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non port: biology/bolt-lmm/Makefile
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Number of commits found: 7

Thu, 30 Jan 2020
[ 14:17 swills ] Original commit   Revision:524642
524642 biology/bolt-lmm/Makefile
524642 biology/gemma/Makefile
524642 biology/treekin/Makefile
524642 cad/calculix-ccx/Makefile
524642 cad/gmsh/Makefile
524642 cad/pdnmesh/Makefile
524642 databases/grass7/Makefile
524642 devel/ocaml-lacaml/Makefile
524642 games/leela-zero/Makefile
524642 graphics/caffe/Makefile

(Only the first 10 of 90 ports in this commit are shown above. View all ports for this commit)
Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix
Wed, 11 Dec 2019
[ 17:53 jbeich ] Original commit   Revision:519824
519824 archivers/innoextract/Makefile
519824 archivers/tardy/Makefile
519824 astro/libkgeomap/Makefile
519824 astro/libosmium/Makefile
519824 audio/ardour/Makefile
519824 audio/ardour5/Makefile
519824 audio/clementine-player/Makefile
519824 audio/cpp-xmms2/Makefile
519824 audio/csound/Makefile
519824 audio/faust-lv2/Makefile

(Only the first 10 of 417 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
Mon, 19 Aug 2019
[ 15:35 jbeich ] Original commit   Revision:509290
509290 archivers/innoextract/Makefile
509290 archivers/tardy/Makefile
509290 astro/libkgeomap/Makefile
509290 astro/libosmium/Makefile
509290 audio/ardour/Makefile
509290 audio/ardour5/Makefile
509290 audio/clementine-player/Makefile
509290 audio/cpp-xmms2/Makefile
509290 audio/csound/Makefile
509290 audio/faust-lv2/Makefile

(Only the first 10 of 412 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774
Tue, 13 Aug 2019
[ 15:30 jwb ] Original commit   Revision:508832
508832 biology/bolt-lmm/Makefile
508832 biology/bolt-lmm/distinfo
508832 biology/bolt-lmm/files/patch-src_Jackknife.cpp
508832 biology/bolt-lmm/files/patch-src_LDscoreCalibration.cpp
508832 biology/bolt-lmm/files/patch-src_Makefile
508832 biology/bolt-lmm/files/patch-src_SnpData.cpp
508832 biology/bolt-lmm/files/patch-src_StatsUtils.cpp
biology/bolt-lmm: Upgrade to 2.3.4

Remove previously upstreamed patches
New Makefile patch that preserves default behavior and should be palatable
to upstream
Sun, 4 Aug 2019
[ 23:48 jwb ] Original commit   Revision:508135
508135 biology/bolt-lmm/Makefile
508135 biology/bolt-lmm/files/patch-src_Jackknife.cpp
508135 biology/bolt-lmm/files/patch-src_LDscoreCalibration.cpp
508135 biology/bolt-lmm/files/patch-src_SnpData.cpp
508135 biology/bolt-lmm/files/patch-src_StatsUtils.cpp
508135 biology/bolt-lmm/files/patch-src_Timer.cpp
PR:             239613
Submitted by:   pkubaj
Fri, 26 Jul 2019
[ 20:46 gerald ] Original commit   Revision:507372
507372 Mk/bsd.ruby.mk
507372 accessibility/atkmm/Makefile
507372 accessibility/kmag/Makefile
507372 accessibility/kmousetool/Makefile
507372 accessibility/kmouth/Makefile
507372 accessibility/libqaccessibilityclient/Makefile
507372 accessibility/qt5-speech/Makefile
507372 archivers/R-cran-zip/Makefile
507372 archivers/ark/Makefile
507372 archivers/brotli/Makefile

(Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Sun, 26 May 2019
[ 03:36 jwb ] Original commit   Revision:502673
502673 biology/Makefile
502673 biology/bolt-lmm
502673 biology/bolt-lmm/Makefile
502673 biology/bolt-lmm/distinfo
502673 biology/bolt-lmm/files
502673 biology/bolt-lmm/files/patch-example_run__example.sh
502673 biology/bolt-lmm/files/patch-example_run__example__reml2.sh
502673 biology/bolt-lmm/files/patch-src_Makefile
502673 biology/bolt-lmm/files/patch-src_StringUtils.cpp
502673 biology/bolt-lmm/pkg-descr

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
biology/bolt-lmm: Mixed model association testing and variance component
analysis

The BOLT-LMM software package currently consists of two main algorithms, the
BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML
algorithm for variance components analysis (i.e., partitioning of
SNP-heritability and estimation of genetic correlations).

Number of commits found: 7

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