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non port: biology/abyss/Makefile
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Number of commits found: 27

Sun, 23 Apr 2023
[ 09:09 Gerald Pfeifer (gerald) search for other commits by this committer ]    commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  8d3e020  (Only the first 10 of 2091 ports in this commit are shown above. View all ports for this commit)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 12 Aug 2022
[ 14:46 Dima Panov (fluffy) search for other commits by this committer ]    commit hash:4cf39decb348615b9c8a28370d987a85d1b8a5ed  commit hash:4cf39decb348615b9c8a28370d987a85d1b8a5ed  commit hash:4cf39decb348615b9c8a28370d987a85d1b8a5ed  4cf39de  (Only the first 10 of 722 ports in this commit are shown above. View all ports for this commit)
*/*: bump all consumers after recent boost upgrade
Sat, 30 Jul 2022
[ 07:34 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:5c534ae6563c43d6f99baf17f5e8b843e2da06c8  commit hash:5c534ae6563c43d6f99baf17f5e8b843e2da06c8  commit hash:5c534ae6563c43d6f99baf17f5e8b843e2da06c8  5c534ae 
biology/abyss: Add test target
Fri, 29 Jul 2022
[ 19:57 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:0a752832a5d6a21cdbacadfa4ca6e68a7d00c7f7  commit hash:0a752832a5d6a21cdbacadfa4ca6e68a7d00c7f7  commit hash:0a752832a5d6a21cdbacadfa4ca6e68a7d00c7f7  0a75283 
biology/abyss: Update 2.3.1 -> 2.3.5
Mon, 9 May 2022
[ 19:23 Kevin Bowling (kbowling) search for other commits by this committer ]    commit hash:db78da8f8b7388d951665362479eb4aa0babf1b4  commit hash:db78da8f8b7388d951665362479eb4aa0babf1b4  commit hash:db78da8f8b7388d951665362479eb4aa0babf1b4  db78da8  (Only the first 10 of 120 ports in this commit are shown above. View all ports for this commit)
devel/libffi: Bump deps PORTREVISION for shlib change

PR:		263764
Reported by:	VVD <vvd@unislabs.com>
Thu, 30 Sep 2021
[ 21:23 Rene Ladan (rene) search for other commits by this committer ]    commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7  commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7  commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7  620968a  (Only the first 10 of 399 ports in this commit are shown above. View all ports for this commit)
cleanup: drop support for EOL FreeBSD 11.X

Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11

Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*

Reviewed by:	doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
Sat, 21 Aug 2021
[ 19:02 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:9352bd72e0b04fdf32d9c63353aabf1a672936fd  commit hash:9352bd72e0b04fdf32d9c63353aabf1a672936fd  commit hash:9352bd72e0b04fdf32d9c63353aabf1a672936fd  9352bd7 
biology/abyss: Broken on 11

Reported by:	fallout
Thu, 22 Apr 2021
[ 17:18 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:8ec7f5d3deb04932228c003c0bebfbda541bb181  commit hash:8ec7f5d3deb04932228c003c0bebfbda541bb181  commit hash:8ec7f5d3deb04932228c003c0bebfbda541bb181  8ec7f5d 
biology/abyss: Update 2.3.0-3 -> 2.3.1

Reported by:	portscout
Sun, 18 Apr 2021
[ 20:19 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:8e65beb783c9abf477fa85e8437600b6890d94b8  commit hash:8e65beb783c9abf477fa85e8437600b6890d94b8  commit hash:8e65beb783c9abf477fa85e8437600b6890d94b8  8e65beb 
biology/abyss: Update 2.2.5 -> 2.3.0-3
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Sun, 14 Mar 2021
[ 05:17 yuri search for other commits by this committer ] Original commit   Revision:568329
biology/abyss: Add PORTSCOUT line
Sun, 27 Sep 2020
[ 06:59 yuri search for other commits by this committer ] Original commit   Revision:550242
biology/abyss: Update 2.2.4 -> 2.2.5

Reported by:	portscout
Sat, 4 Jul 2020
[ 18:11 zeising search for other commits by this committer ] Original commit   Revision:541232 (Only the first 10 of 105 ports in this commit are shown above. View all ports for this commit)
Chanse update of devel/libffi

Chase the devel/libffi update
Bump portrevision of all dependent ports to chace shard library version bump
in libffi.
Update LIB_DEPENDS lines where needed to not require a specific version of
libffi.so.

PR:		247028 (for tracking)
Sat, 30 May 2020
[ 09:10 yuri search for other commits by this committer ] Original commit   Revision:537064
biology/abyss: Update 2.2.3 -> 2.2.4
Sun, 8 Mar 2020
[ 21:56 jbeich search for other commits by this committer ] Original commit   Revision:528082 (Only the first 10 of 64 ports in this commit are shown above. View all ports for this commit)
Drop dependency on devel/openmp

- Drop if devel/llvm* was used as a substitute

Approved by:	yuri, rene (earlier version)
Differential Revision:	https://reviews.freebsd.org/D23020
Sat, 18 Jan 2020
[ 19:46 yuri search for other commits by this committer ] Original commit   Revision:523491
biology/abyss: Broken on i386

Reported by:	fallout
Mon, 13 Jan 2020
[ 04:06 yuri search for other commits by this committer ] Original commit   Revision:522851
biology/abyss: Update 2.1.5 -> 2.2.3

Reported by:	portscout
Wed, 11 Dec 2019
[ 17:53 jbeich search for other commits by this committer ] Original commit   Revision:519824 (Only the first 10 of 417 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
Sat, 21 Sep 2019
[ 18:59 jbeich search for other commits by this committer ] Original commit   Revision:512535 (Only the first 10 of 58 ports in this commit are shown above. View all ports for this commit)
devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/
Mon, 19 Aug 2019
[ 15:35 jbeich search for other commits by this committer ] Original commit   Revision:509290 (Only the first 10 of 412 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774
Fri, 26 Jul 2019
[ 20:46 gerald search for other commits by this committer ] Original commit   Revision:507372 (Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Fri, 21 Jun 2019
[ 11:43 pkubaj search for other commits by this committer ] Original commit   Revision:504788
biology/abyss: fix build on big-endian architectures

Use new GCC from ports on GCC architectures.

Merge 25eb9d2a914fb211fdfe04fcda5593f29fd23ff5, fixes build on GCC
architectures.

Also include sys/endian.h and use bswap32 and bswap64 for byte-swapping (PR at
https://github.com/bcgsc/abyss/pull/287 ).

PR:		238737
Approved by:	yuri (maintainer), mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D20717
Wed, 8 May 2019
[ 16:05 jbeich search for other commits by this committer ] Original commit   Revision:501030 (Only the first 10 of 52 ports in this commit are shown above. View all ports for this commit)
devel/openmp: phase out

- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)

PR:		236907
Approved by:	bapt (maintainer)
Differential Revision:	https://reviews.freebsd.org/D19767
Fri, 12 Apr 2019
[ 06:36 jbeich search for other commits by this committer ] Original commit   Revision:498698 (Only the first 10 of 392 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303
Mon, 25 Feb 2019
[ 07:56 yuri search for other commits by this committer ] Original commit   Revision:493842
New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end
sequence assembler

Number of commits found: 27