarterly branch.
Maintainer: cartwright@asu.edu search for ports maintained by this maintainer
Port Added: 2006-03-15 10:41:45
License: BSD2CLAUSE
Dependency lines:
  • mafft>0:biology/mafft
mapm3 Constructs linkage maps of markers segregating in experimental crosses
3.0_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.0_1Version of this port present on the latest quarterly branch.
Maintainer: tphilipp@potion-studios.com search for ports maintained by this maintainer
Port Added: 2008-04-06 04:49:23
License: MAPMAKER
Dependency lines:
  • mapm3>0:biology/mapm3
mashmap Fast approximate aligner for long DNA sequences
3.1.3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.1.3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-07-11 01:45:07
License: PD
Dependency lines:
  • mashmap>0:biology/mashmap
megahit Ultra-fast single-node large and complex metagenomics assembly
1.2.9_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.9_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-11-22 16:42:09
License: GPLv3
Dependency lines:
  • megahit>0:biology/megahit
metaeuk Gene discovery and annotation for large-scale eukaryotic metagenomics
6_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 6_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-11-26 11:18:05
License: GPLv3
Dependency lines:
  • metaeuk>0:biology/metaeuk
migrate Program to estimate population sizes and migration rates
5.0.6_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 5.0.6_2Version of this port present on the latest quarterly branch.
Maintainer: eduardo@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2001-08-06 10:07:46
License: MIT
Dependency lines:
  • migrate>0:biology/migrate
minc2 Medical Imaging NetCDF
2.2.00_15,1* search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.2.00_15,1Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-04-30 12:09:06
Also Listed In: science
License: MIT
Dependency lines:
  • minc2>0:science/minc2
minimap2 Pairwise aligner for genomic and spliced nucleotide sequences
2.28_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.27_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-04-24 18:04:07
License: MIT
Dependency lines:
  • minimap2>0:biology/minimap2
mmseqs2 Ultra fast and sensitive sequence search and clustering suite
13.45111_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 13.45111_2Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-06-24 17:33:13
License: GPLv3
Dependency lines:
  • MMseqs2>0:biology/mmseqs2
mmtf-cpp C++ MMTF format API, decoder and encoder, for molecular structures
1.1.0_1* search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.1.0_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-02-16 10:48:32
Also Listed In: science
License: MIT
Dependency lines:
  • mmtf-cpp>0:science/mmtf-cpp
molden Display molecular orbitals and electron densities in 2D and 3D
7.1_1,1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 7.1_1,1Version of this port present on the latest quarterly branch.
Maintainer: jmd@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: Molden
Dependency lines:
  • molden>0:biology/molden
mothur Software for bioinformatics of the microbial ecology community
1.48.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.48.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-05-20 17:59:35
License: GPLv3
Dependency lines:
  • mothur>0:biology/mothur
mrbayes Bayesian inference of phylogeny
3.2.7_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.2.7_2Version of this port present on the latest quarterly branch.
Maintainer: mzaki@e-mail.ne.jp search for ports maintained by this maintainer
Port Added: 2007-12-15 15:13:49
License: GPLv3
Dependency lines:
  • mrbayes>0:biology/mrbayes
mummer Modular system for rapid whole genome alignment
4.0.0.b2.2_3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.0.0.b2.2_3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2007-12-14 20:56:11
License: ART10
Dependency lines:
  • mummer>0:biology/mummer
muscle MUltiple Sequence Comparison by Log-Expectation
3.8.1551 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.8.1551Version of this port present on the latest quarterly branch.
