non port: biology/abyss/Makefile |
SVNWeb
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Number of commits found: 22 |
Mon, 9 May 2022
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[ 19:23 Kevin Bowling (kbowling) ] db78da8 (Only the first 10 of 120 ports in this commit are shown above. )
devel/libffi: Bump deps PORTREVISION for shlib change
PR: 263764
Reported by: VVD <vvd@unislabs.com>
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Thu, 30 Sep 2021
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[ 21:23 Rene Ladan (rene) ] 620968a (Only the first 10 of 399 ports in this commit are shown above. )
cleanup: drop support for EOL FreeBSD 11.X
Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11
Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*
Reviewed by: doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
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Sat, 21 Aug 2021
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[ 19:02 Yuri Victorovich (yuri) ] 9352bd7
biology/abyss: Broken on 11
Reported by: fallout
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Thu, 22 Apr 2021
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[ 17:18 Yuri Victorovich (yuri) ] 8ec7f5d
biology/abyss: Update 2.3.0-3 -> 2.3.1
Reported by: portscout
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Sun, 18 Apr 2021
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[ 20:19 Yuri Victorovich (yuri) ] 8e65beb
biology/abyss: Update 2.2.5 -> 2.3.0-3
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sun, 14 Mar 2021
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[ 05:17 yuri ]
biology/abyss: Add PORTSCOUT line
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Sun, 27 Sep 2020
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[ 06:59 yuri ]
biology/abyss: Update 2.2.4 -> 2.2.5
Reported by: portscout
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Sat, 4 Jul 2020
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[ 18:11 zeising ] (Only the first 10 of 105 ports in this commit are shown above. )
Chanse update of devel/libffi
Chase the devel/libffi update
Bump portrevision of all dependent ports to chace shard library version bump
in libffi.
Update LIB_DEPENDS lines where needed to not require a specific version of
libffi.so.
PR: 247028 (for tracking)
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Sat, 30 May 2020
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[ 09:10 yuri ]
biology/abyss: Update 2.2.3 -> 2.2.4
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Sun, 8 Mar 2020
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[ 21:56 jbeich ] (Only the first 10 of 64 ports in this commit are shown above. )
Drop dependency on devel/openmp
- Drop if devel/llvm* was used as a substitute
Approved by: yuri, rene (earlier version)
Differential Revision: https://reviews.freebsd.org/D23020
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Sat, 18 Jan 2020
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[ 19:46 yuri ]
biology/abyss: Broken on i386
Reported by: fallout
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Mon, 13 Jan 2020
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[ 04:06 yuri ]
biology/abyss: Update 2.1.5 -> 2.2.3
Reported by: portscout
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Wed, 11 Dec 2019
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[ 17:53 jbeich ] (Only the first 10 of 417 ports in this commit are shown above. )
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Sat, 21 Sep 2019
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[ 18:59 jbeich ] (Only the first 10 of 58 ports in this commit are shown above. )
devel/openmp: update to 9.0.0
- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783
Changes: http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI: https://abi-laboratory.pro/tracker/timeline/llvm_openmp/
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Mon, 19 Aug 2019
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[ 15:35 jbeich ] (Only the first 10 of 412 ports in this commit are shown above. )
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774
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Fri, 26 Jul 2019
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[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Fri, 21 Jun 2019
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[ 11:43 pkubaj ]
biology/abyss: fix build on big-endian architectures
Use new GCC from ports on GCC architectures.
Merge 25eb9d2a914fb211fdfe04fcda5593f29fd23ff5, fixes build on GCC
architectures.
Also include sys/endian.h and use bswap32 and bswap64 for byte-swapping (PR at
https://github.com/bcgsc/abyss/pull/287 ).
PR: 238737
Approved by: yuri (maintainer), mat (mentor)
Differential Revision: https://reviews.freebsd.org/D20717
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Wed, 8 May 2019
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[ 16:05 jbeich ] (Only the first 10 of 52 ports in this commit are shown above. )
devel/openmp: phase out
- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)
PR: 236907
Approved by: bapt (maintainer)
Differential Revision: https://reviews.freebsd.org/D19767
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Fri, 12 Apr 2019
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[ 06:36 jbeich ] (Only the first 10 of 392 ports in this commit are shown above. )
devel/boost-*: update to 1.70.0
Changes: http://www.boost.org/users/history/version_1_70_0.html
PR: 235956
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D19303
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Mon, 25 Feb 2019
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[ 07:56 yuri ]
New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end
sequence assembler
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Number of commits found: 22 |