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Port details on branch 2022Q3
bolt-lmm Mixed model association testing and variance component analysis
2.3.6_8 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.3.6_8Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-05-26 03:37:05
Last Update: 2024-02-13 14:44:22
Commit Hash: db61653
License: GPLv3
WWW:
https://data.broadinstitute.org/alkesgroup/BOLT-LMM/
Description:
The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML algorithm for variance components analysis (i.e., partitioning of SNP-heritability and estimation of genetic correlations).
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (12 items)
Collapse this list.
  1. /usr/local/share/licenses/bolt-lmm-2.3.6_8/catalog.mk
  2. /usr/local/share/licenses/bolt-lmm-2.3.6_8/LICENSE
  3. /usr/local/share/licenses/bolt-lmm-2.3.6_8/GPLv3
  4. bin/bolt
  5. share/bolt-lmm/tables/LDSCORE.1000G_EUR.tab.gz
  6. share/bolt-lmm/tables/genetic_map_hg17_withX.txt.gz
  7. share/bolt-lmm/tables/genetic_map_hg18_withX.txt.gz
  8. share/bolt-lmm/tables/genetic_map_hg19_withX.txt.gz
  9. share/bolt-lmm/tables/genetic_map_hg38_withX.txt.gz
  10. @owner
  11. @group
  12. @mode
Collapse this list.
Dependency lines:
  • bolt-lmm>0:biology/bolt-lmm
Conflicts:
CONFLICTS_INSTALL:
  • rubygem-bolt
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/biology/bolt-lmm/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/bolt-lmm
  • pkg install bolt-lmm
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: bolt-lmm
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1647782880 SHA256 (BOLT-LMM_v2.3.6.tar.gz) = bc82a5166b3d2d480bcda1f4455c29e1018db733706d28c35d8bf8de7e1e85d5 SIZE (BOLT-LMM_v2.3.6.tar.gz) = 335131602
Packages (timestamps in pop-ups are UTC):
bolt-lmm
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2.3.6_82.3.6_8--2.3.6_8---
FreeBSD:13:quarterly2.3.6_72.3.6_7--2.3.6_8---
FreeBSD:14:latest2.3.6_82.3.6_8--2.3.6_8---
FreeBSD:14:quarterly2.3.6_72.3.6_8--2.3.6_8---
FreeBSD:15:latest2.3.6_82.3.6_8n/a-n/a--2.3.6_8
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
Library dependencies:
  1. libnlopt.so : math/nlopt
  2. libopenblas.so : math/openblas
  3. libboost_program_options.so : devel/boost-libs
There are no ports dependent upon this port
Configuration Options:
===> The following configuration options are available for bolt-lmm-2.3.6_8: EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings
Options name:
biology_bolt-lmm
USES:
gmake
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/
Collapse this list.

There are no commits on branch 2022Q3 for this port
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