Maintainer: mzaki@e-mail.ne.jp search for ports maintained by this maintainer
Port Added: 2008-05-14 13:52:50
License: PD
Dependency lines:
  • muscle>0:biology/muscle
ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
2.14.1_3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.14.1_3Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2014-12-30 20:03:26
People watching this port, also watch:: cytoscape, openjdk8, tmux, xen-kernel, python311
Also Listed In: perl5 python
License: PD
Dependency lines:
  • ncbi-blast+>0:biology/ncbi-blast+
ncbi-cxx-toolkit NCBI C++ Toolkit
28.0.3_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 28.0.2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-08 07:55:03
Also Listed In: devel science
License: PD
Dependency lines:
  • ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit
ncbi-entrez-direct Access to the NCBI's suite of interconnected databases
14.9.20210423_20 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 14.9.20210423_20Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-04-24 23:42:15
Also Listed In: perl5
License: PD
Dependency lines:
  • ncbi-entrez-direct>0:biology/ncbi-entrez-direct
ncbi-toolkit NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
2017.01.06_9 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2017.01.06_9Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-10-29 10:56:24
People watching this port, also watch:: zip, pcre, desktop-file-utils, xorg-fonts-miscbitmaps, libIDL
License: not specified in port
Dependency lines:
  • ncbi-toolkit>0:biology/ncbi-toolkit
ncbi-vdb NCBI's virtualized back-end for accessing Sequence Read Archive
2.11.0_6 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.11.0_6Version of this port present on the latest quarterly branch.
Maintainer: mzaki@niid.go.jp search for ports maintained by this maintainer
Port Added: 2021-04-12 09:30:06
License: PD
Dependency lines:
  • ncbi-vdb>0:biology/ncbi-vdb
nest Simulator for spiking neural network models
3.7* search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.5_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-05-11 20:30:18
Also Listed In: science
License: GPLv2
Dependency lines:
  • nest>0:science/nest
ngs-sdk Tools and libraries for using data in the INSDC Sequence Read Archives
3.0.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.0.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-06-10 23:58:19
License: PD
Dependency lines:
  • ngs-sdk>0:biology/ngs-sdk
p5-AcePerl Perl5 interface to the ACEDB genome database system
1.92_5 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.92_5Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-07-28 10:16:10
People watching this port, also watch:: libao, p5-IO-Multiplex, python, p5-Time-Piece
Also Listed In: databases perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-AcePerl>0:biology/p5-AcePerl
p5-Bio-ASN1-EntrezGene Regular expression-based Perl Parser for NCBI Entrez Gene
1.73_2,1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.73_2,1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2005-10-15 20:11:03
People watching this port, also watch:: p5-Syntax-Highlight-Perl-Improved, py39-biopython, p5-XML-DOM-XPath
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-ASN1-EntrezGene>0:biology/p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster BioPerl cluster modules
1.7.3_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.7.3_1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-02-20 20:47:05
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-Cluster>0:biology/p5-Bio-Cluster
p5-Bio-Coordinate Modules for working with biological coordinates
1.007001 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.007001Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-12-19 16:00:37
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-Coordinate>0:biology/p5-Bio-Coordinate
p5-Bio-DB-EMBL Database object interface for EMBL entry retrieval
1.7.4 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.7.4Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-12-08 16:52:22
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-DB-EMBL>0:biology/p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper Collection of routines useful for queries to NCBI databases
1.7.8 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.7.8Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-12-08 16:52:43
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-DB-NCBIHelper>0:biology/p5-Bio-DB-NCBIHelper
p5-Bio-Das Client-side library for Distributed Genome Annotation System
1.17_4 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.17_4Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2005-09-01 13:10:39
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-Das>0:biology/p5-Bio-Das
p5-Bio-Das-Lite Perl extension for the DAS (HTTP+XML) Protocol
2.11_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.11_1Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2010-03-01 09:16:56
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-Das-Lite>0:biology/p5-Bio-Das-Lite
p5-Bio-FeatureIO Handler for FeatureIO
1.6.905 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.6.905Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-09-15 19:17:29
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-FeatureIO>0:biology/p5-Bio-FeatureIO
p5-Bio-GFF3 Fast low-level functions for parsing and formatting GFF3
2.0_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0_2Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2011-04-22 08:51:49
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-GFF3>0:biology/p5-Bio-GFF3
p5-Bio-Glite Perl Interface to G-language
0.10_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.10_2Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-04-02 18:25:38
Also Listed In: perl5
License: not specified in port
Dependency lines:
  • p5-Bio-Glite>0:biology/p5-Bio-Glite
p5-Bio-Graphics Generate GD Images of Bio::Seq Objects
2.40_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.40_2Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-03-10 18:52:27
People watching this port, also watch:: mkvtoolnix, rubygem-twitter4r, libunwind, py39-venusian
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-Graphics>0:biology/p5-Bio-Graphics
p5-Bio-MAGETAB Data model and utility API for the MAGE-TAB format
1.31_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.31_2Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-07-01 09:03:56
Also Listed In: perl5
License: GPLv2
Dependency lines:
  • p5-Bio-MAGETAB>0:biology/p5-Bio-MAGETAB
p5-Bio-NEXUS Object-oriented Perl API for the NEXUS file format
0.78_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.78_1Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-08-22 20:40:26
Also Listed In: perl5
License: not specified in port
Dependency lines:
  • p5-Bio-NEXUS>0:biology/p5-Bio-NEXUS
p5-Bio-Phylo Phylogenetic analysis using Perl
2.0.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.1Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-05-13 16:50:16
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-Phylo>0:biology/p5-Bio-Phylo
p5-Bio-SCF Read and Update SCF Chromatographic Sequence Files
1.03_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.03_2Version of this port present on the latest quarterly branch.
