notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: biology/bcftools/files/patch-prob1.c
SVNWeb

Number of commits found XX: 3

Wed, 25 Oct 2017
[ 10:19 pizzamig ] Original commit   Revision:452840
452840 biology/bcftools/Makefile
452840 biology/bcftools/distinfo
452840 biology/bcftools/files/patch-Makefile
452840 biology/bcftools/files/patch-configure.ac
452840 biology/bcftools/files/patch-misc_run-roh.pl
452840 biology/bcftools/files/patch-prob1.c
452840 biology/bcftools/files/patch-test_test.pl
452840 biology/bcftools/files/pkg-message.in
452840 biology/bcftools/pkg-plist
452840 biology/htslib/Makefile

(Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
Fri, 25 Dec 2015
[ 01:31 junovitch ] Original commit   Revision:404398
404398 biology/bcftools/Makefile
404398 biology/bcftools/distinfo
404398 biology/bcftools/files/patch-Makefile
404398 biology/bcftools/files/patch-plugins_fixploidy.mk
404398 biology/bcftools/files/patch-plugins_vcf2sex.mk
404398 biology/bcftools/files/patch-prob1.c
404398 biology/bcftools/files/patch-test_test.pl
404398 biology/bcftools/files/pkg-message.in
404398 biology/bcftools/pkg-plist
404398 biology/htslib/Makefile

(Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
Fri, 5 Jun 2015
[ 21:01 pi ] Original commit   Revision:388638
388638 biology/Makefile
388638 biology/bcftools
388638 biology/bcftools/Makefile
388638 biology/bcftools/distinfo
388638 biology/bcftools/files
388638 biology/bcftools/files/patch-Makefile
388638 biology/bcftools/files/patch-plugins_fixploidy.mk
388638 biology/bcftools/files/patch-plugins_vcf2sex.mk
388638 biology/bcftools/files/patch-prob1.c
388638 biology/bcftools/files/pkg-message.in

(Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
New port: biology/bcftools

BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All
commands work transparently with both VCFs and BCFs, both
uncompressed and BGZF-compressed.

WWW: http://www.htslib.org/

PR:		199747
Submitted by:	cartwright@asu.edu

Number of commits found XX: 3

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
powerdns-recursorMay 26
sympaMay 26
chromiumMay 24
piwigoMay 23
drupal7May 22
sympaMay 22
tomcat-develMay 22
tomcat7May 22
tomcat85May 22
tomcat9May 22
unboundMay 22
zabbix3-proxyMay 20
zabbix3-serverMay 20
rubygem-actionpack52May 19
rubygem-actionpack60May 19

17 vulnerabilities affecting 180 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2020-05-27 17:20:39


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 39438
Broken 79
Deprecated 627
Ignore 347
Forbidden 5
Restricted 147
No CDROM 76
Vulnerable 23
Expired 15
Set to expire 581
Interactive 0
new 24 hours 3
new 48 hours10
new 7 days34
new fortnight80
new month233

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2020 Dan Langille. All rights reserved.