Port details on branch 2022Q3 |
- bbmap BBMap short read aligner, and other bioinformatic tools
- 38.92 biology =0 38.92Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2021-04-18 16:24:08
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- Also Listed In: java
- License: BSD3CLAUSE
- WWW:
- https://jgi.doe.gov/data-and-tools/bbtools/
- Description:
- This package includes BBMap, a short read aligner, as well as various other
bioinformatic tools. It is written in pure Java, can run on any platform, and
has no dependencies other than Java being installed (compiled for Java 6 and
higher). All tools are efficient and multithreaded.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/bbmap/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/bbmap
- pkg install bbmap
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: bbmap
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1629639676
SHA256 (BBMap_38.92.tar.gz) = a5db3921684296dcbcabd0d36dc123597f587a6ac96855f4f901fee494718dc3
SIZE (BBMap_38.92.tar.gz) = 10669924
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Runtime dependencies:
-
- bash : shells/bash
- pigz : archivers/pigz
- pbzip2 : archivers/pbzip2
- java : java/openjdk8
- This port is required by:
- for Run
-
- biology/biostar-tools
Configuration Options:
- No options to configure
- Options name:
- biology_bbmap
- USES:
- shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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