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-08-28 23:38:55
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-SCF>0:biology/p5-Bio-SCF
p5-Bio-Variation BioPerl variation-related functionality
1.7.5 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.7.5Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-12-08 16:53:05
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-Bio-Variation>0:biology/p5-Bio-Variation
p5-BioPerl Collection of Perl modules for bioinformatics
1.007008 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.007008Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-12-18 15:27:08
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-BioPerl>0:biology/p5-BioPerl
p5-BioPerl-Run Wrapper modules for common bioinformatics tools
1.007003 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.007003Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-12-18 15:29:01
Also Listed In: perl5
License: ART10 GPLv1+
Dependency lines:
  • p5-BioPerl-Run>0:biology/p5-BioPerl-Run
p5-TrimGalore Wrapper around Cutadapt and FastQC for adapter and quality trimming
0.6.5 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.6.5Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-12-09 13:23:40
Also Listed In: perl5 python
License: GPLv3
Dependency lines:
  • p5-TrimGalore>0:biology/p5-TrimGalore
p5-transdecoder Identify candidate coding regions within transcript sequences
5.7.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 5.7.1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-03-16 20:12:42
Also Listed In: perl5
License: BSD3CLAUSE
Dependency lines:
  • p5-transdecoder>0:biology/p5-transdecoder
paml Phylogenetic Analysis by Maximum Likelihood (PAML)
4.10.7 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.10.7Version of this port present on the latest quarterly branch.
Maintainer: jrm@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-07-10 00:21:06
People watching this port, also watch:: tmux, font-misc-meltho, xclock, p5-Net-HTTP
License: GPLv3
Dependency lines:
  • paml>0:biology/paml
pbbam PacBio BAM C++ library, with SWIG bindings
0.18.0_8 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.18.0_8Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-23 16:08:32
License: BSD3CLAUSE
Dependency lines:
  • pbbam>0:biology/pbbam
pbseqan Pacific Biosciences patched and stripped down SeqAn
g20171011 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout g20171011Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Upstream merged into SeqAn project: Use biology/seqan
Expiration Date EXPIRATION DATE: 2024-05-05
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-21 17:21:58
License: BSD3CLAUSE
Dependency lines:
  • pbseqan>0:biology/pbseqan
peak-classifier Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
0.1.4.13_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.4.13_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-06-14 16:45:08
License: BSD2CLAUSE
Dependency lines:
  • peak-classifier>0:biology/peak-classifier
pear-merger Memory-efficient and highly accurate paired-end read merger
0.9.6_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.9.6_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-04 17:21:55
License: CC-BY-NC-SA-3.0
Dependency lines:
  • pear-merger>0:biology/pear-merger
phrap Program for assembling shotgun DNA sequence data
1.090518 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.090518Version of this port present on the latest quarterly branch.
