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Port details on branch 2022Q3
bioparser C++ header-only parsing library for several formats in bioinformatics
3.1.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.1.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-01-19 07:56:57
Last Update: 2023-08-29 07:32:45
Commit Hash: c776c74
Also Listed In: devel
License: MIT
WWW:
https://github.com/rvaser/bioparser
Description:
Bioparser is a C++ header only parsing library for several formats in bioinformatics (FASTA/Q, MHAP/PAF/SAM), with support for zlib compressed files.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (15 items)
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  1. /usr/local/share/licenses/bioparser-3.1.0/catalog.mk
  2. /usr/local/share/licenses/bioparser-3.1.0/LICENSE
  3. /usr/local/share/licenses/bioparser-3.1.0/MIT
  4. include/bioparser/fasta_parser.hpp
  5. include/bioparser/fastq_parser.hpp
  6. include/bioparser/mhap_parser.hpp
  7. include/bioparser/paf_parser.hpp
  8. include/bioparser/parser.hpp
  9. include/bioparser/sam_parser.hpp
  10. lib/cmake/bioparser/bioparserConfig.cmake
  11. lib/cmake/bioparser/bioparserConfigVersion.cmake
  12. lib/cmake/bioparser/bioparserTargets.cmake
  13. @owner
  14. @group
  15. @mode
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Dependency lines:
  • bioparser>0:biology/bioparser
To install the port:
cd /usr/ports/biology/bioparser/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/bioparser
  • pkg install bioparser
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: bioparser
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1693289836 SHA256 (rvaser-bioparser-3.1.0_GH0.tar.gz) = ddb48cb456c72cf2955adf056c9204caf65483ec0a5bbba47389bc30ed9fdd05 SIZE (rvaser-bioparser-3.1.0_GH0.tar.gz) = 1016738

Packages (timestamps in pop-ups are UTC):
bioparser
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest3.1.03.1.03.0.123.1.03.1.0---
FreeBSD:13:quarterly3.1.03.1.03.0.153.1.03.1.03.1.03.1.03.1.0
FreeBSD:14:latest3.1.03.1.03.0.153.1.03.1.03.0.15-3.0.15
FreeBSD:14:quarterly3.1.03.1.0-3.1.03.1.03.1.03.1.03.1.0
FreeBSD:15:latest3.1.03.1.0n/a3.1.0n/a3.1.03.1.03.1.0
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. biosoup>0 : biology/biosoup
  2. cmake : devel/cmake-core
  3. ninja : devel/ninja
Test dependencies:
  1. googletest>0 : devel/googletest
Runtime dependencies:
  1. biosoup>0 : biology/biosoup
This port is required by:
for Build
  1. biology/rampler
  2. biology/spoa

Configuration Options:
No options to configure
Options name:
biology_bioparser
USES:
cmake
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/rvaser/bioparser/tar.gz/3.1.0?dummy=/
Collapse this list.

There are no commits on branch 2022Q3 for this port