non port: biology/abyss/Makefile |
SVNWeb
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Number of commits found: 27 |
Sun, 23 Apr 2023
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[ 09:09 Gerald Pfeifer (gerald) ] 8d3e020 (Only the first 10 of 2091 ports in this commit are shown above. )
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Fri, 12 Aug 2022
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[ 14:46 Dima Panov (fluffy) ] 4cf39de (Only the first 10 of 722 ports in this commit are shown above. )
*/*: bump all consumers after recent boost upgrade
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Sat, 30 Jul 2022
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[ 07:34 Yuri Victorovich (yuri) ] 5c534ae
biology/abyss: Add test target
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Fri, 29 Jul 2022
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[ 19:57 Yuri Victorovich (yuri) ] 0a75283
biology/abyss: Update 2.3.1 -> 2.3.5
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Mon, 9 May 2022
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[ 19:23 Kevin Bowling (kbowling) ] db78da8 (Only the first 10 of 120 ports in this commit are shown above. )
devel/libffi: Bump deps PORTREVISION for shlib change
PR: 263764
Reported by: VVD <vvd@unislabs.com>
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Thu, 30 Sep 2021
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[ 21:23 Rene Ladan (rene) ] 620968a (Only the first 10 of 399 ports in this commit are shown above. )
cleanup: drop support for EOL FreeBSD 11.X
Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11
Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*
Reviewed by: doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
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Sat, 21 Aug 2021
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[ 19:02 Yuri Victorovich (yuri) ] 9352bd7
biology/abyss: Broken on 11
Reported by: fallout
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Thu, 22 Apr 2021
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[ 17:18 Yuri Victorovich (yuri) ] 8ec7f5d
biology/abyss: Update 2.3.0-3 -> 2.3.1
Reported by: portscout
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Sun, 18 Apr 2021
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[ 20:19 Yuri Victorovich (yuri) ] 8e65beb
biology/abyss: Update 2.2.5 -> 2.3.0-3
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sun, 14 Mar 2021
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[ 05:17 yuri ]
biology/abyss: Add PORTSCOUT line
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Sun, 27 Sep 2020
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[ 06:59 yuri ]
biology/abyss: Update 2.2.4 -> 2.2.5
Reported by: portscout
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Sat, 4 Jul 2020
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[ 18:11 zeising ] (Only the first 10 of 105 ports in this commit are shown above. )
Chanse update of devel/libffi
Chase the devel/libffi update
Bump portrevision of all dependent ports to chace shard library version bump
in libffi.
Update LIB_DEPENDS lines where needed to not require a specific version of
libffi.so.
PR: 247028 (for tracking)
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Sat, 30 May 2020
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[ 09:10 yuri ]
biology/abyss: Update 2.2.3 -> 2.2.4
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Sun, 8 Mar 2020
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[ 21:56 jbeich ] (Only the first 10 of 64 ports in this commit are shown above. )
Drop dependency on devel/openmp
- Drop if devel/llvm* was used as a substitute
Approved by: yuri, rene (earlier version)
Differential Revision: https://reviews.freebsd.org/D23020
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Sat, 18 Jan 2020
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[ 19:46 yuri ]
biology/abyss: Broken on i386
Reported by: fallout
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Mon, 13 Jan 2020
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[ 04:06 yuri ]
biology/abyss: Update 2.1.5 -> 2.2.3
Reported by: portscout
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Wed, 11 Dec 2019
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[ 17:53 jbeich ] (Only the first 10 of 417 ports in this commit are shown above. )
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Sat, 21 Sep 2019
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[ 18:59 jbeich ] (Only the first 10 of 58 ports in this commit are shown above. )
devel/openmp: update to 9.0.0
- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783
Changes: http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI: https://abi-laboratory.pro/tracker/timeline/llvm_openmp/
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Mon, 19 Aug 2019
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[ 15:35 jbeich ] (Only the first 10 of 412 ports in this commit are shown above. )
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774
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Fri, 26 Jul 2019
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[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Fri, 21 Jun 2019
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[ 11:43 pkubaj ]
biology/abyss: fix build on big-endian architectures
Use new GCC from ports on GCC architectures.
Merge 25eb9d2a914fb211fdfe04fcda5593f29fd23ff5, fixes build on GCC
architectures.
Also include sys/endian.h and use bswap32 and bswap64 for byte-swapping (PR at
https://github.com/bcgsc/abyss/pull/287 ).
PR: 238737
Approved by: yuri (maintainer), mat (mentor)
Differential Revision: https://reviews.freebsd.org/D20717
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Wed, 8 May 2019
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[ 16:05 jbeich ] (Only the first 10 of 52 ports in this commit are shown above. )
devel/openmp: phase out
- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)
PR: 236907
Approved by: bapt (maintainer)
Differential Revision: https://reviews.freebsd.org/D19767
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Fri, 12 Apr 2019
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[ 06:36 jbeich ] (Only the first 10 of 392 ports in this commit are shown above. )
devel/boost-*: update to 1.70.0
Changes: http://www.boost.org/users/history/version_1_70_0.html
PR: 235956
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D19303
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Mon, 25 Feb 2019
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[ 07:56 yuri ]
New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end
sequence assembler
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Number of commits found: 27 |