Ignore IGNORE: you must request the source code \(distrib.tar.gz\) via e-mail, place it manually in /usr/ports/distfiles/phrap, and then try it again
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 2008-05-24 07:03:43
License: PHRAP
Dependency lines:
  • phrap>0:biology/phrap
phred Base calling and quality value assignment on DNA sequencing
0.020425.c search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.020425.cVersion of this port present on the latest quarterly branch.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 2008-05-24 07:05:09
License: PHRED
Dependency lines:
  • phred>0:biology/phred
phyml Simple, fast, and accurate algorithm to estimate large phylogenies
3.3.20220408_1,1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.3.20220408_1,1Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-07-21 01:10:33
License: GPLv3
Dependency lines:
  • phyml>0:biology/phyml
picard-tools CLI tools for manipulating high-throughput sequencing (HTS) data
2.22.9 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.22.9Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-06-13 13:54:53
Also Listed In: java
License: MIT
Dependency lines:
  • picard-tools>0:biology/picard-tools
plink Whole genome association analysis toolset
1.90.b6.17_3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.90.b6.17_3Version of this port present on the latest quarterly branch.
Maintainer: mzaki@e-mail.ne.jp search for ports maintained by this maintainer
Port Added: 2012-09-27 10:00:09
License: GPLv3
Dependency lines:
  • plink>0:biology/plink
pooler Optimise DNA sequencing primer-set combinations
1.88_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.88_1Version of this port present on the latest quarterly branch.
Maintainer: ssb22@cam.ac.uk search for ports maintained by this maintainer
Port Added: 2020-11-15 19:32:44
License: APACHE20
Dependency lines:
  • pooler>0:biology/pooler
primer3 Primer3 helps to choose primers for PCR reactions
2.3.6 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.3.6Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2002-09-17 15:31:31
License: GPLv2
Dependency lines:
  • primer3>0:biology/primer3
prodigal Protein-coding gene prediction for prokaryotic genomes
2.6.3.16 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.6.3.16Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-02-03 18:08:28
License: GPLv3
Dependency lines:
  • prodigal>0:biology/prodigal
prodigy-lig Prediction of protein-small molecule binding affinities
1.1.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.1.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-02-03 18:49:38
Also Listed In: python
License: APACHE20
Dependency lines:
  • prodigy-lig>0:biology/prodigy-lig
protomol OO, component based, framework for molecular dynamics (MD) simulations
2.0.3_15 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.3_15Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-05-05 20:12:57
License: GPLv2
Dependency lines:
  • protomol>0:biology/protomol
psi88 Plotting wavefunctions (molecular orbitals) in 3D
1.0_17 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.0_17Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
Dependency lines:
  • psi88>0:biology/psi88
py-Genesis-PyAPI API for the Genesis platform for genetics information processing
1.2.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-06-13 01:46:31
Also Listed In: python
License: APACHE20
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}Genesis-PyAPI>0:biology/py-Genesis-PyAPI@${PY_FLAVOR}
py-PySCeS Python Simulator for Cellular Systems
1.1.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.1.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-08-17 21:33:11
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}PySCeS>0:biology/py-PySCeS@${PY_FLAVOR}
py-atomium Molecular modeller and file parser
1.0.11_1* search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.0.11_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-10-04 04:09:29
Also Listed In: python science
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}atomium>0:science/py-atomium@${PY_FLAVOR}
py-bcbio-gff Read and write Generic Feature Format (GFF) with Biopython integration
0.7.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.7.0Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-02-03 19:39:09
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}bcbio-gff>0:biology/py-bcbio-gff@${PY_FLAVOR}
py-biom-format Biological Observation Matrix (BIOM) Format Project
2.1.10_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.1.10_1Version of this port present on the latest quarterly branch.
Maintainer: jrm@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-05-09 16:37:53
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}biom-format>0:biology/py-biom-format@${PY_FLAVOR}
py-biopython Collection of Python modules for bioinformatics
1.83 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.81_1Version of this port present on the latest quarterly branch.
Maintainer: mauricio@arareko.net search for ports maintained by this maintainer
Port Added: 2000-07-31 09:12:24
People watching this port, also watch:: python
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR}
py-biosig Library for reading and writing different biosignal data format
2.6.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.5.2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-12-30 08:33:19
License: GPLv3
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}biosig>0:biology/py-biosig@${PY_FLAVOR}
py-bx-python Python module for reading, manipulating and writing genomic data sets
0.11.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.11.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-05-06 06:28:34
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}bx-python>0:biology/py-bx-python@${PY_FLAVOR}
py-chainer-chemistry Library for deep learning in biology and chemistry
0.7.1_1* search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.7.1_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-08-08 21:06:54
Also Listed In: science
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}chainer-chemistry>0:science/py-chainer-chemistry@${PY_FLAVOR}
py-crossmap Lift over genomics coordinates between assemblies
0.5.4_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.5.4_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-04-12 23:39:05
Also Listed In: python
License: GPLv2
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}crossmap>0:biology/py-crossmap@${PY_FLAVOR}
py-cutadapt Trim adapters from high-throughput sequencing reads
4.7 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.7Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-11-29 22:17:53
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}cutadapt>0:biology/py-cutadapt@${PY_FLAVOR}
py-deap Distributed Evolutionary Algorithms in Python
1.4.1* search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.4.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-12-07 07:46:27
Also Listed In: devel math python science
License: GPLv3
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}deap>0:math/py-deap@${PY_FLAVOR}
py-deeptools User-friendly tools for exploring deep-sequencing data
3.5.2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.5.2Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-10-14 11:57:05
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}deepTools>0:biology/py-deeptools@${PY_FLAVOR}
py-deeptoolsintervals Python interface for deepTools interval trees
0.1.9 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.9Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-10-13 16:06:15
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}deeptoolsintervals>0:biology/py-deeptoolsintervals@${PY_FLAVOR}
py-dna-features-viewer Python library to visualize DNA features, e.g. GenBank or Gff files
3.1.3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.1.3Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-02-03 12:42:05
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}dna-features-viewer>0:biology/py-dna-features-viewer@${PY_FLAVOR}
py-dnaio Read and write FASTQ and FASTA
1.2.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.0Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-03-24 19:40:53
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}dnaio>0:biology/py-dnaio@${PY_FLAVOR}
py-ete3 Framework for the analysis and visualization of trees
3.1.3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.1.3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-05-16 00:13:16
Also Listed In: python
License: GPLv3
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}ete3>0:biology/py-ete3@${PY_FLAVOR}
py-gffutils Work with GFF and GTF files in a flexible database framework
0.11.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.11.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-19 02:07:07
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}gffutils>0:biology/py-gffutils@${PY_FLAVOR}
py-goatools Tools for processing and visualizing Gene Ontology terms
1.1.6_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.1.6_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-07-02 17:03:13
Also Listed In: python
License: BSD2CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}goatools>0:biology/py-goatools@${PY_FLAVOR}
py-gtfparse Parsing tools for GTF (gene transfer format) files
1.3.0_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.3.0_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-19 02:03:55
Also Listed In: python
License: APACHE20
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}gtfparse>0:biology/py-gtfparse@${PY_FLAVOR}
py-hits Utilities for processing high-throughput sequencing experiments
0.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-05-16 03:11:12
Also Listed In: python
License: GPLv3
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}hits>0:biology/py-hits@${PY_FLAVOR}
py-htseq Python library to facilitate programmatic analysis of sequence data
2.0.4 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.4Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-07-28 15:45:06
Also Listed In: python
License: GPLv3
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}HTSeq>0:biology/py-htseq@${PY_FLAVOR}
py-libnuml Numerical Markup Language for Python
1.1.6 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.1.6Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-09-19 06:51:08
Also Listed In: devel
License: LGPL21
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}libnuml>0:biology/py-libnuml@${PY_FLAVOR}
py-libsedml SED-ML library for Python
2.0.32 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.32Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-09-19 18:18:25
Also Listed In: devel
License: BSD2CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}libsedml>0:biology/py-libsedml@${PY_FLAVOR}
py-loompy Work with .loom files for single-cell RNA-seq data
3.0.7_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.0.7_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-09-21 08:05:03
Also Listed In: python
License: BSD2CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}loompy>0:biology/py-loompy@${PY_FLAVOR}
py-macs2 Identify transcription factor binding sites
2.2.9.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.2.9.1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-12-02 20:46:35
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR}
py-macs3 Peak caller aimed at transcription factor binding sites
3.0.1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.0.1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-01-10 15:21:08
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}MACS3>0:biology/py-macs3@${PY_FLAVOR}
py-mmcif mmCIF Core Access Library
0.84* search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.84Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-10-04 01:36:47
Also Listed In: python science
License: APACHE20
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}mmcif>0:science/py-mmcif@${PY_FLAVOR}
py-mrcfile MRC file I/O library which is used in structural biology
1.5.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.5.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-05-01 17:39:29
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}mrcfile>0:biology/py-mrcfile@${PY_FLAVOR}
py-multiqc Aggregate bioinformatics analysis reports across samples and tools
1.15 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.15Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-09-23 16:09:36
Also Listed In: python
License: GPLv3
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR}
py-newick Python module to read and write the Newick format
1.9.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.9.0Version of this port present on the latest quarterly branch.
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-02-03 01:00:13
Also Listed In: python
License: APACHE20
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}newick>0:biology/py-newick@${PY_FLAVOR}
py-ont-fast5-api Interface to HDF5 files in Oxford Nanopore .fast5 format
4.0.2_1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.0.2_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-08-13 13:36:06
Also Listed In: python
License: MPL20
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}ont-fast5-api>0:biology/py-ont-fast5-api@${PY_FLAVOR}
py-orange3-bioinformatics Orange add-on providing common functionality for bioinformatics
4.3.1_3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.3.1_3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-06-14 06:26:12
Also Listed In: python
License: GPLv3
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}orange3-bioinformatics>0:biology/py-orange3-bioinformatics@${PY_FLAVOR}
py-orange3-single-cell Orange add-on for gene expression of single cell data
0.8.2_5 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.8.2_5Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-08-07 07:50:53
Also Listed In: python
License: AGPLv3+
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}orange3-single-cell>0:biology/py-orange3-single-cell@${PY_FLAVOR}
py-pandas-charm Library for getting character matrices into and out of pandas
0.3.0_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.3.0_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-05-16 00:14:20
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}pandas-charm>0:biology/py-pandas-charm@${PY_FLAVOR}
py-py2bit Python interface for 2bit packed nucleotide files
0.3.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.3.0Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-10-13 12:57:10
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}py2bit>0:biology/py-py2bit@${PY_FLAVOR}
py-pybigwig Python access to bigWig files using libBigWig
0.3.22 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.3.22Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-10-13 13:09:05
Also Listed In: python
License: MIT
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}pyBigWig>0:biology/py-pybigwig@${PY_FLAVOR}
py-pyfaidx Efficient pythonic random access to fasta subsequences
0.5.9.5 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.5.9.5Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-19 02:05:49
Also Listed In: python
License: BSD3CLAUSE
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}pyfaidx>0:biology/py-pyfaidx@${PY_FLAVOR}
Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
Security Policy
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
gitlabApr 24
py-matrix-synapseApr 24
ruby31Apr 23
ruby32Apr 23
ruby33Apr 23
glpiApr 22
glpiApr 22
glpiApr 22
sdl2_soundApr 22
chromiumApr 21
ungoogled-chromiumApr 21
clamavApr 19
jenkinsApr 19
jenkins-ltsApr 19
electron27Apr 18

21 vulnerabilities affecting 286 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last processed:
2024-04-24 21:00:48 UTC


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)

Calculated hourly:
Port count 32219
Broken 85
Deprecated 178
Ignore 217
Forbidden 2
Restricted 2
No CDROM 1
Vulnerable 41
Expired 6
Set to expire 152
Interactive 0
new 24 hours 5
new 48 hours6
new 7 days20
new fortnight27
new month126
Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD 		Valid HTML, CSS, and RSS. Copyright © 2000-2024 Dan Langille. All rights reserved.